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* gnu: r-cowplot: Update to 0.9.4.•••* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.4. Ricardo Wurmus2019-01-12
* gnu: r-rann: Update to 2.6.1.•••* gnu/packages/statistics.scm (r-rann): Update to 2.6.1. Ricardo Wurmus2019-01-12
* gnu: r-sfsmisc: Update to 1.1-3.•••* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-3. Ricardo Wurmus2019-01-12
* gnu: r-rmarkdown: Update to 1.11.•••* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.11. [propagated-inputs]: Remove r-rprojroot. Ricardo Wurmus2019-01-12
* gnu: r-rstudioapi: Update to 0.9.0.•••* gnu/packages/statistics.scm (r-rstudioapi): Update to 0.9.0. Ricardo Wurmus2019-01-12
* gnu: r-git2r: Update to 0.24.0.•••* gnu/packages/statistics.scm (r-git2r): Update to 0.24.0. Ricardo Wurmus2019-01-12
* gnu: r-httr: Update to 1.4.0.•••* gnu/packages/statistics.scm (r-httr): Update to 1.4.0. Ricardo Wurmus2019-01-12
* gnu: r-commonmark: Update to 1.7.•••* gnu/packages/statistics.scm (r-commonmark): Update to 1.7. Ricardo Wurmus2019-01-12
* gnu: r-checkmate: Update to 1.9.0.•••* gnu/packages/statistics.scm (r-checkmate): Update to 1.9.0. Ricardo Wurmus2019-01-12
* gnu: r-backports: Update to 1.1.3.•••* gnu/packages/statistics.scm (r-backports): Update to 1.1.3. Ricardo Wurmus2019-01-12
* gnu: r-dbplyr: Update to 1.3.0.•••* gnu/packages/statistics.scm (r-dbplyr): Update to 1.3.0. Ricardo Wurmus2019-01-12
* gnu: r-tibble: Update to 2.0.0.•••* gnu/packages/statistics.scm (r-tibble): Update to 2.0.0. [propagated-inputs]: Add r-fansi and r-pkgconfig. Ricardo Wurmus2019-01-12
* gnu: r-rlang: Update to 0.3.1.•••* gnu/packages/statistics.scm (r-rlang): Update to 0.3.1. Ricardo Wurmus2019-01-12
* gnu: r-knitr: Update to 1.21.•••* gnu/packages/statistics.scm (r-knitr): Update to 1.21. [propagated-inputs]: Add r-xfun. Ricardo Wurmus2019-01-12
* gnu: r-markdown: Update to 0.9.•••* gnu/packages/statistics.scm (r-markdown): Update to 0.9. Ricardo Wurmus2019-01-12
* gnu: r-bh: Update to 1.69.0-1.•••* gnu/packages/statistics.scm (r-bh): Update to 1.69.0-1. Ricardo Wurmus2019-01-12
* gnu: r-pheatmap: Update to 1.0.12.•••* gnu/packages/statistics.scm (r-pheatmap): Update to 1.0.12. Ricardo Wurmus2019-01-12
* gnu: r-mgcv: Update to 1.8-26.•••* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-26. Ricardo Wurmus2019-01-12
* gnu: r-codetools: Update to 0.2-16.•••* gnu/packages/statistics.scm (r-codetools): Update to 0.2-16. Ricardo Wurmus2019-01-12
* gnu: r-class: Update to 7.3-15.•••* gnu/packages/statistics.scm (r-class): Update to 7.3-15. Ricardo Wurmus2019-01-12
* gnu: r-survival: Update to 2.43-3.•••* gnu/packages/statistics.scm (r-survival): Update to 2.43-3. Ricardo Wurmus2019-01-12
* gnu: r-argparse: Update to 2.0.0.•••* gnu/packages/cran.scm (r-argparse): Update to 2.0.0. [propagated-inputs]: Add r-r6; remove r-proto. Ricardo Wurmus2019-01-12
* gnu: r-callr: Update to 3.1.1.•••* gnu/packages/cran.scm (r-callr): Update to 3.1.1. [propagated-inputs]: Remove r-base64enc. Ricardo Wurmus2019-01-12
* gnu: r-readxl: Update to 1.2.0.•••* gnu/packages/cran.scm (r-readxl): Update to 1.2.0. [propagated-inputs]: Add r-progress. Ricardo Wurmus2019-01-12
* gnu: r-pracma: Update to 2.2.2.•••* gnu/packages/maths.scm (r-pracma): Update to 2.2.2. Ricardo Wurmus2019-01-12
* gnu: r-rcpparmadillo: Update to 0.9.200.5.0.•••* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.200.5.0. Ricardo Wurmus2019-01-12
* gnu: r-processx: Update to 3.2.1.•••* gnu/packages/cran.scm (r-processx): Update to 3.2.1. [propagated-inputs]: Remove r-assertthat, r-crayon, and r-testthat. Ricardo Wurmus2019-01-12
* gnu: r-sjlabelled: Update to 1.0.16.•••* gnu/packages/cran.scm (r-sjlabelled): Update to 1.0.16. [propagated-inputs]: Remove r-tibble and r-tidyselect. Ricardo Wurmus2019-01-12
* gnu: r-broom: Update to 0.5.1.•••* gnu/packages/cran.scm (r-broom): Update to 0.5.1. [propagated-inputs]: Add r-generics. Ricardo Wurmus2019-01-12
* gnu: Add r-generics.•••* gnu/packages/cran.scm (r-generics): New variable. Ricardo Wurmus2019-01-12
* gnu: r-curl: Update to 3.3.•••* gnu/packages/cran.scm (r-curl): Update to 3.3. [inputs]: Add zlib. [native-inputs]: Add pkg-config. Ricardo Wurmus2019-01-12
