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* gnu: maxima: Fix tests on i686 and x86_64.Kei Kebreau2018-11-18
| | | | * gnu/packages/maths.scm (maxima)[arguments]: Replace check phase.
* gnu: ccl: Include x86-headers and remove missing "contrib" folder.Pierre Neidhardt2018-11-18
| | | | * gnu/packages/lisp.scm (ccl): Include x86-headers and remove missing "contrib" folder.
* gnu: mesa: Stay on RTTI-less LLVM.Marius Bakke2018-11-17
| | | | | * gnu/packages/llvm.scm (llvm-without-rtti): New public variable. * gnu/packages/gl.scm (mesa)[inputs]: Use that instead of LLVM.
* gnu: Add ClamAV.Eric Bavier2018-11-17
| | | | | | | | | | * gnu/packages/antivirus.scm: New file. * gnu/packages/patches/clamav-system-tomsfastmath.patch, gnu/packages/patches/clamav-config-llvm-libs.patch: New files. * gnu/local.mk (GNU_SYSTEM_MODULES): Add new module. (dist_patch_DATA): Add patches. Co-authored-by: Christopher Baines <mail@cbaines.net>
* gnu: Add TomsFastMath.Eric Bavier2018-11-17
| | | | | | * gnu/packages/multiprecision.scm (tomsfastmath): New variable. * gnu/packages/patches/tomsfastmath-constness.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it.
* llvm: Build with RTTI by default.Eric Bavier2018-11-17
| | | | | | | | | | | Increases size of llvm@6 by 2.5MiB (2.5%), but saves building specialized llvm's with rtti enabled for packages that require RTTI when linking with the llvm libraries. * gnu/packages/llvm.scm (llvm-3.8-with-rtti): Remove variable. (llvm)[arguments]: Add '-DLLVM_REQUIRES_RTTI=1' to #:configure-flags. * gnu/packages/audio.scm (faust-2)[native-inputs]: 'llvm-3.8-with-rtti' -> 'llvm-3.8'.
* gnu: u-boot: Update to 2018.11.Vagrant Cascadian2018-11-17
| | | | | * gnu/packages/bootloaders.scm (u-boot): Update to 2018.11. (u-boot)[native-inputs]: Add lz4.
* gnu: Add git-when-merged.Kyle Meyer2018-11-16
| | | | | | * gnu/packages/version-control.scm (git-when-merged): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add caps-plugins-lv2.Thorsten Wilms2018-11-16
| | | | | | * gnu/packages/audio.scm (caps-plugins-lv2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: tiled: Update to 1.2.1.David Thompson2018-11-16
| | | | * gnu/packages/game-development.scm (tiled): Update to 1.2.1.
* guile: newt: Update revision to 2.Mathieu Othacehe2018-11-16
| | | | * gnu/packages/guile.scm (guile-newt): Update revision to 2.
* gnu: Add cmh.Andreas Enge2018-11-16
| | | | * gnu/packages/algebra.scm (cmh): New variable.
* gnu: gp2c: Update to 0.0.11pl1.Andreas Enge2018-11-16
| | | | * gnu/packages/algebra.scm (gp2c): Update to 0.0.11pl1.
* gnu: emacs-realgud: Patch configure.ac to repair the build.Maxim Cournoyer2018-11-15
| | | | | | | | | This fixes https://bugs.gnu.org/33196, a build problem caused by a defective Elisp snippet in a check in configure.ac. * gnu/packages/patches/emacs-realgud-fix-configure-ac.patch: Add patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/emacs.scm (emacs-realgud)[source]: Use it.
* gnu: Add nanopolish.pimi2018-11-15
| | | | | | * gnu/packages/bioinformatics.scm (nanopolish): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: sambamba: Update to 0.6.8.Roel Janssen2018-11-15
| | | | * gnu/packages/bioinformatics.scm (sambamba): Update to 0.6.8.
* gnu: linux-libre: Update to 4.19.2.Mark H Weaver2018-11-14
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.19.2. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.81.Mark H Weaver2018-11-14
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.81. (%linux-libre-4.14-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.137.Mark H Weaver2018-11-14
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.137.
