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* gnu: Add alertmanager.Christopher Baines2020-04-20
| | | | * gnu/packages/monitoring.scm (alertmanager): New variable.
* gnu: Add prometheus.Christopher Baines2020-04-20
| | | | * gnu/packages/monitoring.scm (prometheus): New variable.
* gnu: cgit: Update Git source code to 2.25.4.base-for-series-3609Leo Famulari2020-04-20
| | | | * gnu/packages/version-control.scm (cgit)[inputs]: Update git-source to 2.25.4.
* gnu: Git: Update to 2.26.2 [fixes CVE-2020-11008].Leo Famulari2020-04-20
| | | | | * gnu/packages/version-control.scm (git): Update to 2.26.2. [native-inputs]: Update git-manpages.
* gnu: xfce.scm: Sort module imports.Naga Malleswari2020-04-20
| | | | | | * gnu/packages/xfce.scm: Sort module imports. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: libqalculate: Fix libcurl gnutls CA cert bundle file.R Veera Kumar2020-04-20
| | | | | | | | * gnu/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (libqalculate)[source]: Use it. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: Add midori.Raghav Gururajan2020-04-20
| | | | | | * gnu/packages/web-browsers.scm (midori): New variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* gnu: Add r-bridgesampling.Eric Brown2020-04-20
| | | | | | * gnu/packages/cran.scm (r-bridgesampling): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: java-bouncycastle: Don't use unstable tarball.Efraim Flashner2020-04-20
| | | | | * gnu/packages/java.scm (java-bouncycastle)[source]: Download using git-fetch. Use upstream's repo, not a mirror.
* gnu: java-lz4: Don't use unstable tarball.Efraim Flashner2020-04-20
| | | | | * gnu/packages/java.scm (java-lz4)[source]: Download using git-fetch. [arguments]: Add phase to make files writable.
* gnu: java-fest-assert: Don't use unstable tarball.Efraim Flashner2020-04-20
| | | | | * gnu/packages/java.scm (java-fest-assert)[source]: Download using git-fetch.
* gnu: java-fest-test: Don't use unstable tarball.Efraim Flashner2020-04-20
| | | | | * gnu/packages/java.scm (java-fest-test)[source]: Download using git-fetch.
* gnu: java-fest-util: Don't use unstable tarball.Efraim Flashner2020-04-20
| | | | | * gnu/packages/java.scm (java-fest-util)[source]: Download using git-fetch.
* gnu: graphene: Update to 1.10.0.Efraim Flashner2020-04-20
| | | | | | | | * gnu/packages/gtk.scm (graphene): Update to 1.10.0. [build-system]: Switch to meson-build-system. [arguments]: Update configure-flags to not install tests. [inputs]: Remove python2. Move gobject-introspection ... [native-inputs]: ... to here. Remove autoconf, automake, libtool, which.
* gnu: sparql-query: Sort inputs alphabetically.Efraim Flashner2020-04-20
| | | | * gnu/packages/databases.scm (sparql-query)[inputs]: Sort alphabetically.
* gnu: sparql-query: Don't use unstable tarball.Efraim Flashner2020-04-20
| | | | | * gnu/packages/databases.scm (sparql-query)[source]: Download using git-fetch.
* gnu: mu: Update to 1.4.Pierre Langlois2020-04-19
| | | | | | | * gnu/packages/mail.scm (mu): Update to 1.4. [arguments]: Remove 'fix-date-tests phase. Add 'patch-bin-sh-in-tests phase. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: php: Update to 7.4.5.Julien Lepiller2020-04-19
| | | | * gnu/packages/php.scm (php): Update to 7.4.5.
* Revert "gnu: libxfce4util: Update to 4.15.0."base-for-series-3603Danny Milosavljevic2020-04-19
| | | | This reverts commit c0bff513a41a12b446565f3c0de06343acbb6e23.
* gnu: emacs-org-superstar: Update to 1.2.1.Nicolas Goaziou2020-04-19
| | | | * gnu/packages/emacs-xyz.scm (emacs-org-superstar): Update to 1.2.1.
* gnu: Add notification-daemon.Raghav Gururajan2020-04-19
| | | | | | * gnu/packages/gnome.scm (notification-daemon): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add trezord-udev-rules.Martin Becze2020-04-19
| | | | | | * gnu/packages/finance.scm (trezord-udev-rules): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-cython: Update to 0.29.16.base-for-series-3597base-for-series-3596base-for-series-3595Efraim Flashner2020-04-18
| | | | * gnu/packages/python-xyz.scm (python-cython): Update to 0.29.16.
* gnu: qrcodegen-cpp: Update to 1.6.0.Efraim Flashner2020-04-18
| | | | * gnu/packages/aidc.scm (qrcodegen-cpp): Update to 1.6.0.
* gnu: vim-asyncrun: Update to 2.7.5.Efraim Flashner2020-04-18
| | | | * gnu/packages/vim.scm (vim-asyncrun): Update to 2.7.5.
* gnu: libavif: Update to 0.7.1.Leo Famulari2020-04-18
| | | | | * gnu/packages/image.scm (libavif): Update to 0.7.1. [arguments]: Run the test suite.
* gnu: Add node-semver.Giacomo Leidi2020-04-18
| | | | | | * gnu/packages/node-xyz.scm (node-semver): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: chess: Update to 6.2.6.Efraim Flashner2020-04-18
| | | | * gnu/packages/games.scm (chess): Update to 6.2.6.