* gnu: r-readr: Update to 1.3.1.•••* gnu/packages/statistics.scm (r-readr): Update to 1.3.1. [propagated-inputs]: Add r-clipr and r-crayon. Ricardo Wurmus2019-01-12
* gnu: r-mvabund: Update to 4.0.1.•••* gnu/packages/cran.scm (r-mvabund): Update to 4.0.1. Ricardo Wurmus2019-01-12
* gnu: r-writexl: Update to 1.1.•••* gnu/packages/cran.scm (r-writexl): Update to 1.1. Ricardo Wurmus2019-01-12
* gnu: r-jsonlite: Update to 1.6.•••* gnu/packages/cran.scm (r-jsonlite): Update to 1.6. Ricardo Wurmus2019-01-12
* gnu: python-pillow: Update homepage.•••* gnu/packages/python.scm (python-pillow)[homepage]: Update URL. Kei Kebreau2019-01-12
* gnu: python-pillow: Update to 5.4.0•••* gnu/packages/python.scm (python-pillow): Update to 5.4.0. [arguments]: Add 'patch-ldconfig' phase. Kei Kebreau2019-01-12
* gnu: Sort package modules in (gnu packages guile).•••* gnu/packages/guile.scm: Sort list of gnu/packages modules. Ricardo Wurmus2019-01-12
* gnu: impressive: Update to 0.12.0.•••* gnu/packages/pdf.scm (impressive): Update to 0.12.0. Ricardo Wurmus2019-01-12
* gnu: Move Java compression packages to new module.•••* gnu/packages/compression.scm (bitshuffle-for-snappy): Export variable. (java-snappy, java-snappy-1, java-iq80-snappy, java-jbzip2, java-tukaani-xz): Move these variables from here... * gnu/packages/java-compression.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/java.scm, gnu/packages/bioinformatics.scm: Adjust module references. Ricardo Wurmus2019-01-12
* gnu: Add Bochs.•••* gnu/packages/virtualization.scm (bochs): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> guy fleury iteriteka2019-01-11
* gnu: Stellarium: Update to 0.18.3.•••* gnu/packages/astronomy.scm (stellarium): Update to 0.18.3. [arguments]: Skip a broken test. Leo Famulari2019-01-11
* gnu: opendht: Make argon2 a propagated input so that its .pc is found.•••* gnu/packages/networking.scm (opendht)[inputs]: Remove argon2. [propagated-inputs]: Add it here. Pierre Neidhardt2019-01-11
* gnu: opendht: Use jsoncpp and restbed.•••* gnu/packages/crypto.scm (opendht): Move definition to networking.scm. * gnu/packages/networking.scm (opendht)[inputs]: Add jsoncpp and restbed. Pierre Neidhardt2019-01-11
* gnu: Add restbed.•••* gnu/packages/networking.scm (restbed): New variable. Pierre Neidhardt2019-01-11
* gnu: libupnp: Update to 1.6.25.•••* gnu/packages/upnp.scm (libupnp): Update to 1.6.25. Pierre Neidhardt2019-01-11
* gnu: kinit: Use KDEINIT5_LIBRARY_PATH to search for dynlibs.•••Using LIBRARY_PATH was introduced in 16b8aff85bcdb9799496c4a27257210cd45158e5, but is wrong since this variable is used by the compiler (gcc) at link time. * gnu/packages/patches/kinit-kdeinit-libpath.patch: Change LIBRARY_PATH to KDEINIT5_LIBRARY_PATH. * gnu/packages/kde-frameworks.scm (kinit)[native-search-paths]: New field. Hartmut Goebel2019-01-11
* Revert "gnu: emacs-ghub: Update to 3.2.0."•••This change should be applied once we update our magit package. This reverts commit b96f0e6ff9f8f36d250b5ae94a908272babb35cf. Jelle Licht2019-01-11
* gnu: Add emacs-general.•••[[PGP Signed Part:Good signature from 31BC8105F659D425 Gabriel Hondet <gabrielhondet@gmail.com> (trust undefined) created at 2019-01-06T10:42:43+0100 using RSA]] * gnu/packages/emacs.scm (emacs-general): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Gabriel Hondet2019-01-11
* services: Deprecate a few more service procedures.•••These procedures were already either undocumented (and de facto deprecated) or documented as deprecated or redundant. * gnu/services/base.scm (guix-service, guix-publish-service): Mark as deprecated. * gnu/services/mcron.scm (mcron-service): Likewise. * gnu/services/networking.scm (tor-service): Likewise. * doc/guix.texi (Scheduled Job Execution): Remove 'mcron-service' and adjust example. (Networking Services): Remove 'tor-service'. * gnu/tests/base.scm (%mcron-os): Use 'mcron-service-type' instead of 'mcron-service'. * gnu/tests/networking.scm (%tor-os): Use 'tor-service-type' instead of 'tor-service'. * tests/guix-system.sh: Likewise. Ludovic Courtès2019-01-11
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