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* gnu: Separate Python core packages from the rest.Ricardo Wurmus2019-01-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm: Move hundreds of package definitions from here... * gnu/packages/python-xyz.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/benchmark.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/cluster.scm, gnu/packages/compression.scm, gnu/packages/connman.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/direct-connect.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/elf.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/enlightenment.scm, gnu/packages/finance.scm, gnu/packages/fltk.scm, gnu/packages/fontutils.scm, gnu/packages/freedesktop.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/gtk.scm, gnu/packages/ham-radio.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/kde-frameworks.scm, gnu/packages/key-mon.scm, gnu/packages/libffi.scm, gnu/packages/libreoffice.scm, gnu/packages/libusb.scm, gnu/packages/lirc.scm, gnu/packages/logging.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/medical.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nutrition.scm, gnu/packages/openldap.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/polkit.scm, gnu/packages/protobuf.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/qt.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/search.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/simulation.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wicd.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm: Update module references.
* gnu: docker-cli: Don't install the same executable twice.Danny Milosavljevic2019-01-15
| | | | | | | Reported by Meiyo Peng <meiyo.peng@gmail.com>. * gnu/packages/docker.scm (docker-cli)[arguments]<#:phases>[install]: Don't install the same executable twice.
* gnu: python-numpy-documentation: Add missing packages to texlive-union.Ricardo Wurmus2019-01-15
| | | | | * gnu/packages/python.scm (python-numpy-documentation)[native-inputs]: Add texlive-fonts-cm-super and texlive-latex-needspace to texlive-union.
* gnu: texlive-fonts-amsfonts: Install type1 fonts.Ricardo Wurmus2019-01-15
| | | | | | * gnu/packages/tex.scm (texlive-fonts-amsfonts)[native-inputs]: Fetch type1 font files. [arguments]: Install them.
* gnu: texlive-bin: Do not truncate output lines.Ricardo Wurmus2019-01-15
| | | | | * gnu/packages/tex.scm (texlive-bin)[arguments]: Change default line limits in build phase.
* gnu: Add texlive-luatex-luaotfload.Ricardo Wurmus2019-01-15
| | | | * gnu/packages/tex.scm (texlive-luatex-luaotfload): New variable.
* gnu: Add texlive-fonts-lm.Ricardo Wurmus2019-01-15
| | | | * gnu/packages/tex.scm (texlive-fonts-lm): New variable.
* gnu: Add texlive-fonts-cm-super.Ricardo Wurmus2019-01-15
| | | | * gnu/packages/tex.scm (texlive-fonts-cm-super): New variable.
* gnu: texlive-union: Implement in terms of texlive-base.Ricardo Wurmus2019-01-15
| | | | * gnu/packages/tex.scm (texlive-union): Inherit from texlive-base.
* gnu: Add texlive-base.Ricardo Wurmus2019-01-15
| | | | * gnu/packages/tex.scm (texlive-base): New variable.
* gnu: texlive-bin: Add native search paths.Ricardo Wurmus2019-01-15
| | | | | * gnu/packages/tex.scm (texlive-bin)[native-search-paths]: Add specifications for TEXMF and TEXMFCNF.
* gnu: texlive-union: Wrap programs weakly.Ricardo Wurmus2019-01-15
| | | | | * gnu/packages/tex.scm (texlive-union)[arguments]: Wrap programs with TEXMFCNF and TEXMF so that environment variables take precedence.
* gnu: texlive-latex-fontspec: Install default fontspec.cfg.Ricardo Wurmus2019-01-15
| | | | | * gnu/packages/tex.scm (texlive-latex-fontspec)[arguments]: Add build phase to install fontspec.cfg.
* gnu: opencv: Update configure flags.Efraim Flashner2019-01-15
| | | | | * gnu/packages/image-processing.scm (opencv)[arguments]: Change the configure-flags on a per-architecture basis.
