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* Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2017-11-01
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| * gnu: snakemake: Update to 4.2.0.Kyle Meyer2017-10-27
| | | | | | | | | | | | | | | | * gnu/packages/python.scm (snakemake): Update to 4.2.0. [propagated-inputs]: Add python-appdirs, python-configargparse, python-pyyaml, and python-ratelimiter, which are dependencies as of Snakemake 4.1.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: Add python-ratelimiter.Kyle Meyer2017-10-27
| | | | | | | | | | | | | | * gnu/packages/python.scm (python-ratelimiter, python2-ratelimiter): New variables. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: python-configargparse: Update to 0.12.0.Kyle Meyer2017-10-27
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-configargparse, python2-configargparse): Update to 0.12.0. [arguments]: Enable tests. [native-inputs]: Add python-pyyaml, which is an optional dependency but required to run the tests. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: Add python-coloredlogs.ng02017-10-25
| | | | | | | | | | | | | | * gnu/packages/python.scm (python-coloredlogs, python2-coloredlogs): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add python-verboselogs.ng02017-10-25
| | | | | | | | | | | | | | * gnu/packages/python.scm (python-verboselogs, python2-verboselogs): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add python-capturer.ng02017-10-25
| | | | | | | | | | | | | | * gnu/packages/python.scm (python-capturer, python2-capturer): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add python-humanfriendly.ng02017-10-25
| | | | | | | | | | | | | | * gnu/packages/python.scm (python-humanfriendly, python2-humanfriendly): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | Merge remote-tracking branch 'origin/python-updates' into core-updatesEfraim Flashner2017-10-26
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| * | gnu: python@3.6: Fix building on aarch64.Efraim Flashner2017-10-20
| | | | | | | | | | | | * gnu/packages/python.scm (python@3.6)[source]: Remove another test.
| * | gnu: python-coverage: Update to 4.4.1.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python-coverage): Update to 4.4.1.
| * | gnu: python-unittest2: Update to 1.1.0.Marius Bakke2017-10-19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-unittest2): Update to 1.1.0. [source]: Use PYPI-URI. Add two patches. [arguments]: Add phase to run tests. [propagated-inputs]: Add PYTHON-SIX and PYTHON-TRACEBACK2. (python2-unittest2): Use 'package-with-python2'. * gnu/packages/patches/python2-unittest2-remove-argparse.patch: Rename to ... * gnu/packages/patches/python2-unittest2-remove-argparse.patch: ... this. * gnu/packages/patches/python-unittest2-python3-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
| * | gnu: python-jinja2: Remove workaround for < Python 3.6.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python-jinja2)[arguments]: Remove field.
| * | gnu: Remove python-mock@1.Marius Bakke2017-10-19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-mock): Update to 2.0.0. [native-inputs]: Add PYTHON-UNITTEST2. [propagated-inputs]: Add PYTHON-PBR and PYTHON-SIX. [arguments]: Override 'check' phase. [properties]: Declare python2 variant. (python2-mock)[propagated-inputs]: Add PYTHON2-FUNCTOOLS32 and PYTHON2-FUNCSIGS. (python-mock-2): Remove variable. * gnu/packages/python.scm (python-flake8)[native-inputs]: Adjust accordingly. * gnu/packages/tls.scm (python-acme, certbot)[native-inputs]: Likewise.
| * | gnu: Add python2-funcsigs.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python2-funcsigs): New variable.
| * | gnu: python-flake8: Update to 3.4.1.Marius Bakke2017-10-19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-flake8): Update to 3.4.1. [source]: Remove obsolete snippet. [arguments]: Override 'check' phase. [propagated-inputs]: Remove PYTHON-PEP8. Add PYTHON-PYCODESTYLE and PYTHON-SETUPTOOLS. [native-inputs]: Change PYTHON-MOCK to PYTHON-MOCK-2. Remove PYTHON-NOSE. Add PYTHON-PYTEST-BOOTSTRAP and PYTHON-PYTEST-RUNNER. [properties]: Declare python2 variant. * gnu/packages/python.scm (python-flake8)[propagated-inputs]: Add PYTHON2-ENUM and PYTHON2-CONFIGPARSER.
| * | gnu: Add python2-enum.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python2-enum): New variable.
