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* gnu: Add cubicle.Julien Lepiller2017-08-05
| | | | * gnu/packages/maths.scm (cubicle): New variable.
* gnu: php: Update to 7.1.8.Julien Lepiller2017-08-04
| | | | | | * gnu/packages/patches/gd-CVE-2017-7890.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it * gnu/packages/php.scm (php): Update to 7.1.8.
* gnu: Add r-crosstalk.Ricardo Wurmus2017-08-04
| | | | * gnu/packages/web.scm (r-crosstalk): New variable.
* gnu: Add r-shiny.Ricardo Wurmus2017-08-04
| | | | * gnu/packages/web.scm (r-shiny): New variable.
* gnu: Add js-es5-shim.Ricardo Wurmus2017-08-04
| | | | * gnu/packages/javascript.scm (js-es5-shim): New variable.
* gnu: Add js-selectize.Ricardo Wurmus2017-08-04
| | | | * gnu/packages/javascript.scm (js-selectize): New variable.
* gnu: Add js-datatables.Ricardo Wurmus2017-08-04
| | | | * gnu/packages/javascript.scm (js-datatables): New variable.
* gnu: Add js-highlight.Ricardo Wurmus2017-08-04
| | | | * gnu/packages/javascript.scm (js-highlight): New variable.
* gnu: Add js-strftime.Ricardo Wurmus2017-08-04
| | | | * gnu/packages/javascript.scm (js-strftime): New variable.
* gnu: Add js-json2.Ricardo Wurmus2017-08-04
| | | | * gnu/packages/javascript.scm (js-json2): New variable.
* gnu: Add js-html5shiv.Ricardo Wurmus2017-08-04
| | | | * gnu/packages/javascript.scm (js-html5shiv): New variable.
* gnu: python-lz4: Fix typo in synopsis.Tobias Geerinckx-Rice2017-08-04
| | | | * gnu/packages/compression.scm (python-lz4)[synopsis]: Fix typo.
* gnu: python-lz4: Update to 0.10.1.Tobias Geerinckx-Rice2017-08-04
| | | | | * gnu/packages/compression.scm (python-lz4): Update to 0.10.1. [native-inputs]: Add python-setuptools-scm.
* gnu: diffoscope: Use HTTPS.Tobias Geerinckx-Rice2017-08-04
| | | | * gnu/packages/package-management.scm (diffoscope)[home-page]: Use HTTPS.
* gnu: sshoot: Update to 1.2.6.Tobias Geerinckx-Rice2017-08-04
| | | | | * gnu/packages/vpn.scm (sshoot): Update to 1.2.6. [home-page]: Update to new project home.
* gnu: fabric: Update to 1.13.2.Tobias Geerinckx-Rice2017-08-04
| | | | | | | * gnu/packages/admin.scm (fabric): Update to 1.13.2. Remove outdated comments. [source]: Remove ‘patches’. * gnu/packages/patches/fabric-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: certbot, python-acme: Update to 0.17.0.Tobias Geerinckx-Rice2017-08-04
| | | | * gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.17.0.
* gnu: xonsh: Update to 0.5.12.Tobias Geerinckx-Rice2017-08-04
| | | | * gnu/packages/shells.scm (xonsh): Update to 0.5.12.
* gnu: cmark: Update to 0.28.0.Tobias Geerinckx-Rice2017-08-04
| | | | * gnu/packages/markup.scm (cmark): Update to 0.28.0.
* gnu: thefuck: Update to 3.19.Tobias Geerinckx-Rice2017-08-04
| | | | * gnu/packages/admin.scm (thefuck): Update to 3.19.
* gnu: zerofree: Update to 1.1.0.Tobias Geerinckx-Rice2017-08-04
| | | | | * gnu/packages/linux.scm (zerofree): Update to 1.1.0. [home-page, source]: Update from old, inaccessible location.
* gnu: zerofree: Expand description.Tobias Geerinckx-Rice2017-08-04
| | | | * gnu/packages/linux.scm (zerofree)[description]: Expand.