* gnu: guile-commonmark: Install .scm files in the right place.Ludovic Courtès2019-01-15
| | | | | | | Previously they'd be installed in PREFIX/share/share/guile/site. * gnu/packages/guile.scm (guile-commonmark)[modules, snippet]: New fields.
* gnu: font-dosis: Switch to font-build-system.Arun Isaac2019-01-15
| | | | | | * gnu/packages/fonts.scm (font-dosis): Switch to font-build-system. [source]: Use url-fetch/zipbomb. [native-inputs]: Remove unzip.
* gnu: python-git-review: Update to 1.27.0.Clément Lassieur2019-01-15
| | | | | * gnu/packages/openstack.scm (python-git-review): Update to 1.27.0. [arguments]: Get the 'wrap-program' phase to return #t.
* gnu: prosody: Update to 0.11.2.Clément Lassieur2019-01-15
| | | | * gnu/packages/messaging.scm (prosody): Update to 0.11.2.
* gnu: youtube-dl: Update to 2019.01.10.Efraim Flashner2019-01-15
| | | | | * gnu/packages/video.scm (youtube-dl): Update to 2019.01.10. [source]: Update uri.
* gnu: guile-ssh: Use 'git-fetch'.Ludovic Courtès2019-01-14
| | | | * gnu/packages/ssh.scm (guile-ssh)[source]: Change to 'git-fetch'.
* gnu: libssh: Update to 0.8.6.Ludovic Courtès2019-01-14
| | | | | | | | | * gnu/packages/patches/libssh-hostname-parser-bug.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ssh.scm (libssh): Update to 0.8.6. [source](patches): Remove. [arguments]: Add #:phases. (guile-ssh)[source](modules, snippet]: New fields.
* gnu: guile-json: Add 3.1.0.Ludovic Courtès2019-01-14
| | | | * gnu/packages/guile.scm (guile-json-3): New variable.
* gnu: Move Perl compression packages to new module.Ricardo Wurmus2019-01-14
| | | | | | | | | | * gnu/packages/compression.scm (perl-compress-raw-bzip2, perl-compress-raw-zlib, perl-io-compress, perl-archive-zip, perl-archive-extract): Move from here... * gnu/packages/perl-compression.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ci.scm, gnu/packages/libreoffice.scm, gnu/packages/perl.scm: Adjust references.
* gnu: texlive-latex-fontspec: Propagate l3packages.Ricardo Wurmus2019-01-14
| | | | | | * gnu/packages/tex.scm (texlive-latex-fontspec)[inputs]: Remove texlive-latex-l3kernel. [propagated-inputs]: Add texlive-latex-l3packages.
* gnu: texlive-latex-l3packages: Propagate l3kernel.Ricardo Wurmus2019-01-14
| | | | | | * gnu/packages/tex.scm (texlive-latex-l3packages)[inputs]: Move texlive-latex-l3kernel from here... [propagated-inputs]: ...to here.
* gnu: Add texlive-latex-changepage.Ricardo Wurmus2019-01-14
| | | | * gnu/packages/tex.scm (texlive-latex-changepage): New variable.
* gnu: Add texlive-generic-babel-german.Ricardo Wurmus2019-01-14
| | | | * gnu/packages/tex.scm (texlive-generic-babel-german): New variable.
* gnu: texlive-latex-base: Install configuration files.Ricardo Wurmus2019-01-14
| | | | | | | * gnu/packages/tex.scm (texlive-latex-base)[arguments]: Install all configuration files. [native-inputs]: Move texlive-generic-hyph-utf8 from here... [propagated-inputs]: ...to here.
* gnu: opencv: Use 'git-fetch'.Efraim Flashner2019-01-14
| | | | | | | | * gnu/packages/image-processing.scm (opencv)[source]: Use 'git-fetch'. [native-inputs]: Use 'git-fetch' for opencv_extras and opencv_contrib. Remove unzip. [arguments]: Update custom 'unpack-submodule-sources accordingly. Update paths in configure-flags, 'diable-broken-tests phase.
* gnu: python-django-filter: Use 'invoke'.Efraim Flashner2019-01-14
| | | | | * gnu/packages/django.scm (python-django-filter)[arguments]: Use 'invoke'.
