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* gnu: libgcrypt: Fix CVE-2018-0495.•••* gnu/packages/gnupg.scm (libgcrypt)[replacement]: New field. (libgcrypt/fixed): New package. Efraim Flashner2018-06-14
* gnu: Add python-dns-lexicon.•••* gnu/packages/python.scm (python-dns-lexicon, python2-dns-lexicon): New variables. Clément Lassieur2018-06-14
* gnu: Add python-pynamecheap.•••* gnu/packages/python.scm (python-pynamecheap, python2-pynamecheap): New variables. Clément Lassieur2018-06-14
* gnu: Add python-tldextract.•••* gnu/packages/python.scm (python-tldextract, python2-tldextract): New variables. Clément Lassieur2018-06-14
* gnu: Add python-requests-file.•••* gnu/packages/python.scm (python-requests-file, python2-requests-file): New variables. Clément Lassieur2018-06-14
* gnu: Add tmate.•••* gnu/packages/terminals.scm (tmate): New variable. Arun Isaac2018-06-14
* services: tor: Mark end of auto-generated configuration block.•••* gnu/services/networking.scm (tor-configuration->torrc): Clearly demarcate auto-generated lines. Tobias Geerinckx-Rice2018-06-14
* Fix typo in (gnu packages gtk) header.•••* gnu/packages/gtk.scm: Fix ‘Coypright’ typo. Tobias Geerinckx-Rice2018-06-14
* gnu: python-gnupg: Return #t from phase.•••* gnu/packages/gnupg.scm (python-gnupg)[arguments]: Substitute INVOKE for SYSTEM*. Tobias Geerinckx-Rice2018-06-14
* gnu: python-gnupg: Update to 0.4.3.•••* gnu/packages/gnupg.scm (python-gnupg): Update to 0.4.3. [arguments]: Remove obsolete substitution. Tobias Geerinckx-Rice2018-06-14
* gnu: sssd: Update to 1.16.2.•••* gnu/packages/sssd.scm (sssd): Update to 1.16.2. [native-inputs]: Add libxml2. Tobias Geerinckx-Rice2018-06-14
* gnu: pigx-scrnaseq: Update to 0.0.5.•••* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.5. [inputs]: Add python-magic. Ricardo Wurmus2018-06-13
* gnu: emacs-orgalist: Update to 1.8.•••* gnu/packages/emacs.scm (emacs-orgalist): Update to 1.8. Nicolas Goaziou2018-06-13
* gnu: emacspeak: Update to 48.0.•••* gnu/packages/emacs.scm (emacspeak): Update to 48.0. [arguments]: Use 'invoke'. In the 'install' phase, add additional installation directories and fix the launch script substitution. [inputs]: Add emacs and perl. [native-inputs]: Remove emacs-minimal. Kei Kebreau2018-06-13
* gnu: r-factoextra: Fix syntax error.•••* gnu/packages/cran.scm (r-factoextra)[description]: Fix syntax error. Ricardo Wurmus2018-06-13
* gnu: r-seurat: Update to 2.3.2.•••* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.2. [propagated-inputs]: Add r-hdf5r. Ricardo Wurmus2018-06-13
* gnu: r-s4vectors: Update to 0.18.3.•••* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.3. Ricardo Wurmus2018-06-13
* gnu: r-biocviews: Update to 1.48.1.•••* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.1. Ricardo Wurmus2018-06-13
* gnu: r-rjson: Update to 0.2.20.•••* gnu/packages/web.scm (r-rjson): Update to 0.2.20. Ricardo Wurmus2018-06-13
* gnu: r-zoo: Update to 1.8-2.•••* gnu/packages/statistics.scm (r-zoo): Update to 1.8-2. Ricardo Wurmus2018-06-13
* gnu: r-rmarkdown: Update to 1.10.•••* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.10. [propagated-inputs]: Add r-tinytex. Ricardo Wurmus2018-06-13
* gnu: r-highr: Update to 0.7.•••* gnu/packages/statistics.scm (r-highr): Update to 0.7. Ricardo Wurmus2018-06-13
* gnu: r-stringi: Update to 1.2.3.•••* gnu/packages/statistics.scm (r-stringi): Update to 1.2.3. Ricardo Wurmus2018-06-13
* gnu: r-munsell: Update to 0.5.0.•••* gnu/packages/statistics.scm (r-munsell): Update to 0.5.0. Ricardo Wurmus2018-06-13
* gnu: r-rgooglemaps: Update to 1.4.2.•••* gnu/packages/geo.scm (r-rgooglemaps): Update to 1.4.2. Ricardo Wurmus2018-06-13
* gnu: r-reticulate: Update to 1.8.•••* gnu/packages/cran.scm (r-reticulate): Update to 1.8. Ricardo Wurmus2018-06-13
* gnu: r-later: Update to 0.7.3.•••* gnu/packages/cran.scm (r-later): Update to 0.7.3. Ricardo Wurmus2018-06-13
