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* gnu: Remove redundant cmake libdir configure flags.•••* gnu/packages/bioinformatics.scm (imp)[arguments]: Remove CMAKE_INSTALL_LIBDIR flag. * gnu/packages/calendar.scm (libical): Same. * gnu/packages/engineering.scm (kicad): Same. * gnu/packages/games.scm (openrct2, mgba): Same. * gnu/packages/gl.scm (virtualgl): Same. * gnu/packages/image-processing.scm (mia): Same. * gnu/packages/linux.scm (rdma-core): Same. * gnu/packages/machine-learning.scm (dlib): Same. * gnu/packages/maths.scm (lapack, superlu, z3): Same. * gnu/packages/password-utils.scm (keepassxc): Same. * gnu/packages/photo.scm (darktable): Same. * gnu/packages/rdesktop.scm (freerdp): Same. Efraim Flashner2017-12-19
* gnu: ruby: Remove graft for 2.4.3.•••* gnu/packages/ruby.scm (ruby): Update to 2.4.3. (ruby-2.4.3): Remove variable. Marius Bakke2017-12-19
* gnu: openssl: Remove graft for 1.0.2n.•••* gnu/packages/tls.scm (openssl): Update to 1.0.2n. (openssl-1.0.2n): Remove variable. Marius Bakke2017-12-19
* Merge branch 'master' into core-updatesMarius Bakke2017-12-19
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| * gnu: termite: Update to 13.•••* gnu/packages/terminals.scm (termite): Update to 13. Marius Bakke2017-12-19
| * gnu: pcsc-lite: Update to 1.8.23.•••* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23. [arguments]<#:configure-flags>: Add "--disable-libsystemd". [license]: Adjust to removed sd-daemon files. Marius Bakke2017-12-19
| * gnu: qemu: Update to 2.10.2.•••* gnu/packages/patches/qemu-CVE-2017-15118.patch, gnu/packages/patches/qemu-CVE-2017-15119.patch, gnu/packages/patches/qemu-CVE-2017-15268.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/virtualization.scm (qemu): Update to 2.10.2. [source](patches): Remove obsolete. Marius Bakke2017-12-19
| * gnu: libjpeg-turbo: Update to 1.5.3.•••* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.3. Marius Bakke2017-12-18
| * gnu: libsodium: Update to 1.0.16.•••* gnu/packages/crypto.scm (libsodium): Update to 1.0.16. Marius Bakke2017-12-18
| * gnu: expect: Update to 5.45.3.•••* gnu/packages/tcl.scm (expect): Update to 5.45.3. Marius Bakke2017-12-18
| * gnu: deutex: Update to 5.1.0.•••* gnu/packages/games.scm (deutex): Update to 5.1.0. Kei Kebreau2017-12-18
| * gnu: emacspeak: Update to 47.0.•••* gnu/packages/emacs.scm (emacspeak): Update to 47.0. [source]: Remove snippet. [arguments]: Set SHELL environment variable. Kei Kebreau2017-12-18
| * gnu: rsync: Patch CVE-2017-{16548,17433,17434}.•••* gnu/packages/rsync.scm (rsync)[source]: Add patches. [properties]: Mark CVE-2017-15994 as not relevant. * gnu/packages/patches/rsync-CVE-2017-16548.patch, gnu/packages/patches/rsync-CVE-2017-17433.patch, gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them. Efraim Flashner2017-12-18
| * gnu: psm: Update home page URL.•••* gnu/packages/linux.scm (psm)[home-page]: Update. [source](uri): Use it. Ludovic Courtès2017-12-18
| * gnu: Fix ambiguous 'zip' reference.•••* gnu/packages/photo.scm: Hide 'zip' from (srfi srfi-1). Ludovic Courtès2017-12-18
| * system: examples: Add a template for BeagleBone Black.•••* gnu/system/examples/beaglebone-black.tmpl: New file. * Makefile.am (EXAMPLES): Add it. * gnu/system/install.scm (/etc/configuration-files): Add it. Mathieu Othacehe2017-12-18
| * gnu: claws-mail: Update to 3.16.0.•••* gnu/packages/mail.scm (claws-mail): Update to 3.16.0. Tobias Geerinckx-Rice2017-12-18
| * services: nginx: Allow to add raw content to the server blocks.•••* doc/guix.texi (Web Services): Document 'raw-content'. * gnu/services/web.scm (<nginx-server-configuration>)[raw-content]: New field. (emit-nginx-server-config): Add it. Clément Lassieur2017-12-18
| * services: nginx: Replace 'http-port' and 'https-port' with 'listen'.•••* doc/guix.texi (Web Services, Version Control Services): Update accordingly. * gnu/services/certbot.scm (certbot-nginx-server-configurations): Likewise. * gnu/services/version-control.scm (%cgit-configuration-nginx): Likewise. * gnu/services/web.scm (<nginx-server-configuration>, emit-nginx-server-config): Likewise. * gnu/tests/version-control.scm (%cgit-configuration-nginx, %git-nginx-configuration): Likewise. * gnu/tests/web.scm (%nginx-servers, %php-fpm-nginx-server-blocks): Likewise. Clément Lassieur2017-12-18
| * gnu: r-seurat: Update to 2.1.0.•••* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0. [propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica, r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr, r-rcppeigen, r-fastica. Ricardo Wurmus2017-12-18
