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* gnu: Switch to using the version-major procedure.Christopher Baines2017-12-11
| | | | | | | * gnu/packages/audio.scm (ardour)[arguments]: Switch to using version-major. (hmmer)[source]: Switch to using version-major. (pidgin)[native-search-paths]: Switch to using version-major. (r-minimal)[source]: Switch to using version-major.
* gnu: r-bigmemory: Update to 4.5.31.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31. [propagated-inputs]: Remove r-r-utils.
* gnu: r-cowplot: Update to 0.9.1.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1. [propagated-inputs]: Add r-scales.
* gnu: r-rcppprogress: Update to 0.4.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4. [propagated-inputs]: Add r-devtools.
* gnu: r-rmarkdown: Update to 1.8.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8. [propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
* gnu: r-batchjobs: Update to 1.7.Ricardo Wurmus2017-11-30
| | | | | | * gnu/packages/statistics.scm (r-batchjobs): Update to 1.7. [propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove r-fail and r-stringr.
* gnu: r-stringi: Update to 1.1.6.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
* gnu: r-devtools: Update to 1.13.4.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
* gnu: r-mclust: Update to 5.4.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-mclust): Update to 5.4.
* gnu: r-rcppeigen: Update to 0.3.3.3.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
* gnu: r-car: Update to 2.1-6.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-car): Update to 2.1-6.
* gnu: r-sn: Update to 1.5-1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
* gnu: r-openssl: Update to 0.9.9.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
* gnu: r-hms: Update to 0.4.0.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-hms): Update to 0.4.0. [propagated-inputs]: Add r-rlang and r-pkgconfig.
* gnu: Update r-matrix to 1.2-12.Roel Janssen2017-11-30
| | | | * gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
* gnu: Update r-cluster to 2.0.6.Roel Janssen2017-11-30
| | | | * gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
* gnu: Update r-minimal to 3.4.3.Roel Janssen2017-11-30
| | | | * gnu/packages/statistics.scm (r-minimal): Update to 3.4.3.
* gnu: Move date/time packages from python.scm to time.scm.Ricardo Wurmus2017-11-18
| | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-pytz, python2-pytz, python-dateutil, python2-dateutil, python-parsedatetime, python2-parsedatetime, python-tzlocal, python-isodate, python2-isodate, python-iso8601, python2-iso8601, python-monotonic, python2-monotonic, python-pyrfc3339, python2-pyrfc3339, python-arrow, python2-arrow, python-aniso8601, python2-aniso8601): Move from here... * gnu/packages/time.scm: ...to here. * gnu/packages/calendar.scm, gnu/packages/check.scm, gnu/packages/django.scm, gnu/packages/ebook.scm, gnu/packages/gnome.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/mail.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/rdf.scm, gnu/packages/statistics.scm, gnu/packages/tls.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm: Adjust accordingly.
* gnu: Remove duplicates from (gnu packages statistics).Ricardo Wurmus2017-11-18
| | | | | * gnu/packages/statistics.scm (r-cluster, r-codetools, r-kernsmooth): Remove duplicates.
* gnu: Move testing packages from python.scm to check.scm.Ricardo Wurmus2017-11-17
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-behave-web-api, python2-behave-web-api, python-mock, python2-mock, python-mock-2, python-nose, python2-nose, python-nose2, python2-nose2, python-unittest2, python2-unittest2, python-pytest, python2-pytest, python-pytest-3.0, python2-pytest-3.0, python-pytest-cov, python2-pytest-cov, python-pytest-runner, python2-pytest-runner, python-pytest-mock, python2-pytest-mock, python-pytest-xdist, python2-pytest-xdist, python-scripttest, python2-scripttest, python-testtools, python2-testtools, python-testscenarios, python2-testscenarios, python-testresources, python2-testresources, python-subunit, python2-subunit, python-fixtures, python2-fixtures, python-testrepository, python2-testrepository, python-coverage, python2-coverage, python-cov-core, python2-cov-core, python-testpath, python2-testpath, python-testlib, python2-testlib, python-pytest-cache, python2-pytest-cache, python-pytest-localserver, python-pytest-xprocess, python-pytest-subtesthack, python2-pytest-subtesthack, python-hypothesis, python2-hypothesis, python-lit, python2-lit, python-pytest-pep8, python2-pytest-pep8, python-pytest-flakes, python2-pytest-flakes, python2-coverage-test-runner, python-pylint, python2-pylint, python-paramunittest, python2-python-paramunittest, python-pytest-warnings, python2-pytest-warnings, python-pytest-capturelog, python2-pytest-capturelog, python-pytest-catchlog, python2-pytest-catchlog, python-nosexcover, python2-nosexcover, python-discover, python2-discover, behave, python-rednose, python2-rednose, python-nose-randomly, python2-nose-randomly, python-nose-timer, python2-nose-timer): Move from here... * gnu/packages/check.scm: ...to here. * gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/backup.scm, gnu/packages/bioinformatics.scm, gnu/packages/calendar.scm, gnu/packages/dav.scm, gnu/packages/django.scm, gnu/packages/freedesktop.scm, gnu/packages/haskell.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/ldc.scm, gnu/packages/libffi.scm, gnu/packages/mail.scm, gnu/packages/mpd.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/password-utils.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/rdf.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm: Adjust accordingly.
