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* gnu: rss-bridge: Update to 2019-01-13.Arun Isaac2019-01-31
| | | | | | * gnu/packages/web.scm (rss-bridge): Update to 2019-01-13. [source]: Use git-fetch. [native-inputs]: Remove gzip and tar.
* gnu: scdoc: Update to 1.8.1.Rutger Helling2019-01-31
| | | | * gnu/packages/man.scm (scdoc): Update to 1.8.1.
* gnu: mame: Update to 0.206.Nicolas Goaziou2019-01-30
| | | | * gnu/packages/emulators.scm (mame): Update to 0.206.
* gnu: Add lhasa.Kei Kebreau2019-01-30
| | | | | | * gnu/packages/compression.scm (lhasa): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: star: Update to 2.7.0a.Ricardo Wurmus2019-01-30
| | | | * gnu/packages/bioinformatics.scm (star): Update to 2.7.0a.
* gnu: icecat: Update to 60.5.0-guix1 [security-fixes].Mark H Weaver2019-01-29
| | | | | | | | | | | Includes fixes for CVE-2018-18500, CVE-2018-18501, and CVE-2018-18505. * gnu/packages/gnuzilla.scm (icecat): Update to 60.5.0-guix1. [version]: Use %icecat-version. [source]: Inherit from 'icecat-source'. Remove obsolete patches. * gnu/packages/patches/icecat-avoid-bundled-libraries.patch, gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch, gnu/packages/patches/icecat-use-system-media-libs.patch: Adapt to 60.5.0.
* gnu: icecat: Add icecat-source.Mark H Weaver2019-01-29
| | | | | | | * gnu/packages/gnuzilla.scm (computed-origin-method): New variable. (%icecat-version, icecat-source): New variables. * gnu/packages/patches/icecat-makeicecat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: clang-runtime@3.5: Fix compilation on glibc 2.28.Ludovic Courtès2019-01-29
| | | | | | | Reported by zimoun <zimon.toutoune@gmail.com>. * gnu/packages/llvm.scm (clang-runtime-3.5): Add "clang-3.5-libsanitizer-ustat-fix.patch".
* gnu: guile-commonmark: Update to 0.1.2.Ludovic Courtès2019-01-29
| | | | | * gnu/packages/guile-xyz.scm (guile-commonmark): Update to 0.1.2. [source](modules, snippet): Remove.
* gnu: guile-git: Update to 0.2.0.Ludovic Courtès2019-01-29
| | | | * gnu/packages/guile.scm (guile-git): Update to 0.2.0.
* gnu: Mutt: Update to 1.11.2.Leo Famulari2019-01-29
| | | | * gnu/packages/mail.scm (mutt): Update to 1.11.2.
* gnu: Add texlive-latex-beamer.Ricardo Wurmus2019-01-29
| | | | * gnu/packages/tex.scm (texlive-latex-beamer): New variable.
* gnu: texlive-latex-seminar: Copy files to output.Ricardo Wurmus2019-01-29
| | | | | | * gnu/packages/tex.scm (texlive-latex-seminar)[build-system]: Use trivial-build-system. [arguments]: Copy files to output.
* gnu: clojure: Update to 1.10.0.Mathieu Lirzin2019-01-29
| | | | | * gnu/packages/clojure.scm (clojure): Update to 1.10.0. [source]: Use 'git-fetch'.
* gnu: kitty: Update to 0.13.3.Rutger Helling2019-01-29
| | | | | | * gnu/packages/terminals.scm (kitty): Update to 0.13.3. [inputs]: Replace python2-pygments with python-pygments. Add wayland. [arguments]: Add 'hard-code-libegl phase.
* gnu: x265: Update to 3.0.Efraim Flashner2019-01-29
| | | | | | | * gnu/packages/video.scm (x265): Update to 3.0. [source]: Remove patch. * gnu/packages/patches/x265-detect512-all-arches.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: guix: Update to 4bddd12.Ludovic Courtès2019-01-28
| | | | * gnu/packages/package-management.scm (guix): Update to 4bddd12.
* gnu: Add missing file.Ricardo Wurmus2019-01-28
| | | | * gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/installer/newt/user.scm.
