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* Merge branch 'master' into core-updatesTobias Geerinckx-Rice2017-10-25
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| * gnu: expat: Update replacement to 2.2.4 [security fixes].Tobias Geerinckx-Rice2017-10-25
| | | | | | | | | | | | | | | | | | See 'Changes' in the source distribution for more information about the fixed security issues. * gnu/packages/xml.scm (expat)[replacement]: Update to 2.2.4. (expat-2.2.2): Replace with... (expat-2.2.4): ...new variable.
| * gnu: tor: Update to 0.3.1.8.Tobias Geerinckx-Rice2017-10-25
| | | | | | | | * gnu/packages/tor.scm (tor): Update to 0.3.1.8.
| * gnu: sssd: Add missing word to description.Tobias Geerinckx-Rice2017-10-25
| | | | | | | | * gnu/packages/sssd.scm (sssd)[description]: Fix typo.
| * gnu: sssd: Update to 1.16.0.Tobias Geerinckx-Rice2017-10-25
| | | | | | | | * gnu/packages/sssd.scm (sssd): Update to 1.16.0.
| * gnu: ding-libs: Update to 0.6.1.Tobias Geerinckx-Rice2017-10-25
| | | | | | | | * gnu/packages/sssd.scm (ding-libs): Update to 0.6.1.
| * gnu: r-ff: Remove aarch64-linux from supported-systems.Efraim Flashner2017-10-25
| | | | | | | | * gnu/packages/cran.scm (r-ff)[supported-systems]: New field.
| * gnu: go@1.4: Limit supported systems.Efraim Flashner2017-10-25
| | | | | | | | | | | | * gnu/packages/golang.scm (go@1.4)[supported-systems]: New field, Limit supported systems to x86_64-linux, i686-linux and armhf-linux. (go@1.9)[supported-systems]: New field.
| * gnu: perl-moox-file-configdir: Fix source URL.Ricardo Wurmus2017-10-25
| | | | | | | | | | * gnu/packages/perl.scm (perl-moox-file-configdir)[source]: Fix typo in source URL.
| * gnu: Add r-forcats.Kyle Meyer2017-10-25
| | | | | | | | | | | | * gnu/packages/statistics.scm (r-forcats): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add sqlite-with-fts3.Ricardo Wurmus2017-10-25
| | | | | | | | | | | | * gnu/packages/databases.scm (sqlite-with-fts3): New variable. Co-authored-by: Pierre Langlois <pierre.langlois@gmx.com>
| * gnu: Add crypto++.Pierre Langlois2017-10-25
| | | | | | | | | | | | | | | | * gnu/packages/crypto.scm (crypto++): New variable. * gnu/packages/patches/crypto++-fix-dos-in-asn.1-decoders.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add libechonest.Pierre Langlois2017-10-25
| | | | | | | | | | | | * gnu/packages/music.scm (libechonest): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add qjson.Pierre Langlois2017-10-25
| | | | | | | | | | | | * gnu/packages/web.scm (qjson): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add parcimonie.Petter2017-10-25
| | | | | | | | | | | | * gnu/packages/gnupg.scm (parcimonie): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-browser-open.Petter2017-10-25
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-browser-open): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-b-keywords.Petter2017-10-25
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-b-keywords): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-carp-always.Petter2017-10-25
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-carp-always): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-net-dbus-glib.Petter2017-10-25
| | | | | | | | | | | | * gnu/packages/glib.scm (perl-net-dbus-glib): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-net-dbus.Petter2017-10-25
| | | | | | | | | | | | * gnu/packages/glib.scm (perl-net-dbus): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: dealii: Update to 8.5.1.Eric Bavier2017-10-24
| | | | | | | | | | | | Fixes compilation with boost@1.64.0. * gnu/packages/maths.scm (dealii): Update to 8.5.1.
| * gnu: p4est: Update to 2.0.Eric Bavier2017-10-24
| | | | | | | | * gnu/packages/maths.scm (p4est): Update to 2.0.
| * gnu: libhilbert: Remove package.Eric Bavier2017-10-24
| | | | | | | | | | | | | | This package's source and webpage has disappeared for some time, and upstream projects (e.g. libmesh) seem to be bundling it, so we remove it for now. * gnu/packages/maths.scm (libhilbert): Remove variable.
| * gnu: slepc: Update to 3.8.0.Eric Bavier2017-10-24
| | | | | | | | * gnu/packages/maths.scm (slepc): Update to 3.8.0.
| * gnu: petsc: Update to 3.8.0.Eric Bavier2017-10-24
| | | | | | | | | | * gnu/packages/maths.scm (petsc): Update to 3.8.0 [native-inputs]: Remove perl, which is no longer needed.
