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* gnu: awscli: Add missing input.Ricardo Wurmus2019-05-29
| | | | | | | | Fixes <https://bugs.gnu.org/35980>. * gnu/packages/python-web.scm (awscli)[arguments]: Add build phase "fix-reference-to-groff". [inputs]: Add groff.
* gnu: r-scran: Update to 1.12.1.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.1.
* gnu: r-scater: Update to 1.12.2.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.2.
* gnu: r-sva: Update to 3.32.1.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.1.
* gnu: r-genomicfeatures: Update to 1.36.1.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.1.
* gnu: r-edger: Update to 3.26.4.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.4.
* gnu: r-variantannotation: Update to 1.30.1.Ricardo Wurmus2019-05-29
| | | | * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.1.
* gnu: r-atacseqqc: Update to 1.8.1.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.1.
* gnu: r-icobra: Update to 1.12.1.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.1.
* gnu: r-chippeakanno: Update to 3.18.1.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.1.
* gnu: r-geosphere: Update to 1.5-10.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-geosphere): Update to 1.5-10.
* gnu: r-ggfortify: Update to 0.4.7.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-ggfortify): Update to 0.4.7.
* gnu: r-wgcna: Update to 1.68.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-wgcna): Update to 1.68.
* gnu: r-bookdown: Update to 0.11.Ricardo Wurmus2019-05-28
| | | | | * gnu/packages/cran.scm (r-bookdown): Update to 0.11. [propagated-inputs]: Add ghc-pandoc; remove r-yaml.
* gnu: r-upsetr: Update to 1.4.0.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-upsetr): Update to 1.4.0.
* gnu: r-epi: Update to 2.37.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-epi): Update to 2.37.
* gnu: r-etm: Update to 1.0.5.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-etm): Update to 1.0.5.
* gnu: r-cmprsk: Update to 2.2-8.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-cmprsk): Update to 2.2-8.
* gnu: r-ks: Update to 1.11.5.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-ks): Update to 1.11.5.
* gnu: r-bayesplot: Update to 1.7.0.Ricardo Wurmus2019-05-28
| | | | | * gnu/packages/cran.scm (r-bayesplot): Update to 1.7.0. [propagated-inputs]: Add r-glue, r-tibble, and r-tidyselect.
* gnu: r-refgenome: Update to 1.7.7.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-refgenome): Update to 1.7.7.
* gnu: r-snakecase: Update to 0.11.0.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-snakecase): Update to 0.11.0.
* gnu: r-openxlsx: Update to 4.1.0.1.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.1.
* gnu: r-pillar: Update to 1.4.1.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-pillar): Update to 1.4.1.
* gnu: r-tsp: Update to 1.1-7.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-tsp): Update to 1.1-7.
* gnu: r-jomo: Update to 2.6-8.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-jomo): Update to 2.6-8.
* gnu: r-ksamples: Update to 1.2-9.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-ksamples): Update to 1.2-9.
* gnu: r-lpsolve: Update to 5.6.13.1.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/cran.scm (r-lpsolve): Update to 5.6.13.1.
* gnu: r-car: Update to 3.0-3.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/statistics.scm (r-car): Update to 3.0-3.
* gnu: r-fpc: Update to 2.2-1.Ricardo Wurmus2019-05-28
| | | | | * gnu/packages/statistics.scm (r-fpc): Update to 2.2-1. [propagated-inputs]: Remove r-trimcluster.
* gnu: r-prabclus: Update to 2.2-7.1.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.1.
* gnu: r-zoo: Update to 1.8-6.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/statistics.scm (r-zoo): Update to 1.8-6.
* gnu: r-rmarkdown: Update to 1.13.Ricardo Wurmus2019-05-28
| | | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 1.13. [propagated-inputs]: Add r-xfun.
* gnu: r-evaluate: Update to 0.14.Ricardo Wurmus2019-05-28
| | | | * gnu/packages/statistics.scm (r-evaluate): Update to 0.14.
* gnu: python-attrs: Update to 19.1.0.h.nasajpour2019-05-28
| | | | | | * gnu/packages/python-xyz.scm (python-attrs): Update to 19.1.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: python-flask: Update to 1.0.3.h.nasajpour2019-05-28
| | | | | | * gnu/packages/python-web.scm (python-flask): Update to 1.0.3. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: d-feet: Fix missing input and update to 0.3.14.Pierre Neidhardt2019-05-28
| | | | | * gnu/packages/gnome.scm (d-feet): Update to 0.3.14. [inputs]: Add hicolor-icon-theme since d-feet won't list anything without it.
* gnu: guix: Update to 35d1354.Ludovic Courtès2019-05-28
| | | | * gnu/packages/package-management.scm (guix): Update to 35d1354.
* gnu: emacs-relint: Update to 1.8.Nicolas Goaziou2019-05-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.8.
* gnu: emacs-xr: Update to 1.12.Nicolas Goaziou2019-05-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.12.
* gnu: guix: Add dependency on lzlib.Ludovic Courtès2019-05-27
| | | | * gnu/packages/package-management.scm (guix)[inputs]: Add LZLIB.
* gnu: r-shiny: Fix JavaScript minification.Ricardo Wurmus2019-05-27
| | | | | | Fixes <https://bugs.gnu.org/35923>. * gnu/packages/cran.scm (r-shiny)[native-inputs]: Add uglify-js.
* gnu: Add osmctoolsGuillaume LE VAILLANT2019-05-27
| | | | | | * gnu/packages/geo.scm (osmctools): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: go@1.4: Update to 1.4-bootstrap-20171003.Alex Griffin2019-05-27
| | | | | | | | | | | | * gnu/packages/golang.scm (go-1.4): Use the bootstrap branch that is still supported upstream. [version]: Update to 1.4-bootstrap-20171003. [arguments]: Remove obsolete fix for timezone test which is now included upstream. Don't manually disable cgo because it is disabled by default. Manually enable test suite because future releases will disable tests by default. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-alembic: Update to 1.0.10.Danny Milosavljevic2019-05-27
| | | | * gnu/packages/databases.scm (python-alembic): Update to 1.0.10.
* gnu: tlp: Add required x86-energy-perf-policy input dependency.Stefan Stefanović2019-05-27
| | | | | | | | | | | | * gnu/packages/linux.scm (tlp) [inputs]: Add system specific x86-energy-perf-policy dependency. [arguments]<#:phases>['wrap]: Adjust bin-directory procedure to return #f on missing input, a guard against system specific input dependencies. Filter only strings in the path list. Reformat for-each block. Add x86-energy-perf-policy in bin-directory input-name list. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add x86-energy-perf-policy.Stefan Stefanović2019-05-27
| | | | | | * gnu/packages/linux.scm (x86-energy-perf-policy): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: MATE: Use mirror://mate/ in source URIs.guy fleury iteriteka2019-05-27
| | | | | | | * gnu/packages/mate.scm(MATE packages)[source](uri): Use "mirror://mate/" instead of "https://pub.mate-desktop.org/releases/" directly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: you-get: Update to 0.4.1302.Alex Vong2019-05-27
| | | | * gnu/packages/video.scm (you-get): Update to 0.4.1302.
* gnu: linux-libre: Update to 5.1.5.Mark H Weaver2019-05-26
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.5. (%linux-libre-hash): Update hash.
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