* gnu: r-radiant-data: Update to 0.9.5.•••* gnu/packages/cran.scm (r-radiant-data): Update to 0.9.5. [propagated-inputs]: Remove r-plyr; add r-glue, r-plotly, r-readxl, r-rlang, and r-writexl. Ricardo Wurmus2018-06-13
* gnu: r-cubature: Update to 1.3-13.•••* gnu/packages/cran.scm (r-cubature): Update to 1.3-13. Ricardo Wurmus2018-06-13
* gnu: r-extradistr: Update to 1.8.9.•••* gnu/packages/cran.scm (r-extradistr): Update to 1.8.9. Ricardo Wurmus2018-06-13
* gnu: r-statnet-common: Update to 4.1.2.•••* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.2. [propagated-inputs]: Add r-coda. Ricardo Wurmus2018-06-13
* gnu: r-stringdist: Update to 0.9.5.1.•••* gnu/packages/cran.scm (r-stringdist): Update to 0.9.5.1. Ricardo Wurmus2018-06-13
* gnu: r-rcpproll: Update to 0.3.0.•••* gnu/packages/cran.scm (r-rcpproll): Update to 0.3.0. Ricardo Wurmus2018-06-13
* gnu: r-extremes: Update to 2.0-9.•••* gnu/packages/cran.scm (r-extremes): Update to 2.0-9. Ricardo Wurmus2018-06-13
* gnu: r-sp: Update to 1.3-1.•••* gnu/packages/cran.scm (r-sp): Update to 1.3-1. Ricardo Wurmus2018-06-13
* gnu: r-getoptlong: Update to 0.1.7.•••* gnu/packages/cran.scm (r-getoptlong): Update to 0.1.7. Ricardo Wurmus2018-06-13
* gnu: r-circlize: Update to 0.4.4.•••* gnu/packages/cran.scm (r-circlize): Update to 0.4.4. Ricardo Wurmus2018-06-13
* gnu: r-globaloptions: Update to 0.1.0.•••* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.0. Ricardo Wurmus2018-06-13
* gnu: Add r-writexl.•••* gnu/packages/cran.scm (r-writexl): New variable. Ricardo Wurmus2018-06-13
* gnu: Add r-hdf5r.•••* gnu/packages/cran.scm (r-hdf5r): New variable. Ricardo Wurmus2018-06-13
* gnu: Add r-nbclust.•••* gnu/packages/cran.scm (r-nbclust): New variable. Ricardo Wurmus2018-06-13
* gnu: Add r-factoextra.•••* gnu/packages/cran.scm (r-factoextra): New variable. Ricardo Wurmus2018-06-13
* gnu: Add r-factominer.•••* gnu/packages/cran.scm (r-factominer): New variable. Ricardo Wurmus2018-06-13
* gnu: Add r-flashclust.•••* gnu/packages/cran.scm (r-flashclust): New variable. Ricardo Wurmus2018-06-13
* gnu: Add r-ellipse.•••* gnu/packages/cran.scm (r-ellipse): New variable. Ricardo Wurmus2018-06-13
* gnu: Add r-ggpubr.•••* gnu/packages/cran.scm (r-ggpubr): New variable. Ricardo Wurmus2018-06-13
* gnu: Add r-ggsignif.•••* gnu/packages/cran.scm (r-ggsignif): New variable. Ricardo Wurmus2018-06-13
* gnu: Add r-ggsci.•••* gnu/packages/cran.scm (r-ggsci): New variable. Ricardo Wurmus2018-06-13
* gnu: openrct2: Update to 0.2.0.•••* gnu/packages/games.scm (openrct2-title-sequences): New variable. * gnu/packages/games.scm (openrct2-objects): New variable. * gnu/packages/games.scm (openrct2): Update to 0.2.0. [arguments]: Add phases 'fix-usr-share-path&add-data, 'fix-gcc7 and 'get-rid-of-errors. [inputs]: Add icu4c, openrct2-objects, openrct2-title-sequences. [native-inputs]: Add gcc@7. Rutger Helling2018-06-13
* tests: Honor the return value of 'start-service'.•••Since commit dc7b3e56337ee9d8dcd8fe7d5cab71ef536d024f, 'start-service' returns the Shepherd's representation of the service as a sexp, and '#f' if the service fails to start. Also, it doesn't throw an exception when the service fails to start, so relying on an exception instead of relying on its return value is a false positive. * gnu/tests/base.scm (run-nss-mdns-test): Split tests so to check the return value of 'start-service'. (run-mcron-test, run-nss-mdns-test): Use 'test-assert' with the return value of 'start-service'. * gnu/tests/admin.scm (run-tailon-test): Idem. * gnu/tests/dict.scm (run-dicod-test): Idem. * gnu/tests/mail.scm (run-opensmtpd-test, run-exim-test, run-dovecot-test): Idem. * gnu/tests/messaging.scm (run-xmpp-test, run-bitlbee-test): Idem. * gnu/tests/nfs.scm (run-nfs-test): Idem. * gnu/tests/rsync.scm (run-rsync-test): Idem. * gnu/tests/ssh.scm (run-ssh-test): Idem. * gnu/tests/version-control.scm (run-cgit-test, run-git-http-test): Idem. * gnu/tests/web.scm (run-php-fpm-test): Idem. Clément Lassieur2018-06-13
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