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* gnu: proj: Update to 6.3.1.Guillaume Le Vaillant2020-03-09
| | | | * gnu/packages/geo.scm (proj): Update to 6.3.1.
* gnu: Add perl-math-vecstat.Roel Janssen2020-03-09
| | | | * gnu/packages/perl.scm (perl-math-vecstat): New variable.
* gnu: python-semver: Fix build.Roel Janssen2020-03-09
| | | | | | * gnu/packages/python-xyz.scm: Add python-appdirs, python-distlib, python-importlib-metadata, python-filelock, and python-six to native-inputs in order to run the test suite.
* gnu: Fix build of python-velocyto.Roel Janssen2020-03-09
| | | | | * gnu/packages/bioinformatics.scm (python-velocyto): Add python-joblib to native-inputs to make the test suite run succesfully.
* gnu: Add vim-asyncrun.Efraim Flashner2020-03-09
| | | | * gnu/packages/vim.scm (vim-asyncrun): New variable.
* gnu: Add nyancat.Efraim Flashner2020-03-09
| | | | * gnu/packages/toys.scm (nyancat): New variable.
* gnu: Update python-statsmodels to 0.11.1.Roel Janssen2020-03-09
| | | | * gnu/packages/statistics.scm (python-statsmodels): Update to 0.11.1.
* gnu: Add sycamore.Pierre Neidhardt2020-03-09
| | | | * gnu/packages/lisp-xyz.scm (cl-sycamore, sbcl-sycamore): New variables.
* gnu: emacs-sly: Update to 20200228.Pierre Neidhardt2020-03-09
| | | | * gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20200228.
* gnu: r-desolve: Update to 1.28.Ricardo Wurmus2020-03-09
| | | | * gnu/packages/cran.scm (r-desolve): Update to 1.28.
* gnu: r-umap: Update to 0.2.5.0.Ricardo Wurmus2020-03-09
| | | | | * gnu/packages/cran.scm (r-umap): Update to 0.2.5.0. [native-inputs]: Add r-knitr.
* gnu: r-rcppannoy: Update to 0.0.16.Ricardo Wurmus2020-03-09
| | | | | * gnu/packages/cran.scm (r-rcppannoy): Update to 0.0.16. [native-inputs]: Remove r-knitr.
* gnu: r-quantmod: Update to 0.4-16.Ricardo Wurmus2020-03-09
| | | | * gnu/packages/cran.scm (r-quantmod): Update to 0.4-16.
* gnu: r-vcd: Update to 1.4-6.Ricardo Wurmus2020-03-09
| | | | * gnu/packages/cran.scm (r-vcd): Update to 1.4-6.
* gnu: r-ggrepel: Update to 0.8.2.Ricardo Wurmus2020-03-09
| | | | * gnu/packages/cran.scm (r-ggrepel): Update to 0.8.2.
* gnu: guix-data-service: Update to 0.0.1-18.18eb9df.Christopher Baines2020-03-08
| | | | | | * gnu/packages/web.scm (guix-data-service): Update to 0.0.1-18.18eb9df. (inputs, native-inputs): Switch to using the Guile 3 package variants where applicable.
* gnu: python-virtualenv: Update to 20.0.8.Jakub Kądziołka2020-03-09
| | | | | | | | * gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.0.8. [arguments]: Remove the now-redundant 'disable-failing-test phase. [native-inputs]: Add python-setuptools and python-setuptools-scm. [inputs]: Add python-{appdirs, distlib, filelock, six, importlib-metadata}.
* gnu: python-xyz: Add python-filelock.Jakub Kądziołka2020-03-09
| | | | * gnu/packages/python-xyz.scm (python-filelock): New variable.
* gnu: python-xyz: Add python-distlib.Jakub Kądziołka2020-03-09
| | | | * gnu/packages/python-xyz.scm (python-distlib): New variable.
* gnu: ngless: Update to 1.1.0.Ricardo Wurmus2020-03-08
| | | | * gnu/packages/bioinformatics.scm (ngless): Update to 1.1.0.
* gnu: Add jack-select.Ricardo Wurmus2020-03-08
| | | | * gnu/packages/music.scm (jack-select): New variable.
* gnu: taxtastic: Update to 0.8.11.Ricardo Wurmus2020-03-08
| | | | | | | | * gnu/packages/bioinformatics.scm (taxtastic): Update to 0.8.11. [source]: Fetch from Github. [arguments]: Build with default Python; add phases 'prepare-directory, 'python37-compatibility, and update 'check phase. [propagated-inputs]: Replace Python 2 variants with Python 3 variants.
* gnu: guile-next: Revert to 3.0.0.Ludovic Courtès2020-03-08
| | | | | | | | Guile 3.0.1 segfaults while building guix-system-tests.drv on and "guile3.0-guix" on x86_64-linux. * gnu/packages/guile.scm (guile-next): Revert to 3.0.0. (guile-3.0):
* gnu: Add perl-config-inifiles.Roel Janssen2020-03-08
| | | | * gnu/packages/perl.scm (perl-config-inifiles): New variable.
* gnu: Add perl-attribute-util.Roel Janssen2020-03-08
| | | | * gnu/packages/perl.scm (perl-attribute-util): New variable.
* gnu: Add font-opendyslexic.Efraim Flashner2020-03-08
| | | | | * gnu/packages/fonts.scm (font-opendyslexic): New variable. (font-open-dyslexic): Mark as deprecated package.