* gnu: Add r-directlabels.Kyle Meyer2017-11-09
| | | | | | * gnu/packages/statistics.scm (r-directlabels): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: r-prabclus: Update description.Ricardo Wurmus2017-11-07
| | | | * gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
* gnu: r-fdrtool: Update description.Ricardo Wurmus2017-11-07
| | | | * gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
* gnu: r-tidyselect: Update to 0.2.3.Ricardo Wurmus2017-11-07
| | | | * gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.3.
* gnu: r-lubridate: Update to 1.7.1.Ricardo Wurmus2017-11-07
| | | | | * gnu/packages/statistics.scm (r-lubridate): Update to 1.7.1. [propagated-inputs]: Add r-rcpp.
* gnu: r-preprocesscore: Update to 1.40.0.Ricardo Wurmus2017-11-07
| | | | * gnu/packages/statistics.scm (r-preprocesscore): Update to 1.40.0.
* gnu: r-r-utils: Update to 2.6.0.Ricardo Wurmus2017-11-07
| | | | * gnu/packages/statistics.scm (r-r-utils): Update to 2.6.0.
* gnu: r-openssl: Update to 0.9.8.Ricardo Wurmus2017-11-07
| | | | * gnu/packages/statistics.scm (r-openssl): Update to 0.9.8.
* gnu: r-rlang: Update to 0.1.4.Ricardo Wurmus2017-11-07
| | | | * gnu/packages/statistics.scm (r-rlang): Update to 0.1.4.
* gnu: r-withr: Update to 2.1.0.Ricardo Wurmus2017-11-03
| | | | | * gnu/packages/statistics.scm (r-withr): Update to 2.1.0. [propagated-inputs]: Add r-lattice.
* gnu: r-quantreg: Update to 5.34.Ricardo Wurmus2017-11-03
| | | | * gnu/packages/statistics.scm (r-quantreg): Update to 5.34.
* gnu: r-robustbase: Update to 0.92-8.Ricardo Wurmus2017-11-03
| | | | * gnu/packages/statistics.scm (r-robustbase): Update to 0.92-8.
* gnu: r-purrr: Update to 0.2.4.Ricardo Wurmus2017-11-03
| | | | * gnu/packages/statistics.scm (r-purrr): Update to 0.2.4.
* gnu: r-irlba: Update to 2.3.1.Ricardo Wurmus2017-11-03
| | | | * gnu/packages/statistics.scm (r-irlba): Update to 2.3.1.
* gnu: r-checkmate: Update to 1.8.5.Ricardo Wurmus2017-11-03
| | | | * gnu/packages/statistics.scm (r-checkmate): Update to 1.8.5.
* gnu: r-multitaper: Update to 1.0-14.Ricardo Wurmus2017-11-03
| | | | * gnu/packages/statistics.scm (r-multitaper): Update to 1.0-14.
* gnu: r-data-table: Update to 1.10.4-3.Ricardo Wurmus2017-11-03
| | | | * gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-3.
* gnu: r-pryr: Update to 0.1.3Ricardo Wurmus2017-11-03
| | | | * gnu/packages/statistics.scm (r-pryr): Update to 0.1.3.
* gnu: r-lazyeval: Update to 0.2.1.Ricardo Wurmus2017-11-03
| | | | * gnu/packages/statistics.scm (r-lazyeval): Update to 0.2.1.
