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* gnu: nss-certs: Update to 3.34.1.Tobias Geerinckx-Rice2017-12-02
| | | | * gnu/packages/certs.scm (nss-certs): Update to 3.34.1.
* gnu: guile-sly: Do not propagate Guile.Ludovic Courtès2017-12-01
| | | | | | * gnu/packages/guile.scm (guile-sly)[propagated-inputs]: Move GUILE-2.2 to... [inputs]: ... here.
* gnu: tor: Update to 3.1.9 [security fixes].Tobias Geerinckx-Rice2017-12-01
| | | | | | This release contains fixes for TROVE-2017-{009,010,011,012,013}. * gnu/packages/tor.scm (tor): Update to 3.1.9.
* gnu: glusterfs: Replace hardcoded FHS references.Ricardo Wurmus2017-12-01
| | | | | | * gnu/packages/patches/glusterfs-use-PATH-instead-of-hardcodes.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/file-systems.scm (glusterfs)[source]: Use it.
* gnu: Add mtr.Tobias Geerinckx-Rice2017-12-01
| | | | * gnu/packages/networking.scm (mtr): New public variable.
* gnu: ghc-blaze-builder: Update to 0.4.0.2.Tobias Geerinckx-Rice2017-12-01
| | | | * gnu/packages/haskell.scm (ghc-blaze-builder): Update to 0.4.0.2.
* gnu: ghc-asn1-types: Update to 0.3.2.Tobias Geerinckx-Rice2017-12-01
| | | | * gnu/packages/haskell-crypto.scm (ghc-asn1-types): Update to 0.3.2.
* gnu: ghc-asn1-encoding: Update to 0.9.5.Tobias Geerinckx-Rice2017-12-01
| | | | * gnu/packages/haskell-crypto.scm (ghc-asn1-encoding): Update to 0.9.5.
* gnu: ghc-array: Update to 0.5.2.0.Tobias Geerinckx-Rice2017-12-01
| | | | * gnu/packages/haskell.scm (ghc-array): Update to 0.5.2.0.
* gnu: ghc-aeson-qq: Update to 0.8.2.Tobias Geerinckx-Rice2017-12-01
| | | | * gnu/packages/haskell-web.scm (ghc-aeson-qq): Update to 0.8.2.
* gnu: java: Fix several synopses & descriptions.Tobias Geerinckx-Rice2017-12-01
| | | | | | | | | | * gnu/packages/java.scm (java-plexus-classworlds)[description]: Fix typo and use @code. (java-plexus-container-default-bootstrap)[synopsis]: Hyphenate for clarity, as done in the description. [description]: Fix typo and use @dfn. (java-jmh)[description]: Fix typo. (java-xerial-core)[synopsis, description]: Fix typos.
* gnu: guile: Add version 2.2.3.Ludovic Courtès2017-12-01
| | | | * gnu/packages/guile.scm (guile-2.2.3): New variable.
* gnu: gnome-default-applications: Add Evince for PDF and PS.Ludovic Courtès2017-12-01
| | | | | | | * gnu/packages/gnome.scm (gnome-default-applications)[propagated-inputs]: Add EVINCE. [arguments]: Associate Evince with application/pdf and application/postscript.
* services: xorg: Add 'font-misc-misc' to the default font set.Ludovic Courtès2017-12-01
| | | | | | | Fixes <https://bugs.gnu.org/24279>. Reported by John Darrington <john@darrington.wattle.id.au>. * gnu/services/xorg.scm (%default-xorg-fonts): Add FONT-MISC-MISC.
* gnu: ghc-edisoncore: Fix typo in synopsis.Tobias Geerinckx-Rice2017-12-01
| | | | * gnu/packages/haskell.scm (ghc-edisoncore)[synopsis]: Fix typo.
* gnu: man-pages: Update to 4.14.Tobias Geerinckx-Rice2017-12-01
| | | | * gnu/packages/man.scm (man-pages): Update to 4.14.