* gnu: zerofree: Use ‘install-file’.Tobias Geerinckx-Rice2017-08-04
| | | | | * gnu/packages/linux.scm (zerofree)[arguments]: Simplify install phase, using ‘install-file’.
* gnu: zerofree: Use ‘modify-phases’ syntax.Tobias Geerinckx-Rice2017-08-04
| | | | * gnu/packages/linux.scm (zerofree)[arguments]: Use ‘modify-phases’.
* gnu: sshfs-fuse: Update to 2.10.Tobias Geerinckx-Rice2017-08-04
| | | | * gnu/packages/linux.scm (sshfs-fuse): Update to 2.10.
* gnu: freerdp: Update to 2.0.0-rc0 [security fixes].Marius Bakke2017-08-04
| | | | | | | | | | Fixes CVE-2017-{2834,2835,2836,2837,2838,2839}. Reported by Leo Famulari in <https://bugs.gnu.org/27939>. * gnu/packages/rdesktop.scm (freerdp): Update to 2.0.0-rc0. [source]: Use tarball release. Adjust file-name. [arguments]: Remove #:phases.
* gnu: git: Enable tests.Marius Bakke2017-08-04
| | | | | * gnu/packages/version-control.scm (git)[arguments]: Remove #:tests?. Add 'patch-tests' phase.
* gnu: gnupg@1.4: Update to 1.4.22 [fixes CVE-2017-7526].Leo Famulari2017-08-03
| | | | * gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.22.
* gnu: Add missing references to (gnu packages cran).Ricardo Wurmus2017-08-03
| | | | | | This is a follow-up to commit a8cba9dd112528d67a946eee057c838221eb5249. Reported-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: bioinformatics.scm: Use (gnu packages cran) module.Efraim Flashner2017-08-03
| | | | | | This is a follow up to a8cba9dd112528d67a946eee057c838221eb5249. * gnu/packages/bioinformatics.scm: Add (gnu packages cran) to #:use-modules.
* gnu: r-purrr: Update to 0.2.3.Ricardo Wurmus2017-08-03
| | | | | * gnu/packages/statistics.scm (r-purrr): Update to 0.2.3. [propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
* gnu: r-desc: Update to 1.1.1.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
* gnu: r-seqminer: Update to 6.0.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.0.
* gnu: r-wgcna: Update to 1.60.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.60.
* gnu: r-qtl: Update to 1.41-6.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/bioinformatics.scm (r-qtl): Update to 1.41-6.
* gnu: r-seqinr: Update to 3.4-5.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.4-5.
* gnu: r-optparse: Update to 1.4.4.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/bioinformatics.scm (r-optparse): Update to 1.4.4.
* gnu: r-bookdown: Update to 0.4.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.4.
* gnu: r-tclust: Update to 1.2-7.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-tclust): Update to 1.2-7.
* gnu: r-car: Update to 2.1-5.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-car): Update to 2.1-5.
* gnu: r-rcppeigen: Update to 0.3.3.3.0.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.0.
* gnu: r-pbapply: Update to 1.3-3.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-pbapply): Update to 1.3-3.
* gnu: r-vgam: Update to 1.0-4.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-vgam): Update to 1.0-4.
* gnu: r-mclust: Update to 5.3.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-mclust): Update to 5.3.
* gnu: r-flexmix: Update to 2.3-14.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-flexmix): Update to 2.3-14.
* gnu: r-fastica: Update to 1.2-1.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-fastica): Update to 1.2-1.
* gnu: r-cowplot: Update to 0.8.0.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-cowplot): Update to 0.8.0.
* gnu: r-rann: Update to 2.5.1.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-rann): Update to 2.5.1.
* gnu: r-statmod: Update to 1.4.30.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-statmod): Update to 1.4.30.
* gnu: r-gdata: Update to 2.18.0.Ricardo Wurmus2017-08-03
| | | | * gnu/packages/statistics.scm (r-gdata): Update to 2.18.0.
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