| * gnu: bwa: Update to 0.7.17.Ben Woodcroft2017-10-25
| | | | | | | | * gnu/packages/bioinformatics.scm (bwa): Update to 0.7.17.
| * gnu: bwa: Change source URL to GitHub.Ben Woodcroft2017-10-25
| | | | | | | | | | * gnu/packages/bioinformatics.scm (bwa)[source]: Change source URL to GitHub.
| * gnu: Add perl-moox-options.Petter2017-10-24
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-moox-options): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: perl-getopt-long-descriptive: Update to 0.100.Ricardo Wurmus2017-10-24
| | | | | | | | | | * gnu/packages/perl.scm (perl-getopt-long-descriptive): Update to 0.100. [native-inputs]: Add perl-cpan-meta-check.
| * gnu: Add perl-moox-configfromfile.Petter2017-10-24
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-moox-configfromfile): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-moox-file-configdir.Petter2017-10-24
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-moox-file-configdir): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-moox-cmd.Petter2017-10-24
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-moox-cmd): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: perl-list-moreutils: Update to 0.426.Ricardo Wurmus2017-10-24
| | | | | | | | | | | | | | | | * gnu/packages/perl.scm (perl-list-moreutils): Update to 0.426. [arguments]: Work around dotless @INC problem. [native-inputs]: Add perl-test-leaktrace; remove perl-inc-latest and perl-test-writevariants. [propagated-inputs]: Add perl-list-moreutils-xs.
| * gnu: Add perl-list-moreutils-xs.Ricardo Wurmus2017-10-24
| | | | | | | | * gnu/packages/perl.scm (perl-list-moreutils-xs): New variable.
| * gnu: Add perl-libintl-perl.Petter2017-10-24
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-libintl-perl): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-file-configdir.Petter2017-10-24
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-file-configdir): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-data-record.Petter2017-10-24
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-data-record): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-data-printer.Petter2017-10-24
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-data-printer): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-clone-pp.Petter2017-10-24
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-clone-pp): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: Add perl-data.Petter2017-10-24
| | | | | | | | | | | | * gnu/packages/perl.scm (perl-data): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| * gnu: gnurl: Update to 7.56.1.ng02017-10-24
| | | | | | | | | | | | * gnu/packages/gnunet.scm (gnurl): Update to 7.56.1. Signed-off-by: Leo Famulari <leo@famulari.name>
* | gnu: util-linux: Update to 2.31.Leo Famulari2017-10-24
| | | | | | | | * gnu/packages/linux.scm (util-linux): Update to 2.31.
* | gnu: glibc: Update to 2.26.Marius Bakke2017-10-24
| | | | | | | | | | | | | | | | | | * gnu/packages/base.scm (glibc/linux): Update to 2.26. [source](patches): Remove 'glibc-memchr-overflow-i686.patch', 'glibc-o-largefile.patch', 'glibc-vectorized-strcspn-guards.patch, 'glibc-CVE-2017-1000366-pt1.patch', 'glibc-CVE-2017-1000366-pt2.patch' and 'glibc-CVE-2017-1000366-pt3.patch'. (glibc-2.25): New public variable.
* | gnu: glibc: Incorporate grafted changes.Marius Bakke2017-10-24
| | | | | | | | | | | | * gnu/packages/base.scm (glibc/linux)[source](patches): Add 'glibc-CVE-2017-15670-15671.patch'. (glibc/fixed): Remove variable.
* | gnu: curl: Remove graft for 7.56.1.Marius Bakke2017-10-24
| | | | | | | | | | * gnu/packages/curl.scm (curl): Update to 7.56.1. (curl-7.56.1): Remove variable.
* | Merge branch 'master' into core-updatesMarius Bakke2017-10-24
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| * gnu: screen: Update to 4.6.2.Efraim Flashner2017-10-24
| | | | | | | | * gnu/packages/screen.scm (screen): Update to 4.6.2.
| * gnu: mupdf: Fix CVE-2017-{14685,14686,14687}.Leo Famulari2017-10-24
| | | | | | | | | | | | | | | | * gnu/packages/patches/mupdf-CVE-2017-14685.patch, gnu/packages/patches/mupdf-CVE-2017-14686.patch, gnu/packages/patches/mupdf-CVE-2017-14687.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/pdf.scm (mupdf)[source]: Use them.
| * gnu: icu4c: Fix CVE-2017-14952.Leo Famulari2017-10-24
| | | | | | | | | | | | | | * gnu/packages/patches/icu4c-CVE-2017-14952.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/icu4c.scm (icu4c)[replacement]: New field. (icu4c-fixed): New variable.
| * gnu: syncthing: Split into two outputs.Leo Famulari2017-10-24
| | | | | | | | | | | | * gnu/packages/syncthing.scm (syncthing)[outputs]: New field. [arguments]: Change the 'install' and 'install-docs' phases to install to the two outputs.
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