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* gnu: r-rtracklayer: Update to 1.38.2.•••* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.2. Ricardo Wurmus2017-12-19
* gnu: r-limma: Update to 3.34.4.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.4. Ricardo Wurmus2017-12-19
* gnu: r-edger: Update to 3.20.2.•••* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.2. Ricardo Wurmus2017-12-19
* gnu: r-biocstyle: Update to 2.6.1.•••* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.1. Ricardo Wurmus2017-12-19
* gnu: r-dexseq: Update to 1.24.2.•••* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2. Ricardo Wurmus2017-12-19
* gnu: r-vegan: Update to 2.4-5.•••* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5. Ricardo Wurmus2017-12-19
* gnu: xfce4-session: Disable (duplicate) Gtk+ icon cache generation.•••* gnu/packages/xfce.scm (xfce4-session)[arguments]: Add make-flags to disable Gtk+ icon cache generation. Danny Milosavljevic2017-12-19
* gnu: wxmaxima: Update to 17.10.1.•••* gnu/packages/maths.scm (wxmaxima): Update to 17.10.1. Kei Kebreau2017-12-19
* gnu: Add quakespasm.•••* gnu/packages/games.scm (quakespasm): New variable. Signed-off-by: Kei Kebreau <kkebreau@posteo.net> nee2017-12-19
* gnu: gajim: Update to 0.16.9.•••* gnu/packages/messaging.scm (gajim): Update to 0.16.9. Ricardo Wurmus2017-12-19
* gnu: python-nbxmpp: Update to 0.6.1.•••* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.1. Ricardo Wurmus2017-12-19
* gnu: dino: Update to 0.0-3.f25fadde2.•••* gnu/packages/messaging.scm (dino): Update to 0.0-3.f25fadde2. Ricardo Wurmus2017-12-19
* gnu: pcsc-lite: Update to 1.8.23.•••* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23. [arguments]: Disable libsystemd check. Ricardo Wurmus2017-12-19
* gnu: antiword: Fix broken embedded directory name.•••* gnu/packages/textutils.scm (antiword)[arguments]: Replace "configure" phase to substitute reference to "/usr/share/antiword" with the actual directory in the store. Ricardo Wurmus2017-12-19
* gnu: Update gwl to 0.1.1.•••* gnu/packages/package-management.scm (gwl): Update to 0.1.1. Roel Janssen2017-12-19
* gnu: emulation-station: Add missing file-name field.•••* gnu/packages/games.scm (emulation-station)[source]: Add missing file-name field. Efraim Flashner2017-12-19
* gnu: Update r-cowplot to 0.9.2.•••* gnu/packages/statistics.scm (r-cowplot): Update to 0.9.2. Roel Janssen2017-12-19
* gnu: mpd: Update to 0.20.13.•••* gnu/packages/mpd.scm (mpd): Update to 0.20.13. Leo Famulari2017-12-19
* gnu: keepassxc: Update to 2.2.4.•••* gnu/packages/password-utils.scm (keepassxc): Update to 2.2.4. Leo Famulari2017-12-19
* gnu: GnuPG pinentry: Update to 1.1.0.•••* gnu/packages/gnupg.scm (pinentry-tty, pinentry-gtk2, pinentry-gnome3, pinentry-qt): Update to 1.1.0. Leo Famulari2017-12-18
* gnu: linux-libre: Update to 4.14.7.•••* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.7. (%linux-libre-hash): Update hash. Mark H Weaver2017-12-18
* gnu: linux-libre@4.9: Update to 4.9.70.•••* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.70. Mark H Weaver2017-12-18
* gnu: linux-libre@4.4: Update to 4.4.106.•••* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.106. Mark H Weaver2017-12-18
* gnu: termite: Update to 13.•••* gnu/packages/terminals.scm (termite): Update to 13. Marius Bakke2017-12-19
* gnu: pcsc-lite: Update to 1.8.23.•••* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.23. [arguments]<#:configure-flags>: Add "--disable-libsystemd". [license]: Adjust to removed sd-daemon files. Marius Bakke2017-12-19