* gnu: Add r-tgconfig.Ricardo Wurmus2017-10-30
| | | | * gnu/packages/statistics.scm (r-tgconfig): New variable.
* gnu: Add r-tgstat.Ricardo Wurmus2017-10-30
| | | | * gnu/packages/statistics.scm (r-tgstat): New variable.
* gnu: r-nloptr: Update package hash.Efraim Flashner2017-10-26
| | | | | | | The source was repacked and reuploaded without incrementing the version number. The difference was windows line endings on the windows files. * gnu/packages/statistics.scm (r-nloptr)[source]: Update package hash.
* gnu: Add r-forcats.Kyle Meyer2017-10-25
| | | | | | * gnu/packages/statistics.scm (r-forcats): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* Use HTTPS for bioconductor.org.Tobias Geerinckx-Rice2017-10-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * doc/guix.texi (Invoking guix import, Invoking guix refresh): Use HTTPS for bioconductor.org URLs. * gnu/packages/bioinformatics.scm (r-annotate, r-geneplotter, r-genefilter) (r-deseq2, r-dexseq, r-annotationforge, r-rbgl, r-gseabase, r-category) (r-gostats, r-shortread, r-biocgenerics, r-biocinstaller, r-biocviews) (r-biocstyle, r-bioccheck, r-s4vectors, r-iranges, r-genomeinfodbdata) (r-genomeinfodb, r-xvector, r-genomicranges, r-biobase, r-annotationdbi) (r-biomart, r-biocparallel, r-biostrings, r-rsamtools, r-delayedarray) (r-summarizedexperiment, r-genomicalignments, r-rtracklayer) (r-genomicfeatures, r-graph, r-topgo, r-bsgenome, r-impute, r-seqpattern) (r-seqlogo, r-motifrg, r-bamsignals, r-mutationalpatterns, r-tximport) (r-rhdf5, r-chipseq, r-sva, r-affy, r-vsn, r-mzid, r-msnid) (r-interactivedisplaybase, r-annotationhub)[home-page]: Likewise. * gnu/packages/bioinformatics.scm (r-txdb-hsapiens-ucsc-hg19-knowngene) (r-go-db, r-bsgenome-hsapiens-1000genomes-hs37d5, r-org-hs-eg-db) (r-org-ce-eg-db, r-org-dm-eg-db, r-org-mm-eg-db) (r-bsgenome-hsapiens-ucsc-hg19, r-bsgenome-mmusculus-ucsc-mm9) (r-bsgenome-mmusculus-ucsc-mm10, r-txdb-mmusculus-ucsc-mm10-knowngene) (r-bsgenome-celegans-ucsc-ce6, r-bsgenome-celegans-ucsc-ce10) (r-bsgenome-dmelanogaster-ucsc-dm3, r-copyhelper)[source, home-page]: Likewise. * gnu/packages/statistics.scm (r-rcurl)[source]: Likewise. * guix/build-system/r.scm (bioconductor-uri): Likewise. * guix/import/cran.scm (%cran-url, bioconductor-package?) (bioconductor-data-package?, bioconductor-experiment-package?): Likewise.
* gnu: r-tidyr: Update to 0.7.2.Ricardo Wurmus2017-10-17
| | | | * gnu/packages/statistics.scm (r-tidyr): Update to 0.7.2.
* gnu: r-tidyselect: Update to 0.2.2.Ricardo Wurmus2017-10-17
| | | | * gnu/packages/statistics.scm (r-tidyselect): Update to 0.2.2.
* gnu: r-rcpparmadillo: Update to 0.8.100.1.0.Ricardo Wurmus2017-10-17
| | | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.100.1.0. [native-inputs]: Add r-knitr.
* gnu: r-data-table: Update to 1.10.4-2.Ricardo Wurmus2017-10-17
| | | | * gnu/packages/statistics.scm (r-data-table): Update to 1.10.4-2.
* gnu: r-chron: Update to 2.3-51.Ricardo Wurmus2017-10-17
| | | | * gnu/packages/statistics.scm (r-chron): Update to 2.3-51.
* gnu: r-dplyr: Update to 0.7.4.Ricardo Wurmus2017-10-17
| | | | * gnu/packages/statistics.scm (r-dplyr): Update to 0.7.4.
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