| Commit message (Collapse) | Author | Age |
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* gnu/packages/mail.scm (mailutils): Update to 3.9.
[arguments]: In 'prepare-test-suite' phase, adjust name of the mda
'testsuite' files.
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* gnu/packages/guile.scm (guile-3.0): Update to 3.0.2.
* gnu/packages/patches/guile-3.0-crash.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/lisp-xyz.scm (cl-trivial-package-local-nicknames,
sbcl-trivial-package-local-nicknames): New variables.
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* gnu/packages/rust.scm (rust-1.39): New variable.
(%cargo-reference-hash): Add a comment explaining the role of the
variable.
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All packages are still built with rustc 1.37, but users will see rustc
1.38 in their profiles, and packages that require newer compiler
versions will be possible to add.
* gnu/packages/rust.scm (rust-1.31): Factor out the
patch-command-exec-tests phase to a separate procedure.
(patch-command-exec-tests-phase): New procedure.
(rust): Rename to rust-1.37, make rust an alias.
(rust-1.38): New variable.
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* gnu/packages/plotutils.scm (asymptote): Update to 2.65.
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* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
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* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.4.
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* gnu/packages/statistics.scm (r-class): Update to 7.3-16.
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* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.2.
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* gnu/packages/cran.scm (r-rjava): Update to 0.9-12.
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* gnu/packages/cran.scm (r-sf): Update to 0.9-0.
[native-inputs]: Add r-knitr.
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* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.3.
[native-inputs]: Add r-knitr.
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* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.2.
[native-inputs]: Add r-knitr.
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* gnu/packages/cran.scm (r-ggally): Update to 1.5.0.
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These changes support the guix-data-service-backup-database and
guix-data-service-create-small-backup scripts. These are shell scripts, so
require coreutils from the build environment at runtime as well as binaries
from postgresql, ephemeralpg and optionally util-linux (for ionice and
renice).
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-19.d1c243f.
[arguments]: Add (ice-9 ftw) and (ice-9 match) to #:modules, change the
'install phase to wrap all bin files with some inputs as well.
[inputs]: Add util-linux, include ephemeralpg from native-inputs and switch
postgresql for postgresql-11.
[native-inputs]: Move ephemeralpg to inputs.
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* gnu/packages/python-xyz.scm (python-json5): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-xyz.scm (python-pytest-check-links): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/cybersecurity.scm: New file.
(ropgadget): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register the file.
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This fixes CVE-2020-1938 ("Ghostcat").
* gnu/packages/web.scm (java-tomcat): Update to 8.5.53.
[properties]: Add cpe-name.
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This is to prevent a build failure when this gets merged to 'core-updates'
which does not have any patch-flags to inherit.
* gnu/packages/icu4c.scm (icu4c/fixed)[source](patch-flags): New field.
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* gnu/packages/man.scm (help2man/latest): Update to 1.47.13.
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* gnu/packages/python-xyz.scm (python-pywinrm): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/python-web.scm (python-requests_ntlm): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/python-crypto.scm (python-ntlm-auth): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/python-crypto.scm (python-kerberos): New variable.
Signed-off-by: Christopher Baines <mail@cbaines.net>
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* gnu/packages/bioinformatics.scm (sambamba): Update to 0.7.1;
Remove unneeded undead input.
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* gnu/packages/games.scm (7kaa): New variable.
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* gnu/packages/distributed.scm (boinc-client): Update to 7.16.5.
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* gnu/packages/distributed.scm (boinc-server)[inputs]: Replace openssl
with openssl-1.0, mariadb with mariadb:dev.
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Fixes <https://bugs.gnu.org/24076>.
Reported by Danny Milosavljevic <dannym@scratchpost.org>.
* gnu/packages/patches/gnupg-default-pinentry.patch: New file.
* gnu/packages/gnupg.scm (gnupg)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/video.scm (youtube-viewer)[arguments]: Update
module-build-flags to only build gtk2 front-end.
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* gnu/packages/video.scm (youtube-viewer): Update to 3.7.5.
[inputs]: Add perl-json-xs.
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* gnu/packages/emacs-xyz.scm (emacs-helm-exwm): Update to 0.0.2.
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* gnu/packages/cran.scm (r-argon2)[synopsis]: Use lower case.
[description]: Use full sentence.
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* gnu/packages/cran.scm (r-getpass): Adjust indentation.
[synopsis]: Do not capitalize all words.
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* gnu/packages/cran.scm (r-remoter): Fix indentation.
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* gnu/packages/cran.scm (r-remoter)[synopsis]: Do not capitalize all words.
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* gnu/packages/patches/linux-libre-support-for-Pinebook-Pro.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Update accordingly.
* gnu/packages/linux (linux-libre-5.4-source): Add patch.
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* gnu/packages/linux.scm (deblob-scripts-5.4): Update to 5.4.28.
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* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.28.
(linux-libre-5.4-pristine-source): Update hash.
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* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.113.
(linux-libre-4.19-pristine-source): Update hash.
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* gnu/packages/patches/icu4c-CVE-2020-10531.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/icu4c.scm (icu4c)[replacement]: New field.
(icu4c/fixed): New variable.
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* gnu/packages/cran.scm (r-remoter): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/cran.scm (r-getpass): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/cran.scm (r-argon2): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/emacs-xyz.scm (emacs-chronometrist): New variable.
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* gnu/packages/cpp.scm (abseil-cpp): Update to 20200225.1.
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* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr)[native-inputs]: Remove
AUTOGEN so that man pages are not regenerated with a fresh date.
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* gnu/packages/finance.scm (electron-cash): Update to 4.0.14.
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