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* gnu: arpack-ng: Update to 3.5.0; use 3.3.0 for julia.Ludovic Courtès2018-03-12
| | | | | | | | | Partly fixes <https://bugs.gnu.org/30282>. * gnu/packages/maths.scm (arpack-ng): Update to 3.5.0. [native-inputs]: New field. (arpack-ng-3.3.0): New variable. * gnu/packages/julia.scm (julia)[inputs]: Use ARPACK-NG-3.3.0.
* gnu: hdf5: Do not record the build-time kernel version.Ricardo Wurmus2018-03-09
| | | | | * gnu/packages/maths.scm (hdf5)[arguments]: Patch libhdf5.settings to prevent the kernel version on the build node from affecting the output.
* gnu: dionysus: Update to 1.4.0.Efraim Flashner2018-02-28
| | | | * gnu/packages/maths.scm (dionysus): Update to 1.4.0.
* gnu: wxmaxima: Update to 18.02.0.Kei Kebreau2018-02-24
| | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 18.02.0. [source]: Add patch. [build-system]: Use the cmake-build-system. [native-inputs]: Remove autoconf and automake. [arguments]: Disable tests, remove 'autoconf' phase. * gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: vc: Update to 1.3.3.Leo Famulari2018-02-23
| | | | * gnu/packages/maths.scm (vc): Update to 1.3.3.
* gnu: lpsolve: Update to 5.5.2.5.Tobias Geerinckx-Rice2018-02-21
| | | | * gnu/packages/maths.scm (lpsolve): Update to 5.5.2.5.
* gnu: lpsolve: Update phase style.Tobias Geerinckx-Rice2018-02-21
| | | | | * gnu/packages/maths.scm (lpsolve)[arguments]: Use INVOKE and INSTALL-FILE, and end phases with #t.
* Merge branch 'master' into core-updatesRicardo Wurmus2018-02-18
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| * gnu: glpk: Update to 4.65.Marius Bakke2018-02-16
| | | | | | | | * gnu/packages/maths.scm (glpk): Update to 4.65.
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-13
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| * gnu: r-pracma: Update to 2.1.4.Ricardo Wurmus2018-02-13
| | | | | | | | * gnu/packages/maths.scm (r-pracma): Update to 2.1.4.
| * gnu: hdf5: Build with -fPIC.Ricardo Wurmus2018-02-12
| | | | | | | | * gnu/packages/maths.scm (hdf5)[arguments]: Add -fPIC to CFLAGS and CXXFLAGS.
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-09
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| * gnu: mcrl2: Fix typo in synopsis.Tobias Geerinckx-Rice2018-02-08
| | | | | | | | | | * gnu/packages/maths.scm (mcrl2)[synopsis]: Fix typo. [description]: Use @dfn.
| * gnu: Add mcrl2.Jan Nieuwenhuizen2018-02-08
| | | | | | | | * gnu/packages/maths.scm (mcrl2): New variable.
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-03
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| * gnu: slepc: Apply invoke to configure flags.Eric Bavier2018-02-02
| | | | | | | | | | | | | | Follow-up to 94a1eb96d32fcce97ee5d9440ecffe22f7555cd5 * gnu/packages/maths.scm (slepc)[arguments]: Use 'apply' since 'flags' is a list of configure arguments.
| * gnu: Add Elemental.Eric Bavier2018-02-02
| | | | | | | | * gnu/packages/maths.scm (elemental): New variable.
* | Merge branch 'master' into core-updatesMarius Bakke2018-02-01
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| * gnu: slepc: Update to 3.8.2.Tobias Geerinckx-Rice2018-01-29
| | | | | | | | * gnu/packages/maths.scm (slepc): Update to 3.8.2.
| * gnu: slepc: Update licence.Tobias Geerinckx-Rice2018-01-29
| | | | | | | | | | | | SLEPc has been released under a 2-clause BSD licence since version 3.8. * gnu/packages/maths.scm (slepc)[licence]: Switch to bsd-2.
| * gnu: fbcat, slepc: Use INVOKE.Tobias Geerinckx-Rice2018-01-29
| | | | | | | | | | | | * gnu/packages/linux.scm (fbcat)[arguments]: Substitute INVOKE for SYSTEM*. * gnu/packages/maths.scm (slepc)[arguments]: Likewise.
| * gnu: openspecfun: Update to 0.5.3.Tobias Geerinckx-Rice2018-01-29
| | | | | | | | * gnu/packages/maths.scm (openspecfun): Update to 0.5.3.
