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* gnu: Add r-h5.Ricardo Wurmus2018-11-09
| | | | * gnu/packages/cran.scm (r-h5): New variable.
* gnu: Add r-aggregation.Ricardo Wurmus2018-11-09
| | | | * gnu/packages/cran.scm (r-aggregation): New variable.
* gnu: Add r-savr.Ricardo Wurmus2018-11-09
| | | | * gnu/packages/bioconductor.scm (r-savr): New variable.
* gnu: r-with-tests: Update to 3.5.1.Ricardo Wurmus2018-11-09
| | | | * gnu/packages/statistics.scm (r-with-tests): Update to 3.5.1.
* gnu: r-with-tests: Use INVOKE.Ricardo Wurmus2018-11-09
| | | | | * gnu/packages/statistics.scm (r-with-tests)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: Add emacs-gtk-look.Pierre Neidhardt2018-11-09
| | | | * gnu/packages/emacs.scm (emacs-gtk-look): New variable.
* gnu: Add xmlrpc-c.Pierre Neidhardt2018-11-09
| | | | * gnu/packages/xml.scm (xmlrpc-c): New variable.
* gnu: guile-newt: Update to revision 1.Mathieu Othacehe2018-11-09
| | | | * gnu/packages/guile.scm (guile-newt): Update to revision 1.
* gnu: powertabeditor: Fetch sources from git.Ricardo Wurmus2018-11-09
| | | | * gnu/packages/music.scm (powertabeditor)[source]: Fetch from git.
* gnu: powertabeditor: Use INVOKE.Ricardo Wurmus2018-11-09
| | | | | * gnu/packages/music.scm (powertabeditor)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: wxmaxima: Update to 18.10.1.Kei Kebreau2018-11-09
| | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 18.10.1. [source]: Update URL and remove patch. * gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch.
* gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850].Leo Famulari2018-11-08
| | | | * gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11.
* gnu: Add emacs-clang-format.Pierre Neidhardt2018-11-08
| | | | * gnu/packages/emacs.scm (emacs-clang-format): New variable.
* gnu: kodi: Update to 18.0b5.Efraim Flashner2018-11-08
| | | | | | | | | * gnu/packages/kodi.scm (kodi): Update to 18.0b5. [source]: Update snippet. [inputs]: Add flatbuffers, fstrcmp. (crossguid): Update to commit fef89a4174a7bf8cd99fa9154864ce9e8e3bf989. (libdvdnav/kodi, libdvdread/kodi): Update to 6.0.0-Leia-Alpha-3. (libdvdcss/kodi): Update to 1.4.2-Leia-Beta-5.
* gnu: Add fstrcmp.Efraim Flashner2018-11-08
| | | | * gnu/packages/kodi.scm (fstrcmp): New variable.
* gnu: python-ilinkedlist: Update to 0.3.1.Luther Thompson2018-11-08
| | | | | | * gnu/packages/python.scm (python-ilinkedlist): Update to 0.3.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-pyelftools.Vagrant Cascadian2018-11-08
| | | | | | | * gnu/packages/python.scm (python-pyelftools): New public variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: libmusicbrainz: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/music.scm (libmusicbrainz)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: pd: Remove custom autoconf phase.Ricardo Wurmus2018-11-08
| | | | * gnu/packages/music.scm (pd)[arguments]: Remove custom autoconf phase.
* gnu: cmus: Fetch sources from git.Ricardo Wurmus2018-11-08
| | | | * gnu/packages/music.scm (cmus)[source]: Fetch from git.
* gnu: cmus: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/music.scm (cmus)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: pcc: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/c.scm (pcc)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: pplacer-scripts: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (pplacer-scripts)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: roary: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (roary)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: seek: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (seek)[arguments]: Use INVOKE and return #T unconditionally; patch "gen_tools_am" shebang in "bootstrap" phase.
* gnu: sailfish: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use INVOKE instead of SYSTEM*.
* gnu: vsearch: Update to 2.9.1.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (vsearch): Update to 2.9.1. * gnu/packages/patches/vsearch-unbundle-cityhash.patch: Update.
* gnu: sra-tools: Update to 2.9.3.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.3. [arguments]: Remove build phase patch-away-glibc-conflict.
* gnu: plink-ng: Fetch sources from git.Ricardo Wurmus2018-11-08
| | | | * gnu/packages/bioinformatics.scm (plink-ng)[source]: Fetch from git.
* gnu: ncbi-vdb: Update to 2.9.3.Ricardo Wurmus2018-11-08
| | | | * gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.3.
* gnu: ngs-sdk: Update to 2.9.3.Ricardo Wurmus2018-11-08
| | | | * gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.3.
* gnu: ngs-sdk: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: emboss: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (emboss)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: taxtastic: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (taxtastic)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: sra-tools: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: muscle: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (muscle)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: newick-utils: Remove custom autoconf phase.Ricardo Wurmus2018-11-08
| | | | * gnu/packages/bioinformatics.scm (newick-utils)[arguments]: Remove.
* gnu: mash: Remove custom autoconf phase.Ricardo Wurmus2018-11-08
| | | | * gnu/packages/bioinformatics.scm (mash)[arguments]: Remove autoconf phase.
* gnu: vsearch: Remove custom autogen phase.Ricardo Wurmus2018-11-08
| | | | * gnu/packages/bioinformatics.scm (vsearch)[arguments]: Remove.
* gnu: java-picard-1.113: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (java-picard-1.113)[arguments]: Use INVOKE and return #T unconditionally.
* gnu: fraggenescan: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (fraggenescan)[arguments]: Use INVOKE in build phases and return #T unconditionally.
* gnu: sailfish: Fetch sources from git.Ricardo Wurmus2018-11-08
| | | | * gnu/packages/bioinformatics.scm (sailfish)[source]: Fetch from git.
* gnu: ngs-sdk: Fetch sources from git.Ricardo Wurmus2018-11-08
| | | | * gnu/packages/bioinformatics.scm (ngs-sdk)[source]: Fetch from git.
* gnu: ncbi-vdb: Use INVOKE and end phases on #T.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Use INVOKE and unconditionally end phases with #T.
* gnu: ncbi-vdb: Fetch sources from git.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (ncbi-vdb)[source]: Fetch from git. [arguments]: Add phase to make checkout writable.
* gnu: tadbit: Fetch sources from git.Ricardo Wurmus2018-11-08
| | | | | * gnu/packages/bioinformatics.scm (tadbit)[source]: Fetch from git. [version]: Use "2.0.0" instead of "2.0".
* gnu: pspp: Update to 1.2.0.Kei Kebreau2018-11-07
| | | | | | * gnu/packages/statistics.scm (pspp): Update to 1.2.0. [inputs]: Add spread-sheet-widget. [native-inputs]: Add autoconf, python-2, and texinfo.
* gnu: Add spread-sheet-widget.Kei Kebreau2018-11-07
| | | | * gnu/packages/gtk.scm (spread-sheet-widget): New public variable.
* gnu: filevercmp: Fetch sources from git.Ricardo Wurmus2018-11-07
| | | | | * gnu/packages/bioinformatics.scm (filevercmp)[source]: Fetch from git. [arguments]: Add #T to the end of the install phase.
* gnu: ritornello: Update to 2.0.1.Ricardo Wurmus2018-11-07
| | | | | * gnu/packages/bioinformatics.scm (ritornello): Update to 2.0.1. [arguments]: Adjust file patching.
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