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* gnu: python-slepc4py: Update to 3.11.0.Paul Garlick2020-01-14
| | | | * gnu/packages/maths.scm (python-slepc4py): Update to 3.11.0.
* gnu: python-petsc4py: Update to 3.11.0.Paul Garlick2020-01-14
| | | | * gnu/packages/maths.scm (python-petsc4py): Update to 3.11.0.
* gnu: hdf5@1.10: Update to 1.10.6.Tobias Geerinckx-Rice2020-01-10
| | | | * gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.6.
* gnu: lapack: Update to 3.9.0.Konrad Hinsen2020-01-07
| | | | | | * gnu/packages/maths.scm (lapack): Update to 3.9.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hdf5@1.10: Update to 1.10.5.Ludovic Courtès2019-12-13
| | | | | | | * gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: Add lrslib.Andreas Enge2019-12-06
| | | | * gnu/packages/maths.scm (lrslib): New variable.
* Merge branch 'staging'Marius Bakke2019-12-04
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| * Merge branch 'master' into stagingMarius Bakke2019-11-28
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| * \ Merge branch 'master' into stagingMarius Bakke2019-11-21
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| * \ \ Merge branch 'master' into stagingMarius Bakke2019-10-21
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| * \ \ \ Merge branch 'master' into stagingMarius Bakke2019-10-18
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| * \ \ \ \ Merge branch 'master' into stagingMarius Bakke2019-10-13
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| * | | | | | gnu: OpenBLAS: Update to 0.3.7.Marius Bakke2019-10-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.3.7.
| * | | | | | gnu: OpenBLAS: Incorporate grafted changes.Marius Bakke2019-10-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas)[replacement]: Remove. [arguments]: Add NUM_THREADS in #:make-flags. (openblas/fixed-num-threads): Remove variable.
* | | | | | | gnu: z3: Update to 4.8.7.Tobias Geerinckx-Rice2019-12-01
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (z3): Update to 4.8.7.
* | | | | | | gnu: nauty: Update to 2.6r12.Tobias Geerinckx-Rice2019-12-01
| |_|_|_|_|/ |/| | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (nauty): Update to 2.6r12.
* | | | | | gnu: Remove obsolete import of R build system module.Ricardo Wurmus2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm: Remove import of (guix build-system r).
* | | | | | gnu: r-subplex: Move to (gnu packages cran).zimoun2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-subplex): Move from here... * gnu/packages/cran.scm (r-subplex): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* | | | | | gnu: r-pracma: Move to (gnu packages cran).zimoun2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-pracma): Move from here... * gnu/packages/cran.scm (r-pracma): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* | | | | | gnu: r-desolve: Move to (gnu packages cran).zimoun2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-desolve): Move from here... * gnu/packages/cran.scm (r-desolve): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* | | | | | gnu: r-quadprog: Move to (gnu packages cran).zimoun2019-11-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-quadprog): Move from here... * gnu/packages/cran.scm (r-quadprog): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* | | | | | gnu: wxmaxima: Update to 19.11.1.Kei Kebreau2019-11-23
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 19.11.1.
* | | | | | gnu: r-quadprog: Update to 1.5-8.Tobias Geerinckx-Rice2019-11-23
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-quadprog): Update to 1.5-8.
* | | | | | gnu: r-desolve: Update to 1.25.Tobias Geerinckx-Rice2019-11-23
| |_|_|_|/ |/| | | | | | | | | | | | | | * gnu/packages/maths.scm (r-desolve): Update to 1.25.
* | | | | gnu: Add minisat.Robert Smith2019-11-19
| |_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/minisat-friend-declaration.patch: New file. * gnu/packages/patches/minisat-install.patch: New file. * gnu/local.mk (dist_patch_DATA): Add both files above. * gnu/packages/maths.scm (minisat): New exported variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* | | | gnu: vc: Update to 1.4.1.Marius Bakke2019-10-20
| |_|/ |/| | | | | | | | | | | | | | * gnu/packages/maths.scm (vc): Update to 1.4.1. [native-inputs]: Add VIRTEST and a test data origin. [arguments]: Add phase to copy test data.