| * | gnu: Fix pytest dependency cycle.Marius Bakke2017-10-19
| | | | | | | | | | | | | | | * gnu/packages/python.scm (python-traceback2, python-linecache2)[native-inputs]: Use PYTHON-PBR-MINIMAL instead of PYTHON-PBR.
| * | gnu: python-mock@2: Add dependency on python-six.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python-mock-2)[propagated-inputs]: Add PYTHON-SIX.
| * | gnu: python-mccabe: Update to 0.6.1.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python-mccabe): Update to 0.6.1.
| * | gnu: python-pyflakes: Update to 1.5.0.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python-pyflakes): Update to 1.5.0.
| * | gnu: python-pytest: Update to 3.2.3.Marius Bakke2017-10-19
| | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-pytest): Update to 3.2.3. [native-inputs]: Add PYTHON-SETUPTOOLS-SCM. (python-pytest)[native-inputs]: Likewise. (python2-pytest)[native-inputs]: Remove PYTHON2-ENUM34.
| * | gnu: python-setuptools-scm: Update to 1.15.6.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python-setuptools-scm): Update to 1.15.6.
| * | gnu: python-pytest: Add a minimal variant for bootstrapping.Marius Bakke2017-10-19
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-pytest-bootstrap, python2-pytest-bootstrap): New variables. (python-six, python-hypothesis, python-pytest-runner, python-mccabe)[native-inputs]: Use PYTHON-PYTEST-BOOTSTRAP instead of PYTHON-PYTEST.
| * | gnu: Remove python-pytest@2.Marius Bakke2017-10-19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-pytest): Update to 3.0.7. [source]: Move substitution to ... [arguments]: ... here. Incorporate phase from pytest-3.0. [native-inputs]: Add PYTHON-HYPOTHESIS. (python-pytest-3.0): Remove variable. (python2-pytest-3.0): Rename to ... (python2-pytest): ... this. [native-inputs]: Add PYTHON2-ENUM34. * gnu/packages/backup.scm (borg)[native-inputs]: Replace PYTHON-PYTEST-3.0 with PYTHON-PYTEST. * gnu/packages/calendar.scm (khal): Likewise. * gnu/packages/databases.scm (python-orator): Likewise. * gnu/packages/python.scm (python-sphinx-1.6, python-sphinx-1.5.3, python-pexpect, python-cryptography, python-pyopenssl, python-pytest-warnings, python-pytest-capturelog, python-pytest-catchlog, python-marshmallow, python-apispec, python-flasgger, python-pyjwt, python-grako, python-honcho): Likewise. * gnu/packages/web.scm (python-internetarchive): Likewise.
| * | gnu: python-six: Update to 1.11.0.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python-six): Update to 1.11.0.
| * | gnu: python-six: Really enable tests.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python-six)[arguments]: Override 'check' phase.
| * | gnu: python-py: Update to 1.4.34.Marius Bakke2017-10-19
| | | | | | | | | | | | * gnu/packages/python.scm (python-py, python2-py): Update to 1.4.34.
| * | gnu: python@3: Update to 3.6.3.Marius Bakke2017-10-19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/python-3.5-fix-tests.patch: Rename to ... * gnu/packages/patches/python-3-fix-tests.patch: ... this. Adjust and disable more tests. * gnu/packages/patches/python-3.5-getentropy-on-old-kernels.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python.scm (python-2.7)[argument]: Patch '/bin/sh' in one more file. (python-3.5): Rename to ... (python-3.6): ... this. Update to 3.6.3. [source](patches): Remove obsolete patch, adjust to patch rename. (python-3): Use PYTHON-3.6.
| * | gnu: python@2: Update to 2.7.14.Marius Bakke2017-10-19
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-2.7): Update to 2.7.14. [source]: Add patch to skip two new tests. Delete upstreamed patch. * gnu/packages/patches/python-2.7-adjust-tests.patch: New file. * gnu/packages/patches/python-2.7-getentropy-on-old-kernels.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* | | Merge branch 'master' into core-updatesMarius Bakke2017-10-24
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| * | gnu: python-docutils: Update to 0.14.Leo Famulari2017-10-24
| | | | | | | | | | | | * gnu/packages/python.scm (python-docutils, python2-docutils): Update to 0.14.
| * | gnu: python-graphene: Disable tests.Tobias Geerinckx-Rice2017-10-23
| | | | | | | | | | | | | | | * gnu/packages/python.scm (python-graphene)[native-inputs]: Remove. [arguments]: Disable #:tests.
| * | gnu: python-chardet: Fix PyPi download location.Marius Bakke2017-10-22
| | | | | | | | | | | | | | | | | | This is a followup to a54cb3ce1f114ee1bc26371d9bc4abb0e04001ef. * gnu/packages/python.scm (python-chardet)[source](uri): Use PYPI-URI.