* gnu: Add openjdk 11.Gábor Boskovits2019-01-28
| | | | | | * gnu/packages/java.scm (openjdk11): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
* gnu: fish: Use fish-foreign-env to source /etc/profile.Meiyo Peng2019-01-28
| | | | | | | * gnu/packages/shells.scm (fish): Use fish-foreign-env to source /etc/profile when user logs in. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add fish-foreign-env.Meiyo Peng2019-01-28
| | | | | | * gnu/packages/shells.scm (fish-foreign-env): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: fish: Update to 3.0.0.Meiyo Peng2019-01-28
| | | | | | | | | | | * gnu/packages/shells.scm (fish): Update to 3.0.0. [source]: Remove dead URL. [inputs]: Remove bc. Replace python-wrapper with python. [arguments]: Remove configure-flags. Enable fish to source /etc/fish/config.fish. Enable completions, functions and configurations in user's and system's guix profiles. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: youtube-dl: Update to 2019.01.27.Ludovic Courtès2019-01-28
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2019.01.27.
* gnu: fastcap: Fix build and use INVOKE.Ricardo Wurmus2019-01-28
| | | | | | * gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive-tiny with a texlive-union including texlive-fonts-amsfonts. [arguments]: Use INVOKE in build phases.
* gnu: scons: Update to 3.0.3.Ricardo Wurmus2019-01-28
| | | | | | | Fixes <https://bugs.gnu.org/34236>. * gnu/packages/python-xyz.scm (scons): Update to 3.0.3. [arguments]: Add "bootstrap" phase.
* gnu: r-genomicfeatures: Update to 1.34.2.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.34.2.
* gnu: r-variantannotation: Update to 1.28.10.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.28.10.
* gnu: r-rmpfr: Update to 0.7-2.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/cran.scm (r-rmpfr): Update to 0.7-2.
* gnu: r-waveslim: Update to 1.7.5.1.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/cran.scm (r-waveslim): Update to 1.7.5.1.
* gnu: r-activity: Update to 1.2.Ricardo Wurmus2019-01-28
| | | | | * gnu/packages/cran.scm (r-activity): Update to 1.2. [propagated-inputs]: Remove r-overlap.
* gnu: r-emmeans: Update to 1.3.2.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/cran.scm (r-emmeans): Update to 1.3.2.
* gnu: r-th-data: Update to 1.0-10.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/cran.scm (r-th-data): Update to 1.0-10.
* gnu: r-acceptancesampling: Update to 1.0-6.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/cran.scm (r-acceptancesampling): Update to 1.0-6.
* gnu: r-vioplot: Update to 0.3.0.Ricardo Wurmus2019-01-28
| | | | | * gnu/packages/cran.scm (r-vioplot): Update to 0.3.0. [propagated-inputs]: Add r-zoo.
* gnu: r-jomo: Update to 2.6-6.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/cran.scm (r-jomo): Update to 2.6-6.
* gnu: r-fitdistrplus: Update to 1.0-14.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/cran.scm (r-fitdistrplus): Update to 1.0-14.
* gnu: r-colorspace: Update to 1.4-0.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/cran.scm (r-colorspace): Update to 1.4-0.
* gnu: r-ggmap: Update to 2.6.2.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/cran.scm (r-ggmap): Update to 2.6.2.
* gnu: r-ranger: Update to 0.11.1.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/statistics.scm (r-ranger): Update to 0.11.1.
* gnu: r-prabclus: Update to 2.2-7.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.
* gnu: r-gplots: Update to 3.0.1.1.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/statistics.scm (r-gplots): Update to 3.0.1.1.
* gnu: r-hmisc: Update to 4.2-0.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/statistics.scm (r-hmisc): Update to 4.2-0.
* gnu: r-purrr: Update to 0.3.0.Ricardo Wurmus2019-01-28
| | | | | * gnu/packages/statistics.scm (r-purrr): Update to 0.3.0. [propagated-inputs]: Remove r-tibble.
* gnu: r-e1071: Update to 1.7-0.1.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/statistics.scm (r-e1071): Update to 1.7-0.1.
* gnu: r-rcpparmadillo: Update to 0.9.200.7.0.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.7.0.
* gnu: r-openssl: Update to 1.2.1.Ricardo Wurmus2019-01-28
| | | | | | * gnu/packages/statistics.scm (r-openssl): Update to 1.2.1. [native-inputs]: Add pkg-config. [propagated-inputs]: Add r-askpass.
* gnu: r-checkmate: Update to 1.9.1.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/statistics.scm (r-checkmate): Update to 1.9.1.
* gnu: r-data-table: Update to 1.12.0.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/statistics.scm (r-data-table): Update to 1.12.0.
* gnu: r-qtl: Update to 1.44-9.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/bioinformatics.scm (r-qtl): Update to 1.44-9.
* gnu: r-optparse: Update to 1.6.1.Ricardo Wurmus2019-01-28
| | | | * gnu/packages/bioinformatics.scm (r-optparse): Update to 1.6.1.
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