* gnu: qemu: Update to 2.10.2.•••* gnu/packages/patches/qemu-CVE-2017-15118.patch, gnu/packages/patches/qemu-CVE-2017-15119.patch, gnu/packages/patches/qemu-CVE-2017-15268.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/virtualization.scm (qemu): Update to 2.10.2. [source](patches): Remove obsolete. Marius Bakke2017-12-19
* gnu: libjpeg-turbo: Update to 1.5.3.•••* gnu/packages/image.scm (libjpeg-turbo): Update to 1.5.3. Marius Bakke2017-12-18
* gnu: libsodium: Update to 1.0.16.•••* gnu/packages/crypto.scm (libsodium): Update to 1.0.16. Marius Bakke2017-12-18
* gnu: expect: Update to 5.45.3.•••* gnu/packages/tcl.scm (expect): Update to 5.45.3. Marius Bakke2017-12-18
* gnu: deutex: Update to 5.1.0.•••* gnu/packages/games.scm (deutex): Update to 5.1.0. Kei Kebreau2017-12-18
* gnu: emacspeak: Update to 47.0.•••* gnu/packages/emacs.scm (emacspeak): Update to 47.0. [source]: Remove snippet. [arguments]: Set SHELL environment variable. Kei Kebreau2017-12-18
* gnu: rsync: Patch CVE-2017-{16548,17433,17434}.•••* gnu/packages/rsync.scm (rsync)[source]: Add patches. [properties]: Mark CVE-2017-15994 as not relevant. * gnu/packages/patches/rsync-CVE-2017-16548.patch, gnu/packages/patches/rsync-CVE-2017-17433.patch, gnu/packages/patches/rsync-CVE-2017-17433-fix-tests.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt1.patch, gnu/packages/patches/rsync-CVE-2017-17434-pt2.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them. Efraim Flashner2017-12-18
* gnu: psm: Update home page URL.•••* gnu/packages/linux.scm (psm)[home-page]: Update. [source](uri): Use it. Ludovic Courtès2017-12-18
* gnu: Fix ambiguous 'zip' reference.•••* gnu/packages/photo.scm: Hide 'zip' from (srfi srfi-1). Ludovic Courtès2017-12-18
* gnu: claws-mail: Update to 3.16.0.•••* gnu/packages/mail.scm (claws-mail): Update to 3.16.0. Tobias Geerinckx-Rice2017-12-18
* gnu: r-seurat: Update to 2.1.0.•••* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.1.0. [propagated-inputs]: Add r-diffusionmap, r-dtw, r-ggjoy, r-hmisc, r-ica, r-mass, r-matrix, r-nmf, r-plotly, r-sdmtools, r-tidyr; remove r-plyr, r-rcppeigen, r-fastica. Ricardo Wurmus2017-12-18
* gnu: Add r-diffusionmap.•••* gnu/packages/graph.scm (r-diffusionmap): New variable. Ricardo Wurmus2017-12-18
* gnu: Add r-ggjoy.•••* gnu/packages/cran.scm (r-ggjoy): New variable. Ricardo Wurmus2017-12-18
* gnu: Add r-ggridges.•••* gnu/packages/cran.scm (r-ggridges): New variable. Ricardo Wurmus2017-12-18
* gnu: Add r-scatterplot3d.•••* gnu/packages/cran.scm (r-scatterplot3d): New variable. Ricardo Wurmus2017-12-18
* gnu: Add r-sdmtools.•••* gnu/packages/cran.scm (r-sdmtools): New variable. Ricardo Wurmus2017-12-18
* gnu: Add r-dtw.•••* gnu/packages/cran.scm (r-dtw): New variable. Ricardo Wurmus2017-12-18
* gnu: Add r-ica.•••* gnu/packages/cran.scm (r-ica): New variable. Ricardo Wurmus2017-12-18
* gnu: r-seurat: Fix ModularityOptimizer.jar.•••* gnu/packages/bioinformatics.scm (r-seurat)[arguments]: Include Main-Class attribute in manifest. Ricardo Wurmus2017-12-18
* gnu: qmidiarp: Update to 0.6.5.•••* gnu/packages/music.scm (qmidiarp): Update to 0.6.5. Ricardo Wurmus2017-12-18
* gnu: Add noise-repellent.•••* gnu/packages/audio.scm (noise-repellent): New variable. Ricardo Wurmus2017-12-18
* gnu: Add aj-snapshot.•••* gnu/packages/music.scm (aj-snapshot): New variable. Ricardo Wurmus2017-12-18
* gnu: Add jack-capture.•••* gnu/packages/music.scm (jack-capture): New variable. Ricardo Wurmus2017-12-18
* gnu: Add qjackrcd.•••* gnu/packages/audio.scm (qjackrcd): New variable. Ricardo Wurmus2017-12-18
* gnu: Add whysynth.•••* gnu/packages/music.scm (whysynth): New variable. Ricardo Wurmus2017-12-18
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