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* Merge branch 'master' into stagingMarius Bakke2019-06-29
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| * gnu: nginx: Update to 1.17.1.Marius Bakke2019-06-29
| | | | | | | | * gnu/packages/web.scm (nginx): Update to 1.17.1.
| * gnu: gstreamer: Fix buffer offset problem.Marius Bakke2019-06-29
| | | | | | | | | | | | | | * gnu/packages/patches/gstreamer-buffer-reset-offset.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gstreamer.scm (gstreamer)[source](patches): New field. [arguments]: Do not disable any tests.
| * gnu: stow: Update license information.Efraim Flashner2019-06-29
| | | | | | | | * gnu/packages/package-management.scm (stow)[license]: Update to gpl3+.
| * etc: Remove hydra.gnu.org.pub key.Tobias Geerinckx-Rice2019-06-29
| | | | | | | | | | | | | | | | | | * etc/substitutes/hydra.gnu.org.pub: Delete file. * guix/self.scm (miscellaneous-files): Don't install it. * Makefile.am (dist_pkgdata_DATA): Remove it. * gnu/services/base.scm (%default-authorized-guix-keys): Likewise. (hydra-key-authorization): Rename to… (substitute-key-authorization): …this. Adjust only call site.
| * gnu: flashrom: Update to 1.1.Tobias Geerinckx-Rice2019-06-29
| | | | | | | | * gnu/packages/flashing-tools.scm (flashrom): Update to 1.1.
| * gnu: di: Update to 4.47.1.Tobias Geerinckx-Rice2019-06-29
| | | | | | | | * gnu/packages/admin.scm (di): Update to 4.47.1.
| * gnu: stow: Update to 2.3.0.Eric Bavier2019-06-28
| | | | | | | | | | * gnu/packages/package-management.scm (stow): Update to 2.3.0. [propagated-inputs]: New field.
| * gnu: Add Perl Clone::Choose.Eric Bavier2019-06-28
| | | | | | | | * gnu/packages/perl.scm (perl-clone-choose): New variable.
| * gnu: rust: use llvm@8Ivan Petkov2019-06-28
| | | | | | | | | | | | | | * gnu/packages/llvm.scm (llvm): Rename to... (llvm-8): ...this. (llvm): New variable. * gnu/packages/rust.scm (rust)[inputs]: Use llvm-8
| * gnu: rust: downgrade older versions to llvm@6Ivan Petkov2019-06-28
| | | | | | | | * gnu/packages/rust.scm: (rust-1.30): Remove llvm override.
| * gnu: rust: remove debug-info patch thanks to newer gdb versionIvan Petkov2019-06-28
| | | | | | | | | | | | | | * gnu/local.mk: (dist_patch_DATA): Delete %D%/packages/patches/rust-1.30-gdb-llvm.patch * gnu/packages/rust.scm: (rust-1.30): Delete patch overrides. (rust-1.31): Delete patch overrides.
| * gnu: r-quantreg: Update to 5.41.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/statistics.scm (r-quantreg): Update to 5.41.
| * gnu: r-fpc: Update to 2.2-3.Ricardo Wurmus2019-06-29
| | | | | | | | | | * gnu/packages/statistics.scm (r-fpc): Update to 2.2-3. [propagated-inputs]: Remove r-mvtnorm.
| * gnu: r-mclust: Update to 5.4.4.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/statistics.scm (r-mclust): Update to 5.4.4.
| * gnu: r-mvtnorm: Update to 1.0-11.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-11.
| * gnu: r-segmented: Update to 1.0-0.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/statistics.scm (r-segmented): Update to 1.0-0.
| * gnu: r-plotrix: Update to 3.7-6.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/statistics.scm (r-plotrix): Update to 3.7-6.
| * gnu: r-dbplyr: Update to 1.4.2.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.2.
| * gnu: r-rlang: Update to 0.4.0.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/statistics.scm (r-rlang): Update to 0.4.0.
| * gnu: r-gdtools: Update to 0.1.9.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/statistics.scm (r-gdtools): Update to 0.1.9.
| * gnu: r-cluster: Update to 2.1.0.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/statistics.scm (r-cluster): Update to 2.1.0.
| * gnu: r-future-apply: Update to 1.3.0.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-future-apply): Update to 1.3.0.
| * gnu: r-bootstrap: Update to 2019.6.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-bootstrap): Update to 2019.6.
| * gnu: r-rnifti: Update to 0.11.0.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-rnifti): Update to 0.11.0.
| * gnu: r-rgl: Update to 0.100.24.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-rgl): Update to 0.100.24.
| * gnu: r-remotes: Update to 2.1.0.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-remotes): Update to 2.1.0.
| * gnu: r-bayestestr: Update to 0.2.2.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-bayestestr): Update to 0.2.2.
| * gnu: r-emmeans: Update to 1.3.5.1.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-emmeans): Update to 1.3.5.1.
| * gnu: r-ggstance: Update to 0.3.2.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-ggstance): Update to 0.3.2.
| * gnu: r-flextable: Update to 0.5.5.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-flextable): Update to 0.5.5.
| * gnu: r-sjmisc: Update to 2.8.1.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-sjmisc): Update to 2.8.1.
| * gnu: r-prediction: Update to 0.3.14.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-prediction): Update to 0.3.14.
| * gnu: r-officer: Update to 0.3.5.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-officer): Update to 0.3.5.
| * gnu: r-ggpubr: Update to 0.2.1.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-ggpubr): Update to 0.2.1.
| * gnu: r-ellipsis: Update to 0.2.0.Ricardo Wurmus2019-06-29
| | | | | | | | | | * gnu/packages/cran.scm (r-ellipsis): Update to 0.2.0. [propagated-inputs]: Add r-rlang.
| * gnu: r-cgdsr: Update to 1.3.0.Ricardo Wurmus2019-06-29
| | | | | | | | | | * gnu/packages/cran.scm (r-cgdsr): Update to 1.3.0. [propagated-inputs]: Add r-httr.
| * gnu: r-quantmod: Update to 0.4-15.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-quantmod): Update to 0.4-15.
| * gnu: r-tinytex: Update to 0.14.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-tinytex): Update to 0.14.
| * gnu: r-xfun: Update to 0.8.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-xfun): Update to 0.8.
| * gnu: r-performanceanalytics: Update to 1.5.3.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.3.
| * gnu: r-abbyyr: Update to 0.5.5.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/cran.scm (r-abbyyr): Update to 0.5.5.
| * gnu: r-phangorn: Update to 2.5.5.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/bioinformatics.scm (r-phangorn): Update to 2.5.5.
| * gnu: r-tximport: Update to 1.12.3.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/bioinformatics.scm (r-tximport): Update to 1.12.3.
| * gnu: r-genomicfeatures: Update to 1.36.3.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.3.
| * gnu: r-genomicalignments: Update to 1.20.1.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.20.1.
| * gnu: r-biomart: Update to 2.40.1.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/bioinformatics.scm (r-biomart): Update to 2.40.1.
| * gnu: r-edger: Update to 3.26.5.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.5.
| * gnu: r-systempiper: Update to 1.18.2.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.18.2.
| * gnu: r-rsubread: Update to 1.34.4.Ricardo Wurmus2019-06-29
| | | | | | | | * gnu/packages/bioconductor.scm (r-rsubread): Update to 1.34.4.
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