* system: vm: Do not add EFI partition on ARM system.Mathieu Othacehe2017-12-01
| | | | | | | | * gnu/system/vm.scm (qemu-img): Do not add EFI partition if we are targetting ARM. UEFI support on u-boot is still experimental, so do not add EFI partition on ARM for now.
* gnu: openfoam: Clean up to reduce closure.Dave Love2017-12-01
| | | | | | | | | This saves ~1GB. * gnu/packages/simulation.scm (openfoam)[outputs]: Add debug. [arguments]: Clean up .o and src after build. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add geomyidae.ng02017-12-01
| | | | | | * gnu/packages/web.scm (geomyidae): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-evil-matchit.Mike Gerwitz2017-12-01
| | | | | | * gnu/packages/emacs.scm (emacs-evil-matchit): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: git: Run tests sequentially.Ludovic Courtès2017-12-01
| | | | | | | | Fixes <https://bugs.gnu.org/29512>. Reported by George myglc2 Clemmer <myglc2@gmail.com>. * gnu/packages/version-control.scm (git)[arguments]: Add #:parallel-tests?.
* gnu: elogind: Remove "uaccess" tag usage in "seat-late" rules.Ludovic Courtès2017-12-01
| | | | | * gnu/packages/freedesktop.scm (elogind)[arguments]: Add 'remove-uaccess-tag' phase.
* gnu: linux-libre: Update to 4.14.3.Mark H Weaver2017-12-01
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.3. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.66.Mark H Weaver2017-12-01
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.66.
* gnu: linux-libre@4.4: Update to 4.4.103.Mark H Weaver2017-12-01
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.103.
* gnu: qemu: Enable seccomp support.Rutger Helling2017-11-30
| | | | | | * gnu/packages/virtualization.scm (qemu)[inputs]: Add libseccomp. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: fish-guix: Update to 0.1.2.1.ng02017-11-30
| | | | | | | * gnu/packages/shells.scm (fish-guix): Update to 0.1.2.1. (license): Switch to bsd-3. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* vm: Filter out file systems that refer to UUIDs or labels.Ludovic Courtès2017-11-30
| | | | | * gnu/system/vm.scm (virtualized-operating-system)[user-file-systems]: Filter out things that refer to file system UUIDs or labels.
* gnu: monero-core: Fix missing dependency.Vasile Dumitrascu2017-11-30
| | | | | | * gnu/packages/finance.scm (monero-core)[inputs]: Add readline. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add xautolock.Mike Gerwitz2017-11-30
| | | | | | * gnu/packages/xdisorg.scm (xautolock): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: jellyfish: Update to 2.2.7.Ricardo Wurmus2017-11-30
| | | | | | * gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7. [native-inputs]: Add pkg-config. [inputs]: Add htslib.
* gnu: r-bigmemory: Update to 4.5.31.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31. [propagated-inputs]: Remove r-r-utils.
* gnu: r-cowplot: Update to 0.9.1.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1. [propagated-inputs]: Add r-scales.
* gnu: r-rcppprogress: Update to 0.4.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4. [propagated-inputs]: Add r-devtools.
* gnu: r-rmarkdown: Update to 1.8.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8. [propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
* gnu: r-batchjobs: Update to 1.7.Ricardo Wurmus2017-11-30
| | | | | | * gnu/packages/statistics.scm (r-batchjobs): Update to 1.7. [propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove r-fail and r-stringr.
* gnu: r-pracma: Update to 2.1.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
* gnu: r-annotationhub: Update to 2.10.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
* gnu: r-msnid: Update to 1.12.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
* gnu: r-maldiquant: Update to 1.17.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
* gnu: r-genomicalignments: Update to 1.14.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
* gnu: r-limma: Update to 3.34.2.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
* gnu: r-variantannotation: Update to 1.24.2.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
* gnu: r-getopt: Update to 1.20.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
* gnu: r-gseabase: Update to 1.40.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
* gnu: r-dexseq: Update to 1.24.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
* gnu: r-deseq2: Update to 1.18.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
* gnu: r-annotate: Update to 1.56.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
* gnu: r-circlize: Update to 0.4.2.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
* gnu: r-rcpp: Update to 0.12.14.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
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