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* gnu: r-chron: Update to 2.3-50.•••* gnu/packages/statistics.scm (r-chron): Update to 2.3-50. Ricardo Wurmus2017-04-06
* gnu: r-cluster: Update to 2.0.6.•••* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6. Ricardo Wurmus2017-04-06
* gnu: r-dbi: Update to 0.6-1.•••* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1. Ricardo Wurmus2017-04-06
* gnu: r-gdtools: Update to 0.1.4.•••* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4. Ricardo Wurmus2017-04-06
* gnu: r-stringr: Update to 1.2.0.•••* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0. Ricardo Wurmus2017-04-06
* gnu: r-stringi: Update to 1.1.3.•••* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3. Ricardo Wurmus2017-04-06
* gnu: r-rcpp: Update to 0.12.10.•••* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10. Ricardo Wurmus2017-04-06
* gnu: r-digest: Update to 0.6.12.•••* gnu/packages/statistics.scm (r-digest): Update to 0.6.12. Ricardo Wurmus2017-04-06
* gnu: r-survival: Update to 2.41-3.•••* gnu/packages/statistics.scm (r-survival): Update to 2.41-3. Ricardo Wurmus2017-04-06
* gnu: r-mgcv: Update to 1.8-17.•••* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17. Ricardo Wurmus2017-04-06
* gnu: r-matrix: Update to 1.2-8.•••* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8. Ricardo Wurmus2017-04-06
* gnu: r-lattice: Update to 0.20-35.•••* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35. Ricardo Wurmus2017-04-06
* gnu: r-rprojroot: Update to 1.2.•••* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2. Ricardo Wurmus2017-04-06
* gnu: r-tidyr: Update to 0.6.1.•••* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1. [propagated-inputs]: Add "r-tibble". Ricardo Wurmus2017-04-06
* gnu: r-roxygen2: Update to 6.0.1.•••* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1. [propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2". Ricardo Wurmus2017-04-06
* gnu: Add r-commonmark.•••* gnu/packages/statistics.scm (r-commonmark): New variable. Ricardo Wurmus2017-04-06
* gnu: Add r-desc.•••* gnu/packages/statistics.scm (r-desc): New variable. Ricardo Wurmus2017-04-06
* gnu: r-readr: Update to 1.1.0.•••* gnu/packages/statistics.scm (r-readr): Update to 1.1.0. [propagated-inputs]: Remove "r-curl". Ricardo Wurmus2017-04-06
* gnu: r-tibble: Update to 1.3.0.•••* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0. [propagated-inputs]: Remove "r-assertthat". Ricardo Wurmus2017-04-06
* gnu: Use HTTPS URLs for GitHub home-pages.•••* gnu/packages/bioinformatics.scm, gnu/packages/emacs.scm, gnu/packages/haskell.scm, gnu/packages/libffi.scm, gnu/packages/lisp.scm, gnu/packages/ocaml.scm, gnu/packages/openstack.scm, gnu/packages/python.scm, gnu/packages/ruby.scm, gnu/packages/shells.scm, gnu/packages/statistics.scm, gnu/packages/xdisorg.scm: Use HTTPS URLs for all packages with a home-page on GitHub. Leo Famulari2017-04-02
* Merge branch 'master' into core-updates•••Most conflicts are from 6fd52309b8f52c9bb59fccffac53e029ce94b698. Marius Bakke2017-03-30
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| * gnu: Use HTTPS for almost all gnu.org HOME-PAGEs.•••All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS. Tobias Geerinckx-Rice2017-03-30
* | Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2017-03-22
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| * gnu: Add r-cairo.•••* gnu/packages/statistics.scm (r-cairo): New variable. Ricardo Wurmus2017-03-20
* | Merge branch 'master' into core-updatesMark H Weaver2017-03-19
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| * gnu: r-minimal: Fix remaining reproducibility problems.•••Fixes <https://bugs.gnu.org/25598>. * gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining reproducibility fixes to "build-reproducibly" phase. Ricardo Wurmus2017-03-17
| * gnu: r: Rename to r-minimal.•••* gnu/packages/statistics.scm (r): Rename to... (r-minimal): ...this new variable. (r-with-recommended-packages): Rename to... (r): ...this. * guix/build-system/r.scm (default-r): Reference r-minimal. * gnu/packages/emacs.scm (emacs-ess)[inputs], gnu/packages/machine-learning.scm (shogun)[inputs], gnu/packages/python.scm (python-rpy2)[inputs], gnu/packages/bioinformatics.scm (ribotaper)[inputs], (couger)[propagated-inputs], (roary)[inputs], (rsem)[inputs], (rcas-web)[inputs]: Change "r" to "r-minimal". Ricardo Wurmus2017-03-17
| * gnu: Add r-with-recommended-packages.•••* gnu/packages/statistics.scm (r-with-recommended-packages): New variable. Ricardo Wurmus2017-03-17