* gnu: Add fenics.Paul Garlick2018-11-14
| | | | | | * gnu/packages/simulation.scm (fenics): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add fenics-dolfin.Paul Garlick2018-11-14
| | | | | | * gnu/packages/simulation.scm (fenics-dolfin): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-fenics-ffc.Paul Garlick2018-11-14
| | | | | | * gnu/packages/simulation.scm (python-fenics-ffc): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-fenics-fiat.Paul Garlick2018-11-14
| | | | | | * gnu/packages/simulation.scm (python-fenics-fiat): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-fenics-ufl.Paul Garlick2018-11-14
| | | | | | * gnu/packages/simulation.scm (python-fenics-ufl): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-fenics-dijitso.Paul Garlick2018-11-14
| | | | | | * gnu/packages/simulation.scm (python-fenics-dijitso): New varaible. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-slepc4py.Paul Garlick2018-11-14
| | | | | | * gnu/packages/maths.scm (python-slepc4py): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-petsc4py.Paul Garlick2018-11-14
| | | | | | * gnu/packages/maths.scm (python-petsc4py): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-mpi4py.Paul Garlick2018-11-14
| | | | | | * gnu/packages/mpi.scm (python-mpi4py): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: guix-daemon: Install 'guix-authenticate'.Ludovic Courtès2018-11-14
| | | | | | | | | Fixes <https://bugs.gnu.org/33368>. Reported by Konrad Hinsen <konrad.hinsen@fastmail.net>. * gnu/packages/package-management.scm (guix-daemon)[arguments]: In 'install' phase, build "install-nodist_libexecSCRIPTS" target to install 'guix-authenticate'.
* gnu: xf86-video-r128: Update to 6.12.0.Marius Bakke2018-11-14
| | | | * gnu/packages/xorg.scm (xf86-video-r128): Update to 6.12.0.
* gnu: mtools: Update to 4.0.20.Marius Bakke2018-11-14
| | | | | * gnu/packages/mtools.scm (mtools): Update to 4.0.20. [source](uri): Change to 'bz2' compressed tarball.
* gnu: nano: Update to 3.2.Marius Bakke2018-11-14
| | | | * gnu/packages/nano.scm (nano): Update to 3.2.
* gnu: sudo: Update to 1.8.26.Marius Bakke2018-11-14
| | | | * gnu/packages/admin.scm (sudo): Update to 1.8.26.
* gnu: feh: Update to 3.0.Marius Bakke2018-11-14
| | | | * gnu/packages/image-viewers.scm (feh): Update to 3.0.
* gnu: Add jamm.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/bioinformatics.scm (jamm): New variable.
* gnu: Add r-ouch.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/cran.scm (r-ouch): New variable.
* gnu: Add r-activity.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/cran.scm (r-activity): New variable.
* gnu: Add r-circular.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/cran.scm (r-circular): New variable.
* gnu: Add r-overlap.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/cran.scm (r-overlap): New variable.
* gnu: Add r-acdm.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/cran.scm (r-acdm): New variable.
* gnu: Add r-acd.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/cran.scm (r-acd): New variable.
* gnu: Add r-abn.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/cran.scm (r-abn): New variable.
* gnu: Add r-rjags.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/cran.scm (r-rjags): New variable.
* gnu: Add jags.Ricardo Wurmus2018-11-14
| | | | * gnu/packages/statistics.scm (jags): New variable.
* gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.4.4.Ricardo Wurmus2018-11-13
| | | | | * gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.4.4.
* gnu: r-org-mm-eg-db: Update to 3.7.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-org-mm-eg-db): Update to 3.7.0.
* gnu: r-org-dm-eg-db: Update to 3.7.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-org-dm-eg-db): Update to 3.7.0.
* gnu: r-org-ce-eg-db: Update to 3.7.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Update to 3.7.0.
* gnu: r-org-hs-eg-db: Update to 3.7.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Update to 3.7.0.
* gnu: r-genomationdata: Update to 1.14.0.Ricardo Wurmus2018-11-13
| | | | * gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.14.0.
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