* | | Merge branch 'master' into core-updatesMarius Bakke2017-10-22
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| * | gnu: python-chardet: Update to 3.0.4.Cyril Roelandt2017-10-22
| | | | | | | | | | | | * gnu/packages/python.scm (python-chardet, python2-chardet): Update to 3.0.4.
| * | gnu: python2-hypothesis: fix propagated inputs.Cyril Roelandt2017-10-22
| | | | | | | | | | | | | | | * gnu/packages/python.scm (python2-hypothesis)[propagated-inputs]: Add python2-enum34, which was incorrectly listed among the native inputs.
| * | gnu: python-hy: Update to 0.13.0.Ricardo Wurmus2017-10-19
| |/ | | | | | | * gnu/packages/python.scm (python-hy): Update to 0.13.0.
| * gnu: Add python2-py2neo.Roel Janssen2017-10-17
| | | | | | | | * gnu/packages/python.scm (python2-py2neo): New variable.
| * gnu: Add python2-neo4j-driver.Roel Janssen2017-10-17
| | | | | | | | * gnu/packages/python.scm (python2-neo4j-driver): New variable.
* | Merge 'master' into core-updatesThomas Danckaert2017-10-16
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| * gnu: python-cffi: Move to libffi.scmEfraim Flashner2017-10-15
| | | | | | | | | | | | | | * gnu/packages/python.scm (python-cffi): Move from here ... * gnu/packages/libffi.scm: ... to here. * gnu/packages/crypto.scm, gnu/packages/password-utils.scm: Adjust module imports.
| * gnu: python-cffi: Update to 1.11.2.Efraim Flashner2017-10-15
| | | | | | | | | | * gnu/packages/python.scm (python-cffi): Update to 1.11.2. [home-page]: Use 'https'.
| * gnu: python-cffi: Disable test that fails on aarch64.Efraim Flashner2017-10-15
| | | | | | | | | | * gnu/packages/python.cm (python-cffi)[arguments]: Disable test that is known to fail on aarch64.
| * gnu: Add python-pyqrcode.ng02017-10-14
| | | | | | | | | | | | * gnu/packages/python.scm (python-pyqrcode): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: python-fonttools: Update to 3.15.1.ng02017-10-14
| | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-fonttools): Update to 3.15.1. (source)[uri]: Use 'pypi-uri'. (native-inputs): Add unzip. Signed-off-by: Christopher Baines <mail@cbaines.net>
| * gnu: python-psycopg2: Update to 2.7.3.1.Efraim Flashner2017-10-13
| | | | | | | | | | * gnu/packages/python.scm (python-psycopg2): Update to 2.7.3.1. [inputs]: Replace postgresql@9.6 with postgresql.
| * gnu: python-psycopg2: Use postgresql@9.6.Efraim Flashner2017-10-12
| | | | | | | | | | * gnu/packages/python.scm (python-psycopg2)[inputs]: Replace postgresql with postgresql@9.6.
| * gnu: Add python-jupyter-console as input to python-ipython.Christopher Baines2017-10-12
| | | | | | | | | | | | | | | | | | | | | | | | This fixes running ipython console and ipython3 console, as the jupyter_console package is missing. As python-ipython is an input to python-jupyter-console, use a modified version of the package which doesn't have this input. * gnu/packages/python.scm (python-jupyter-console-minimal): New variable. (python-ipython)[propagated-inputs]: Replace python-jupyter-console with python-jupyter-console-minimal.
| * gnu: python-rpy2: Ignore test results.Ricardo Wurmus2017-10-11
| | | | | | | | * gnu/packages/python.scm (python-rpy2)[arguments]: Ignore test failures.
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