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* gnu: r-chipcomp: Update to 1.12.0.•••* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0. Ricardo Wurmus2018-11-07
* gnu: r-bayseq: Update to 2.16.0.•••* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0. Ricardo Wurmus2018-11-07
* gnu: r-chippeakanno: Update to 3.16.0.•••* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0. [propagated-inputs]: Remove r-biocinstaller; add r-biocmanager. Ricardo Wurmus2018-11-07
* gnu: r-graph: Update to 1.60.0.•••* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0. Ricardo Wurmus2018-11-07
* gnu: r-multtest: Update to 2.38.0.•••* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0. Ricardo Wurmus2018-11-07
* gnu: r-qdnaseq: Update to 1.18.0.•••* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0. Ricardo Wurmus2018-11-07
* gnu: r-cghcall: Update to 2.44.0.•••* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0. Ricardo Wurmus2018-11-07
* gnu: r-cghbase: Update to 1.42.0.•••* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0. Ricardo Wurmus2018-11-07
* gnu: r-marray: Update to 1.60.0.•••* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0. Ricardo Wurmus2018-11-07
* gnu: r-diffbind: Update to 2.10.0.•••* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0. Ricardo Wurmus2018-11-07
* gnu: r-hpar: Update to 1.24.0.•••* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0. Ricardo Wurmus2018-11-07
* gnu: Add r-biocmanager.•••* gnu/packages/cran.scm (r-biocmanager): New variable. Ricardo Wurmus2018-11-07
* gnu: Add r-ncdf4.•••* gnu/packages/cran.scm (r-ncdf4): New variable. Ricardo Wurmus2018-11-07
* gnu: Add r-rcppannoy.•••* gnu/packages/cran.scm (r-rcppannoy): New variable. Ricardo Wurmus2018-11-07
* gnu: slang: Use a correct location for terminfo dirs.•••As termcap is disabled and no terminfo directory is given, slang is not able to query terminal capabilities. Specifying a correct path for terminfo will automatically disable termcap support in the configuration. * gnu/packages/slang.scm (slang)[source]: Remove the snippet disabling termcap. [arguments]: Set MISC_TERMINFO_DIRS to a correct location. Mathieu Othacehe2018-11-07
* gnu: terminals: Change libtsm and kmscon repositories.•••Those two packages (from the same author) are no longer maintained and do not even compile. Switch to a fork that is maintained even if it does not have any release yet. * gnu/packages/terminals.scm (libtsm)[origin]: Use "https://github.com/Aetf/libtsm" as new origin and switch to git-fetch method. (kmscon)[origin]: Use "https://github.com/Aetf/kmscon" as new origin and switch to git-fetch method. Mathieu Othacehe2018-11-07
* gnu: Add guile-newt.•••* gnu/packages/guile.scm (guile-newt): New variable. Mathieu Othacehe2018-11-07
* gnu: kodi: Fix typo.•••This is a follow-up to 2c17bd7b2955beef4130d11b33e07e4fb3b234dc. * gnu/packages/kodi.scm (kodi)[arguments]: Remove unwanted symbols. Efraim Flashner2018-11-07
* gnu: LibreOffice: Update to 6.1.3.2.•••* gnu/packages/libreoffice.scm (libreoffice): Update to 6.1.3.2. Leo Famulari2018-11-06
* gnu: GnuPG: Update to 2.2.11.•••* gnu/packages/gnupg.scm (gnupg): Update to 2.2.11. Leo Famulari2018-11-06
* gnu: nginx: Update to 1.14.1 [security fixes].•••This fixes CVE-2018-16843, CVE-2018-16844, and CVE-2018-16845. * gnu/packages/web.scm (nginx): Update to 1.14.1. Marius Bakke2018-11-06
* gnu: Syncthing: Update to 0.14.52.•••* gnu/packages/syncthing.scm (syncthing): Update to 0.14.52. Leo Famulari2018-11-06
* gnu: libgit2: Work around test failures on 32-bit platforms.•••* gnu/packages/patches/libgit2-oom-test.patch: New file. * gnu/packages/version-control.scm (libgit2)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès2018-11-06