| * gnu: Add r-diffusionmap.•••* gnu/packages/graph.scm (r-diffusionmap): New variable. Ricardo Wurmus2017-12-18
| * gnu: Add r-ggjoy.•••* gnu/packages/cran.scm (r-ggjoy): New variable. Ricardo Wurmus2017-12-18
| * gnu: Add r-ggridges.•••* gnu/packages/cran.scm (r-ggridges): New variable. Ricardo Wurmus2017-12-18
| * gnu: Add r-scatterplot3d.•••* gnu/packages/cran.scm (r-scatterplot3d): New variable. Ricardo Wurmus2017-12-18
| * gnu: Add r-sdmtools.•••* gnu/packages/cran.scm (r-sdmtools): New variable. Ricardo Wurmus2017-12-18
| * gnu: Add r-dtw.•••* gnu/packages/cran.scm (r-dtw): New variable. Ricardo Wurmus2017-12-18
| * gnu: Add r-ica.•••* gnu/packages/cran.scm (r-ica): New variable. Ricardo Wurmus2017-12-18
| * gnu: r-seurat: Fix ModularityOptimizer.jar.•••* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class attribute in manifest. Ricardo Wurmus2017-12-18
| * gnu: qmidiarp: Update to 0.6.5.•••* gnu/packages/music.scm (qmidiarp): Update to 0.6.5. Ricardo Wurmus2017-12-18
| * gnu: Add noise-repellent.•••* gnu/packages/audio.scm (noise-repellent): New variable. Ricardo Wurmus2017-12-18
| * gnu: Add aj-snapshot.•••* gnu/packages/music.scm (aj-snapshot): New variable. Ricardo Wurmus2017-12-18
| * gnu: Add jack-capture.•••* gnu/packages/music.scm (jack-capture): New variable. Ricardo Wurmus2017-12-18
| * gnu: Add qjackrcd.•••* gnu/packages/audio.scm (qjackrcd): New variable. Ricardo Wurmus2017-12-18
| * gnu: Add whysynth.•••* gnu/packages/music.scm (whysynth): New variable. Ricardo Wurmus2017-12-18
| * gnu: Add sonivox-eas.•••* gnu/packages/music.scm (sonivox-eas): New variable. Ricardo Wurmus2017-12-18
| * vm: Pass the host's /dev/urandom to the guest at /dev/hwrng.•••* gnu/build/vm.scm (load-in-linux-vm): Use QEMU's virtio-rng-pci. * gnu/system/vm.scm (common-qemu-options): Likewise. Leo Famulari2017-12-18
| * gnu: openssl: Update replacement to 1.0.2n [fixes CVE-2017-{3737,3738}].•••* gnu/packages/tls.scm (openssl)[replacement]: Use openssl-1.0.2n. (openssl-1.0.2m): Replace with ... (openssl-1.0.2n): ... this updated version. Update comment. Mark H Weaver2017-12-17
| * gnu: Add mod-wsgi.•••* gnu/packages/web.scm (mod-wsgi): New variable. Christopher Baines2017-12-17
| * gnu: system: vm: Use loose cache for 9p file system.•••This improves the performance of the shared store for operations involving lots of files, e.g. searching through the store. * gnu/system/vm.scm (mapping->file-system): Add cache=loose to options. Christopher Baines2017-12-17
| * gnu: grammalecte: Fix 'license' field.•••* gnu/packages/dictionaries.scm (grammalecte)[license]: Change name to 'gpl3+'. Ludovic Courtès2017-12-17
| * services: certbot: Fix certbot renewal job.•••Quote the list of hosts, to avoid generating a broken job definition. * gnu/services/certbot.scm (certbot-renewal-jobs): Quote the hosts when passing them in to the job gexp. Christopher Baines2017-12-17
| * gnu: Add grammalecte.•••* gnu/packages/dictionaries.scm (grammalecte): New variable. Nicolas Goaziou2017-12-17
| * gnu: gourmet: Fix runtime failure and enhance plugin.•••Fixes <https://bugs.gnu.org/29227>. Reported by Caleb Herbert <csh@bluehome.net>. * gnu/packages/nutrition.scm (gourmet)[inputs]: Add python-lxml. [arguments]: Custom install phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Mark Meyer2017-12-17
| * gnu: pinentry-tty: Add meta-data for 'guix refresh'.•••* gnu/packages/gnupg.scm (pinentry-tty)[properties]: New field. Ludovic Courtès2017-12-17
| * services: cleanup: Remove "/run/udev/watch.old" directory.•••* gnu/services.scm (cleanup-gexp): Remove "/run/udev/watch.old" directory. Danny Milosavljevic2017-12-17
| * gnu: global: Update to 6.6.1 [fixes CVE-2017-17531].•••* gnu/packages/code.scm (global): Update to 6.6.1. Efraim Flashner2017-12-17
| * gnu: python-dulwich: Update to 0.18.6 [fixes CVE-2017-16228].•••* gnu/packages/python.scm (python-dulwich, python2-dulwich): Update to 0.18.6. Leo Famulari2017-12-16
| * gnu: krita: Enhance krita.•••* gnu/packages/kde.scm (krita)[inputs]: Add libjpeg-turbo, ilmbase and openexr. [native-inputs]: Add vc. [arguments]: Set path to headers for ilmbase. Signed-off-by: Kei Kebreau <kkebreau@posteo.net> Mark Meyer2017-12-16
| * gnu: borg: Fix a data loss bug.•••See <https://github.com/borgbackup/borg/issues/3444> for more information. * gnu/packages/patches/borg-fix-archive-corruption-bug.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/backup.scm (borg)[source]: Use it. Leo Famulari2017-12-16
| * gnu: guix: Update snapshot to 02345c.•••* gnu/packages/package-management.scm (guix): Update to 02345c. Mathieu Othacehe2017-12-16
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