* gnu: beep: Remove dependency on GCC 8.Ludovic Courtès2020-03-08
| | | | * gnu/packages/terminals.scm (beep)[native-inputs]: Remove.
* gnu: beep: Update to 1.4.9.Vincent Legoll2020-03-08
| | | | | | * gnu/packages/terminals.scm (beep): Update to 1.4.9. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: guile-next: Update to 3.0.1.Ludovic Courtès2020-03-08
| | | | * gnu/packages/guile.scm (guile-3.0): Update to 3.0.1. Use "mirror://" URL.
* gnu: r-robust: Update to 0.5-0.0.base-for-series-3110Ricardo Wurmus2020-03-08
| | | | * gnu/packages/statistics.scm (r-robust): Update to 0.5-0.0.
* gnu: r-rapidjsonr: Update to 1.2.0.Ricardo Wurmus2020-03-08
| | | | * gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.0.
* gnu: r-atacseqqc: Update to 1.10.3.Ricardo Wurmus2020-03-08
| | | | | * gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3. [native-inputs]: Add r-knitr.
* gnu: Reword and extend descriptions for some KDE packages.Hartmut Goebel2020-03-08
| | | | | | | | | | * gnu/packages/kde-multimedia.scm (libkcompatdisc)[description]: Extend. * gnu/packages/kde-pim.scm (akonadi-search, kalarmcal, kdemailimporter, kdepim-apps-libs, kidentitymanagement, kldap, kmailtransport, kmbox, kmime, kontactinterface, kpimtextedit)[description]: Reword and extend. (ktnef, kpimcommon, libkdepim)[synopsis, description]: Reword and extend. (kmailtransport)[synopsis]: Fix space. * gnu/packages/kde-systemtools.scm (khelpcenter)[description]: Extend.
* gnu: Add emacs-org-journal.Martin Becze2020-03-08
| | | | * gnu/packages/emacs-xyz.scm (emacs-org-journal): New Variable.
* gnu: python-umap-learn: Fix build.Roel Janssen2020-03-08
| | | | | * gnu/packages/machine-learning.scm (python-umap-learn): Add python-joblib to run the test suite.
* gnu: QEMU: Fix CVE-2020-8608.Leo Famulari2020-03-07
| | | | | | * gnu/packages/patches/qemu-CVE-2020-8608.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/virtualization.scm (qemu)[source]: Use it.
* gnu: brotli: Remove packageLars-Dominik Braun2020-03-07
| | | | | | | | | Same package is provided by google-brotli. * gnu/packages/compression.scm (brotli): Redefine as a deprecated alias for "google-brotli". Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: woff2: Update to 1.0.2Lars-Dominik Braun2020-03-07
| | | | | | | | * gnu/packages/fontutils.scm (woff2): Update to 1.0.2 and switch to cmake * gnu/packages/patches/woff2-libbrotli.patch: Remove * gnu/local.mk (dist_patch_DATA): Remove patch Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: ccache: Fix indentationVincent Legoll2020-03-07
| | | | | | * gnu/packages/ccache.scm (ccache): Fix indentation Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: ccache: Update to 3.7.7.Vincent Legoll2020-03-07
| | | | | | | | gnu/packages/ccache.scm (ccache): Update to 3.7.7, update homepage to ccache.dev, get source code from github, remove fortran 77 from description. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: eudev: Add variant with corrected Btrfs rules.Ludovic Courtès2020-03-07
| | | | | | | | Discussed at <https://bugs.gnu.org/39926>. * gnu/packages/linux.scm (eudev/btrfs-fix): New variable. * gnu/services/base.scm (<udev-configuration>)[udev]: Default to it. (udev-service): Likewise for #:udev.
* gnu: guile: Add 2.2.7.Ludovic Courtès2020-03-07
| | | | | | | | * gnu/packages/guile.scm (guile-2.2.7): New variable. (guile-2.2/bug-fix): Redefine as a deprecated alias for GUILE-2.2.7. * gnu/packages/admin.scm (shepherd)[native-inputs, inputs]: Use GUILE-2.2.7. * gnu/packages/patches/guile-finalization-crash.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: emacs-xr: Update to 1.17.Nicolas Goaziou2020-03-07
| | | | * gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.17.
* gnu: emacs-relint: Update to 1.15.Nicolas Goaziou2020-03-07
| | | | * gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.15.
* gnu: r-dplyr: Update to 0.8.5.Ricardo Wurmus2020-03-07
| | | | | * gnu/packages/statistics.scm (r-dplyr): Update to 0.8.5. [native-inputs]: Add r-knitr.
* gnu: r-survival: Update to 3.1-11.Ricardo Wurmus2020-03-07
| | | | * gnu/packages/statistics.scm (r-survival): Update to 3.1-11.
* gnu: r-lifecycle: Update to 0.2.0.Ricardo Wurmus2020-03-07
| | | | | * gnu/packages/cran.scm (r-lifecycle): Update to 0.2.0. [native-inputs]: Add r-knitr.
* gnu: r-covr: Update to 3.5.0.Ricardo Wurmus2020-03-07
| | | | | * gnu/packages/cran.scm (r-covr): Update to 3.5.0. [native-inputs]: Add r-knitr.
* gnu: r-pscl: Update to 1.5.5.Ricardo Wurmus2020-03-07
| | | | * gnu/packages/cran.scm (r-pscl): Update to 1.5.5.
* gnu: r-mosaic: Add r-knitr.Ricardo Wurmus2020-03-07
| | | | * gnu/packages/cran.scm (r-mosaic)[native-inputs]: Add r-knitr.
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