* gnu: chess: Set upstream name and ftp-directory.Efraim Flashner2020-04-18
| | | | | * gnu/packages/games.scm (chess)[properties]: New field. Add upstream-name and ftp-directory.
* gnu: Use the test-only time zone database where appropriate.Leo Famulari2020-04-17
| | | | | | | | | | * gnu/packages/backup.scm (duplicity)[inputs]: Remove tzdata. [native-inputs]: Add tzdata-for-tests. * gnu/packages/finance.scm (ledger): Likewise. * gnu/packages/compression.scm (lhasa)[native-inputs]: Use tzdata-for-tests. * gnu/packages/cran.scm (r-rstan)[native-inputs]: Likewise. * gnu/packages/databases.scm (mongodb)[native-inputs]: Likewise. * gnu/packages/kde-frameworks.scm (kdelibs4support)[native-inputs]: Likewise.
* gnu: trezord: Update to 2.0.29.Martin Becze2020-04-17
| | | | | | * gnu/packages/finance.scm (trezord): Update to 2.0.29. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: fulcrum: Update to 1.1.0TomZ2020-04-17
| | | | | | * gnu/packages/finance.scm (fulcrum): Update to 1.1.0 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: linux-libre: Update to 5.4.33.Mark H Weaver2020-04-17
| | | | | * gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.33. (linux-libre-5.4-pristine-source): Update hash.
* gnu: linux-libre@5.6: Update to 5.6.5.Mark H Weaver2020-04-17
| | | | | * gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.5. (linux-libre-5.6-pristine-source): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.116.Mark H Weaver2020-04-17
| | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.116. (linux-libre-4.19-pristine-source): Update hash.
* gnu: ungoogled-chromium: Update to 81.0.4044.113-0.b484ad4 [fixes ↵Marius Bakke2020-04-17
| | | | | | | CVE-2020-6457]. * gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.113. (%chromium-origin): Update hash.
* gnu: python-pygenometracks: Update to 3.3.Ricardo Wurmus2020-04-17
| | | | | | | * gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.3. [arguments]: Add phase "relax-requirements"; disable tests. [propagated-inputs]: Remove python-configparser and python-hicexplorer; add python-gffutils, python-pysam, and python-tqdm.
* gnu: Add python-hicmatrix.Ricardo Wurmus2020-04-17
| | | | * gnu/packages/bioinformatics.scm (python-hicmatrix): New variable.
* gnu: python-cooler: Update to 0.8.7.Ricardo Wurmus2020-04-17
| | | | | | | | * gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7. [propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and python-simplejson. [native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add python-pytest.
* gnu: python-pybigwig: Update to 0.3.17.Ricardo Wurmus2020-04-17
| | | | * gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.17.
* gnu: python-tables: Update to 3.6.1.Ricardo Wurmus2020-04-17
| | | | | * gnu/packages/python-xyz.scm (python-tables): Update to 3.6.1. [arguments]: Adjust use-gcc phase.
* gnu: python-podcastparser: Run tests.Pierre Langlois2020-04-17
| | | | | | | | * gnu/packages/gpodder.scm (python-podcastparser)[native-inputs]: Add python-coverage. [arguments]: Replace 'check phase and invoke "nosetests". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: gpodder: Run tests.Pierre Langlois2020-04-17
| | | | | | | | * gnu/packages/gpodder.scm (gpodder)[native-inputs]: Add python-coverage and python-minimock. [arguments]: Replace the 'check phase and invoke "make unittest". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: gpodder: Update to 3.10.15.Pierre Langlois2020-04-17
| | | | | | * gnu/packages/gpodder.scm (gpodder): Update to 3.10.15. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dovecot: Add libunwind input for arm.Pierre Langlois2020-04-17
| | | | | | * gnu/packages/mail.scm (dovecot)[inputs]: Add libunwind when targetting arm. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: khard: Move propagated-inputs to inputs.Efraim Flashner2020-04-17
| | | | | | | | | As a package one would install we can rely on wrapping the package and not propagating inputs to make it work correctly. * gnu/packages/mail.scm (khard)[propagated-inputs]: Move all python packages ... [inputs]: ... to here.
* gnu: khal: Move propagated inputs to inputs.Efraim Flashner2020-04-17
| | | | | | | | | As a package one would install we can rely on wrapping the package and not propagating inputs to make it work correctly. * gnu/packages/calendar.scm (khal)[propagated-inputs]: Move all python packages... [inputs]: ... to here.
* gnu: khal: Fix build with python-urwid-2.1.0.Efraim Flashner2020-04-17
| | | | | * gnu/packages/calendar.scm (khal)[source]: Download upstream patch to fix compatibility with newer python-urwid.
* gnu: diffoscope.scm: Add missing import.Christopher Baines2020-04-17
| | | | | | This follows on from 2d9886f7e8838d6aeb0cfb20a2a49fc7d8fb233c. * gnu/packages/diffoscope.scm: Import (gnu packages maths).
* gnu: diffoscope: Update to 141.Vagrant Cascadian2020-04-16
| | | | | | * gnu/packages/diffoscope (diffoscope): Update to 141. [arguments]: Add phase add-known-tools. [native-inputs]: Add hdf5.
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