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* gnu: Add r-seqminer.•••* gnu/packages/bioinformatics.scm (r-seqminer): New variable. Ricardo Wurmus2017-01-17
* gnu: Add r-compquadform.•••* gnu/packages/statistics.scm (r-compquadform): New variable. Ricardo Wurmus2017-01-17
* gnu: Add ribodiff.•••* gnu/packages/bioinformatics.scm (ribodiff): New variable. Ricardo Wurmus2017-01-17
* gnu: Add hisat2.•••* gnu/packages/bioinformatics.scm (hisat2): New variable. Ricardo Wurmus2017-01-17
* gnu: Add r-fivethirtyeight.•••* gnu/packages/statistics.scm (r-fivethirtyeight): New variable. Ricardo Wurmus2017-01-17
* gnu: powertabeditor: Update to 2.0.0-alpha9.•••* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha9. [source]: Simplify snippet. [arguments]: Adjust phases; remove unnecessary configure flag. Ricardo Wurmus2017-01-17
* Revert "gnu: cups-filters: Disable mutool integration."•••This change would cause 594 packages to be rebuilt, so it was moved to the staging branch. This reverts commit 58a7bbc5fe52f20910fb0fe7fddb9012f2049034. Leo Famulari2017-01-17
* gnu: webkitgtk: Update to 2.14.3 [security fixes].•••Fixes CVE-2016-{7586,7589,7592,7599,7623,7632,7635,7639,7641,7645,7652,7654,7656}. * gnu/packages/webkit.scm (webkitgtk): Update to 2.14.3. Leo Famulari2017-01-17
* gnu: cups-filters: Disable mutool integration.•••* gnu/packages/cups.scm (cups-filters)[arguments]: Add ‘--disable-mutool’ to #:configure-flags. [inputs]: Remove mupdf. Tobias Geerinckx-Rice2017-01-17
* gnu: libpsl: Update to 0.17.0.•••* gnu/packages/web.scm (libpsl): Update to 0.17.0. Tobias Geerinckx-Rice2017-01-17
* gnu: proxychains-ng: Update to 4.12.•••* gnu/packages/networking.scm (proxychains-ng): Update to 4.12. Tobias Geerinckx-Rice2017-01-17
* gnu: password-store: Install bash completions.•••* gnu/packages/password-utils.scm (password-store)[arguments]: Add 'install-shell-completions' phase. Marius Bakke2017-01-17
* gnu: gnucash: Update to 2.6.15.•••* gnu/packages/gnucash.scm (gnucash): Update to 2.6.15. Ricardo Wurmus2017-01-17
* gnu: Add proj.4.•••* gnu/packages/geo.scm (proj.4): New variable. (gnome-maps): Use license: prefix. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Björn Höfling2017-01-17
* gnu: xscreensaver: Update to 5.36.•••* gnu/packages/xdisorg.scm (xscreensaver): Update to 5.36. Marius Bakke2017-01-17
* gnu: perl-image-exiftool: Update to 10.40.•••* gnu/packages/photo.scm (perl-image-exiftool): Update to 10.40. [synopsis, description]: Mention more capabilities. Leo Famulari2017-01-17
* gnu: ghc-quickcheck-instances: Update to 0.3.12.•••* gnu/packages/haskell.scm (ghc-quickcheck-instances): Update to 0.3.12. [inputs]: Add ghc-scientific and ghc-vector. Ricardo Wurmus2017-01-17
* gnu: imagemagick: Update to 6.9.7-4 [security fixes].•••* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-4. Leo Famulari2017-01-16
* gnu: Add scrypt.•••* gnu/packages/crypto.scm (scrypt): New variable. Leo Famulari2017-01-16
* gnu: Add emacs-stripe-buffer.•••* gnu/packages/emacs.scm (emacs-stripe-buffer): New variable. Ricardo Wurmus2017-01-16
* gnu: Add emacs-git-timemachine.•••* gnu/packages/emacs.scm (emacs-git-timemachine): New variable. Ricardo Wurmus2017-01-16
* gnu: guile-sqlite3: Provide a new source URL.•••* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Change. Ludovic Courtès2017-01-16
* file-systems: 'file-system-needed-for-boot?' is #t for parents of the store.•••Suggested by John Darrington <john@darrington.wattle.id.au>. * gnu/system/file-systems.scm (%not-slash): New variable. (file-prefix?): New procedure. (file-system-needed-for-boot?): Use it to check whether FS holds the store. * tests/file-systems.scm ("file-system-needed-for-boot?"): New test. * gnu/tests/install.scm (%separate-store-os)[file-systems]: Remove 'needed-for-boot?' field for "/gnu". Ludovic Courtès2017-01-16