| * gnu: r: Do not build recommended packages.•••* gnu/packages/statistics.scm (r)[arguments]: Rename phase "build-recommended-packages-reproducibly" to "build-reproducibly"; add configure flag "--without-recommended-packages". * guix/import/cran.scm (default-r-packages): Remove recommended packages. * gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival. * gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice and r-nlme. (r-vegan)[propagated-inputs]: Add r-mass. (r-genefilter)[propagated-inputs]: Add r-survival. (r-grohmm)[propagated-inputs]: Add r-mass. (r-bioccheck)[propagated-inputs]: Add r-codetools. (r-summarizedexperiment)[propagated-inputs]: Add r-matrix. (r-topgo)[propagated-inputs]: Add r-lattice. (r-sva)[propagated-inputs]: Add r-mgcv. (r-raremetals2)[propagated-inputs]: Add r-mass. (r-vsn)[propagated-inputs]: Add r-lattice. (r-pcamethods)[propagated-inputs]: Add r-mass. * gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass. (r-locfit)[propagated-inputs]: Add r-lattice. (r-coda)[propagated-inputs]: Add r-lattice. (r-irlba)[propagated-inputs]: Add r-matrix. (r-glmnet)[propagated-inputs]: Add r-matrix. (r-e1071)[propagated-inputs]: Add r-class. (r-spams)[propagated-inputs]: Add r-lattice and r-matrix. (r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and r-rpart. (r-zoo)[propagated-inputs]: Add r-lattice. (r-mixtools)[propagated-inputs]: Add r-boot and r-mass. (r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet. (r-prabclus)[propagated-inputs]: Add r-mass. (r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass. (r-rcppeigen)[propagated-inputs]: Add r-matrix. (r-matrixmodels)[propagated-inputs]: Add r-matrix. (r-lme4)[propagated-inputs]: Add r-mass and r-nlme. (r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix. (r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet. (r-tclust)[propagated-inputs]: Add r-cluster. Ricardo Wurmus2017-03-17
| * gnu: r-survival: Move to set of recommended R packages.•••* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R packages. Ricardo Wurmus2017-03-17
| * gnu: Add r-spatial.•••* gnu/packages/statistics.scm (r-spatial): New variable. Ricardo Wurmus2017-03-17
| * gnu: r-rpart: Move to the set of recommended packages.•••* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended packages. Ricardo Wurmus2017-03-17
| * gnu: r-nnet: Move to set of recommended R packages.•••* gnu/packages/machine-learning.scm (r-nnet): Move from here... * gnu/packages/statistics.scm (r-nnet): ...to here because the other recommended R packages are here. Ricardo Wurmus2017-03-17
| * gnu: r-mgcv: Move to set of recommended R packages.•••* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R packages. Ricardo Wurmus2017-03-17
| * gnu: Add r-nlme.•••* gnu/packages/statistics.scm (r-nlme): New variable. Ricardo Wurmus2017-03-17
| * gnu: r-matrix: Move to set of recommended R packages.•••* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R packages. Ricardo Wurmus2017-03-17
| * gnu: r-lattice: Move to other recommended R packages.•••* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R packages. Ricardo Wurmus2017-03-17
| * gnu: Add r-kernsmooth.•••* gnu/packages/statistics.scm (r-kernsmooth): New variable. Ricardo Wurmus2017-03-17
| * gnu: Add r-foreign.•••* gnu/packages/statistics.scm (r-foreign): New variable. Ricardo Wurmus2017-03-17
| * gnu: Add r-codetools.•••* gnu/packages/statistics.scm (r-codetools): New variable. Ricardo Wurmus2017-03-17
| * gnu: Add r-cluster.•••* gnu/packages/statistics.scm (r-cluster): New variable. Ricardo Wurmus2017-03-17
| * gnu: Add r-class.•••* gnu/packages/statistics.scm (r-class): New variable. Ricardo Wurmus2017-03-17
| * gnu: Add r-mass.•••* gnu/packages/statistics.scm (r-mass): New variable. Ricardo Wurmus2017-03-17
| * gnu: Add r-boot.•••* gnu/packages/statistics.scm (r-boot): New variable. Ricardo Wurmus2017-03-17
* | Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2017-03-13
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| * gnu: r-hexbin: Update to 1.27.1-1.•••The package tarball was updated in place, resulting in a change in the hash value. We decided to bump the version to 1.27.1-1 instead of keeping the version at upstream's 1.27.1. * gnu/packages/statistics.scm (r-hexbin): Update to 1.27.1-1. pjotrp2017-03-13
| * gnu: Add r-tsne.•••* gnu/packages/bioinformatics.scm (r-tsne): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com> Raoul Jean Pierre Bonnal2017-03-12
| * gnu: Add r-ranger.•••* gnu/packages/statistics.scm (r-ranger): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com> Raoul Jean Pierre Bonnal2017-03-12
| * gnu: Add r-tclust.•••* gnu/packages/statistics.scm (r-tclust): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com> Raoul Jean Pierre Bonnal2017-03-12
| * gnu: Add r-sn.•••* gnu/packages/statistics.scm (r-sn): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com> Raoul Jean Pierre Bonnal2017-03-12
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