* gnu: opencv: Loosen test suite failures.Efraim Flashner2019-01-14
| | | | | | | | * gnu/packages/image-processing.scm (opencv)[native-inputs]: Add patch to opencv-contrib. [arguments]: Update 'unpack-submodule-sources phase. * gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: opencv: Update configure flags.Efraim Flashner2019-01-14
| | | | | * gnu/packages/image-processing.scm (opencv)[arguments]: Don't use precompiled headers. Enable all available CPU optimizations.
* gnu: opencv: Don't hardcode build directories.Efraim Flashner2019-01-14
| | | | | | * gnu/packages/image-processing.scm (opencv)[arguments]: Change OPENCV_EXTRA_MODULES_PATH and OPENCV_TEST_DATA_PATH to use 'getcwd' instead of hardcoding the build path.
* gnu: opencv: Fix building on non-x86_64 systems.Efraim Flashner2019-01-14
| | | | | | * gnu/packages/image-processing.scm (opencv)[arguments]: Add configure-flag to disable carotene. Don't require x86_64 CPU except on x86_64. Fix typo.
* gnu: gnurl: Update to 7.63.0.Efraim Flashner2019-01-14
| | | | * gnu/packages/gnunet.scm (gnurl): Update to 7.63.0.
* gnu: emacs-pass: Update to 1.8.Clément Lassieur2019-01-14
| | | | * gnu/packages/emacs.scm (emacs-pass): Update to 1.8.
* gnu: dosbox: Update to 0.74-2.Rutger Helling2019-01-14
| | | | | * gnu/packages/emulators.scm (dosbox): Update to 0.74-2. [arguments]: Use invoke in 'autogen.sh phase.
* gnu: linux-libre: Update to 4.20.2.Mark H Weaver2019-01-14
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.20.2. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.15.Mark H Weaver2019-01-14
| | | | | * gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.15. (%linux-libre-4.19-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.93.Mark H Weaver2019-01-14
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.93. (%linux-libre-4.14-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.150.Mark H Weaver2019-01-14
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.150.
* gnu: linux-libre@4.4: Update to 4.4.170.Mark H Weaver2019-01-14
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.170.
* gnu: Add ocaml-merlin.Gabriel Hondet2019-01-13
| | | | | | * gnu/packages/ocaml.scm (ocaml-merlin): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-tldr.Gabriel Hondet2019-01-13
| | | | | | * gnu/packages/emacs.scm (emacs-tldr): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-miniboa.Christopher Baines2019-01-13
| | | | | | python2-miniboa is required for the linkchecker testsuite. * gnu/packages/python.scm (python-miniboa, python2-miniboa): New variable.
* gnu: python-pillow: Update to 5.4.1.Christopher Baines2019-01-13
| | | | | | | | I'm looking at this, as this release fixes an issue with the Django testsuite: https://github.com/python-pillow/Pillow/pull/3525 * gnu/packages/python.scm (python-pillow): Update to 5.4.1.
* gnu: r-biocgenerics: Move to bioconductor.Ricardo Wurmus2019-01-13
| | | | | * gnu/packages/bioinformatics.scm (r-biocgenerics): Move from here... * gnu/packages/bioconductor.scm (r-biocgenerics): ...to here.
* gnu: r-annotate: Move to bioconductor.Ricardo Wurmus2019-01-13
| | | | | * gnu/packages/bioinformatics.scm (r-annotate): Move from here... * gnu/packages/bioconductor.scm (r-annotate): ...to here.
* gnu: r-vegan: Move from bioinformatics to cran.Ricardo Wurmus2019-01-13
| | | | | * gnu/packages/bioinformatics.scm (r-vegan): Move from here... * gnu/packages/cran.scm (r-vegan): ...to here.
* gnu: conda: Use 'invoke'.Efraim Flashner2019-01-13
| | | | * gnu/packages/package-management.scm (conda)[arguments]: Use 'invoke'.
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