* gnu: Add r-centipede.•••* gnu/packages/bioinformatics.scm (r-centipede): New variable. Ricardo Wurmus2017-01-16
* gnu: Add ocaml-lwt.•••* gnu/packages/ocaml.scm (ocaml-lwt): New variable. Julien Lepiller2017-01-16
* gnu: Add ocaml-ssl.•••* gnu/packages/ocaml.scm (ocaml-ssl): New variable. Julien Lepiller2017-01-16
* gnu: Add ocaml-react.•••* gnu/packages/ocaml.scm (ocaml-react): New variable. Julien Lepiller2017-01-16
* gnu: Add ocaml-ppx-tools.•••* gnu/packages/ocaml.scm (ocaml-ppx-tools): New variable. Julien Lepiller2017-01-16
* gnu: Add ocaml-alcotest.•••* gnu/packages/ocaml.scm (ocaml-alcotest): New variable. Julien Lepiller2017-01-16
* gnu: Add ocaml-astring.•••* gnu/packages/ocaml.scm (ocaml-astring): New variable. Julien Lepiller2017-01-16
* gnu: Add ocaml-fmt.•••* gnu/packages/ocaml.scm (ocaml-fmt): New variable. Julien Lepiller2017-01-16
* gnu: camlzip: Install both modules.•••* gnu/packages/ocaml.scm (camlzip) [arguments]: Install both zip and camlzip modules. Julien Lepiller2017-01-16
* gnu: Add python-autopep8.•••* gnu/packages/python.scm (python-autopep8, python2-autopep8): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thomas Danckaert2017-01-16
* gnu: kdevelop: Set more paths in wrapper script.•••* gnu/packages/kde.scm (kdevelop)[arguments]: Add more paths in wrap-executable: add "/share" output of kdevplatform and kcmutils to $XDG_DATA_DIRS; add "lib/plugins" from user profile to $QT_PLUGIN_PATH. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thomas Danckaert2017-01-16
* gnu: kdevelop: Update to 5.0.3.•••* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.0.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thomas Danckaert2017-01-16
* gnu: linux-libre: Update to 4.9.4.•••* gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash) (linux-libre): Update to 4.9.4. Mark H Weaver2017-01-16
* gnu: linux-libre@4.4: Update to 4.4.43.•••* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.43. Mark H Weaver2017-01-16
* gnu: dwm: Add '.desktop' file.•••Fixes <https://bugs.gnu.org/25438>. * gnu/packages/suckless.scm (dwm)[arguments]: Add 'install-xsession' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng02017-01-16
* gnu: dwm: Use modify-phases.•••* gnu/packages/suckless.scm (dwm): Use modify-phases. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng02017-01-16
* services: Export 'service-extension' procedures.•••* gnu/services.scm: Export service-extension-target and service-extension-compute. This allows for greater extensiblity of services by enabling service extensions to be wrapped. For example, the parameters passed to the compute function can be modified, or the return value of the compute function can be modified. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Christopher Baines2017-01-16
* gnu: zathura-pdf-poppler: Update to 0.2.7.•••* gnu/packages/pdf.scm (zathura-pdf-poppler): Update to 0.2.7. Marius Bakke2017-01-16
* gnu: zathura-djvu: Update to 0.2.6.•••* gnu/packages/pdf.scm (zathura-djvu): Update to 0.2.6. Marius Bakke2017-01-16
* gnu: zathura-ps: Update to 0.2.4.•••* gnu/packages/pdf.scm (zathura-ps): Update to 0.2.4. Marius Bakke2017-01-16
* gnu: zathura-cb: Update to 0.1.6.•••* gnu/packages/pdf.scm (zathura-cb): Update to 0.1.6. Marius Bakke2017-01-16
* gnu: zathura: Update to 0.3.7.•••* gnu/packages/pdf.scm (zathura): Update to 0.3.7. Marius Bakke2017-01-16
* gnu: girara: Update to 0.2.7.•••* gnu/packages/gtk.scm (girara): Update to 0.2.7. Marius Bakke2017-01-16
* gnu: vim: Update to 8.0.0194.•••* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0194. Marius Bakke2017-01-16
* gnu: ccid: Update to 1.4.26.•••* gnu/packages/security-token.scm (ccid): Update to 1.4.26. Marius Bakke2017-01-16
* gnu: dnscrypt-proxy: Update to 1.9.2.•••* gnu/packages/dns.scm (dnscrypt-proxy): Update to 1.9.2. Marius Bakke2017-01-16
* Merge branch 'gnome-updates'Mark H Weaver2017-01-16
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