* | | gnu: mumps: Build and install shared libraries.Maurice Brémond2019-10-14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/mumps-shared-libseq.patch, gnu/packages/patches/mumps-shared-mumps.patch, gnu/packages/patches/mumps-shared-pord.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (mumps)[source](patches): Add them. [arguments]: In 'configure' phase, adjust "Makefile.inc" for shared library support. In 'install' phase, install libmpiseq.so when it exists. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* | | gnu: mumps: Update to 5.2.1.Maurice Brémond2019-10-14
| |/ |/| | | | | | | | | * gnu/packages/maths.scm (mumps): Update to 5.2.1. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* | gnu: mcrl2: Update source url.Jan Nieuwenhuizen2019-10-08
|/ | | | * gnu/packages/maths.scm (mcrl2): Update source url.
* Merge branch 'core-updates'Ludovic Courtès2019-10-08
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| * Merge branch 'master' into core-updatesLudovic Courtès2019-10-01
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| * \ Merge branch 'master' into core-updatesMarius Bakke2019-09-27
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| * \ \ Merge branch 'master' into core-updatesLudovic Courtès2019-09-24
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| * \ \ \ Merge branch 'master' into core-updatesLudovic Courtès2019-09-17
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| * \ \ \ \ Merge branch 'master' into core-updatesMark H Weaver2019-09-06
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| * | | | | | gnu: hdf-eos2: Add libtirpc input.Marius Bakke2019-09-03
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (hdf-eos2)[inputs]: Add LIBTIRPC.
| * | | | | | gnu: hdf4: Build with libtirpc.Marius Bakke2019-09-03
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/hdf4-tirpc.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (hdf4)[source](patches): Use it. [inputs]: Add LIBTIRPC. [arguments]: Adjust #:configure-flags accordingly.
| * | | | | | Merge branch 'master' into core-updatesMark H Weaver2019-08-29
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| * \ \ \ \ \ \ Merge branch 'master' into core-updatesMark H Weaver2019-08-22
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| * \ \ \ \ \ \ \ Merge branch 'master' into core-updatesMarius Bakke2019-08-13
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| * \ \ \ \ \ \ \ \ Merge branch 'master' into core-updatesLudovic Courtès2019-07-17
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| * | | | | | | | | | gnu: Adjust uses of C{,PLUS}_INCLUDE_PATH for GCC 7.Marius Bakke2019-07-14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | These variables are no longer set in the build environment by default. GCC still respects these search paths and treats them as "system headers" so we can continue to use them, just not expect them to be available. * gnu/packages/mpi.scm (openmpi)[arguments]: Do not attempt to read from C_INCLUDE_PATH, nor CPLUS_INCLUDE_PATH. * gnu/packages/games.scm (kiki)[arguments]: Likewise. * gnu/packages/networking.scm (hcxtools)[arguments]: Likewise. * gnu/packages/synergy.scm (synergy)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (gemma, sailfish)[arguments]: Likewise. * gnu/packages/maths.scm (dune-alugrid)[arguments]: Likewise.
| * | | | | | | | | | Merge branch 'staging' into core-updatesMarius Bakke2019-07-02
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| * \ \ \ \ \ \ \ \ \ \ Merge branch 'master' into core-updatesLudovic Courtès2019-06-27
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| * \ \ \ \ \ \ \ \ \ \ \ Merge branch 'staging' into core-updatesMarius Bakke2019-06-20
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| * \ \ \ \ \ \ \ \ \ \ \ \ Merge branch 'master' into core-updatesLudovic Courtès2019-06-13
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| * \ \ \ \ \ \ \ \ \ \ \ \ \ Merge branch 'staging' into core-updatesMarius Bakke2019-05-25
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| * | | | | | | | | | | | | | | gnu: OpenBLAS: Update to 0.3.6.Marius Bakke2019-05-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.3.6.
* | | | | | | | | | | | | | | | gnu: maxflow: Use HTTPS home page.Tobias Geerinckx-Rice2019-10-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (maxflow)[home-page]: Use HTTPS.
* | | | | | | | | | | | | | | | gnu: maxflow: Correct version to 3.0.5.Tobias Geerinckx-Rice2019-10-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This won't be picked up by ‘guix package -u’, but the code is identical anyway. By changing this now, fewer installations will fail to upgrade at all if upstream ever release a new <3.4. * gnu/packages/maths.scm (maxflow)[version]: Change to 3.0.5. [source]: Use version tag instead of raw matching commit.
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