* gnu: Add xcb-util-errors.•••* gnu/packages/xorg.scm (xcb-util-errors): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Stefan Stefanović2018-11-06
* gnu: guile-sqlite3: Update home page.•••* gnu/packages/guile.scm (guile-sqlite3)[home-page]: Update. Ludovic Courtès2018-11-06
* gnu: Add r-weights.•••* gnu/packages/cran.scm (r-weights): New variable. Signed-off-by: Gábor Boskovits <boskovits@gmail.com> lakshmi2018-11-06
* gnu: youtube-dl: Update to 2018.11.03.•••* gnu/packages/video.scm (youtube-dl): Update to 2018.11.03. Tobias Geerinckx-Rice2018-11-06
* gnu: terraform-docs: Update to 0.5.0.•••* gnu/packages/terraform.scm (terraform-docs): Update to 0.5.0. [native-inputs]: Remove them all. Tobias Geerinckx-Rice2018-11-06
* gnu: jq: Don't use NAME in source URI.•••* gnu/packages/web.scm (jq)[source]: Code more hard. Tobias Geerinckx-Rice2018-11-06
* gnu: jq: Update to 1.6.•••* gnu/packages/web.scm (jq): Update to 1.6. [source]: Remove upstreamed patch. * gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice2018-11-06
* gnu: ffmpeg: Update to 4.1.•••* gnu/packages/video.scm (ffmpeg): Update to 4.1. Rutger Helling2018-11-06
* Revert "gnu: c-ares: Update to 1.15.0."•••c-ares has more than 3000 dependant packages. This reverts commit b588adc96feec4498857ecb6d3537f746b0c0463. Efraim Flashner2018-11-06
* gnu: c-ares: Update to 1.15.0.•••* gnu/packages/adns.scm (c-ares): Update to 1.15.0. Efraim Flashner2018-11-06
* gnu: xf86-video-intel: Update to commit 0932a6b37ba6d5c9e916a1cb6ab89c3205b81...•••* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-11.0932a6b. Marius Bakke2018-11-05
* gnu: xapian: Update to 1.4.9.•••* gnu/packages/patches/xapian-revert-5489fb2f8.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/search.scm (xapian): Update to 1.4.9. [source](patches): Remove. (python-xapian-bindings): Update to 1.4.9. Marius Bakke2018-11-05
* gnu: libssh: Update to 0.7.7.•••* gnu/packages/ssh.scm (libssh): Update to 0.7.7. Marius Bakke2018-11-05
* gnu: strace: Update to 4.25.•••* gnu/packages/linux.scm (strace): Update to 4.25. Marius Bakke2018-11-05
* gnu: libmtp: Update to 1.1.16.•••* gnu/packages/libusb.scm (libmtp): Update to 1.1.16. Marius Bakke2018-11-05
* gnu: libgit2: Update to 0.26.8.•••* gnu/packages/version-control.scm (libgit2): Update to 0.26.8. Marius Bakke2018-11-05
* gnu: i3-wm: Update to 4.16.•••* gnu/packages/wm.scm (i3-wm): Update to 4.16. Marius Bakke2018-11-05
* gnu: libgphoto2: Update to 2.5.20.•••* gnu/packages/photo.scm (libgphoto2): Update to 2.5.20. Marius Bakke2018-11-05
* gnu: glm: Update to 0.9.9.3.•••* gnu/packages/maths.scm (glm): Update to 0.9.9.3. Marius Bakke2018-11-05
* gnu: ffmpeg: Update to 4.0.3.•••* gnu/packages/video.scm (ffmpeg): Update to 4.0.3. Marius Bakke2018-11-05
* gnu: ffmpeg@3.4: Update to 3.4.5.•••* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.5. Marius Bakke2018-11-05
* gnu: feh: Update to 2.28.1.•••* gnu/packages/image-viewers.scm (feh): Update to 2.28.1. Marius Bakke2018-11-05
* gnu: libsoup: Update to 2.64.2.•••* gnu/packages/gnome.scm (libsoup): Update to 2.64.2. Marius Bakke2018-11-05
* gnu: mono: Update home page.•••* gnu/packages/mono.scm (mono)[home-page]: Use HTTPS. Marius Bakke2018-11-05
* gnu: ruby-rack: Update to 2.0.6 [fixes CVE-2018-{16470,16471}].•••* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.6. Leo Famulari2018-11-05
* gnu: emacs-mu4e-conversation: Update to 20181105.•••* gnu/packages/emacs.scm (emacs-mu4e-conversation): Update to 20181105. Pierre Neidhardt2018-11-05
* gnu: Add emacs-helm-slime.•••* gnu/packages/emacs.scm (emacs-helm-slime): New variable. Pierre Neidhardt2018-11-05
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