* | gnu: opencascade-oce: Fix build with glibc 2.26.Leo Famulari2018-01-16
| | | | | | | | | | | | * gnu/packages/patches/opencascade-oce-glibc-2.26.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (opencascade-oce)[source]: Use it.
* | Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2017-12-31
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| * gnu: Fix copyright symbol.Ricardo Wurmus2017-12-24
| | | | | | | | * gnu/packages/maths.scm: Fix copyright line for Dave Love.
| * gnu, doc: Use HTTPS for cran.r-project.org home pages.Tobias Geerinckx-Rice2017-12-24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm) (r-maldiquant, r-gprofiler)[home-page]: Use HTTPS. * gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape) (r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle) (r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim) (r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken) (r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise. * gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab) [home-page]: Likewise. * gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise. * gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign) (r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability) (r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr) (r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports) (r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops) (r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options) (r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel) (r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3) (r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots) (r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools) (r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp) (r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn) (r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]: Likewise. * gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]: Likewise. * doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
| * gnu: openblas: Build with LAPACK.Dave Love2017-12-23
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas)[arguments]: Don't disable LAPACK; add set-extralib phase. [inputs]: Add fortran-lib. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* | Merge branch 'master' into core-updatesLeo Famulari2017-12-21
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| * gnu: wxmaxima: Update to 17.10.1.Kei Kebreau2017-12-19
| | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 17.10.1.
* | gnu: Remove redundant cmake libdir configure flags.Efraim Flashner2017-12-19
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (imp)[arguments]: Remove CMAKE_INSTALL_LIBDIR flag. * gnu/packages/calendar.scm (libical): Same. * gnu/packages/engineering.scm (kicad): Same. * gnu/packages/games.scm (openrct2, mgba): Same. * gnu/packages/gl.scm (virtualgl): Same. * gnu/packages/image-processing.scm (mia): Same. * gnu/packages/linux.scm (rdma-core): Same. * gnu/packages/machine-learning.scm (dlib): Same. * gnu/packages/maths.scm (lapack, superlu, z3): Same. * gnu/packages/password-utils.scm (keepassxc): Same. * gnu/packages/photo.scm (darktable): Same. * gnu/packages/rdesktop.scm (freerdp): Same.
* | Merge branch 'master' into core-updatesMarius Bakke2017-12-19
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| * gnu: ceres-solver: Update to 1.13.0.Eric Bavier2017-12-15
| | | | | | | | * gnu/packages/maths.scm (ceres-solver): Update to 1.13.0.
| * gnu: glpk: Update to 4.64.Efraim Flashner2017-12-09
| | | | | | | | * gnu/packages/maths.scm (glpk): Update to 4.64.
* | Merge branch 'master' into core-updatesMarius Bakke2017-12-05
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| * gnu: coda: Update to 2.18.3.Tobias Geerinckx-Rice2017-12-04
| | | | | | | | * gnu/packages/maths.scm (coda): Update to 2.18.3.
| * gnu: r-pracma: Update to 2.1.1.Ricardo Wurmus2017-11-30
| | | | | | | | * gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
* | Merge branch 'master' into core-updatesMarius Bakke2017-11-19
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| * gnu: Move more packages from python to python-web.Ludovic Courtès2017-11-16
| | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-requests, python2-requests) (python-requests-2.7, python-oauthlib, python2-oauthlib) (python-furl, python2-furl, python-wsgi-intercept) (python-publicsuffix, python2-publicsuffix) (python-publicsuffix2, python2-publicsuffix2): Move to... * gnu/packages/python-web.scm: ... here. * gnu/packages/bioinformatics.scm, gnu/packages/finance.scm: gnu/packages/maths.scm, gnu/packages/terminals.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm: Adjust accordingly.
| * gnu: Remove "open source" from descriptions.Ricardo Wurmus2017-11-08
| | | | | | | | | | | | | | | | | | | | | | | | All software in Guix is Free Software. * gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string. * gnu/packages/firmware.scm (seabios)[description]: Likewise. * gnu/packages/libupnp.scm (libupnp)[description]: Likewise. * gnu/packages/maths.scm (cubicle)[description]: Likewise. * gnu/packages/mingw.scm (mingw-w64)[description]: Likewise. * gnu/packages/game-development.scm (openmw)[description]: Likewise. [synopsis]: Remove "Free software".
* | Merge branch 'master' into core-updatesMarius Bakke2017-11-02
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| * gnu: units: Add readline input.Eric Bavier2017-11-01
| | | | | | | | * gnu/packages/maths.scm (units)[inputs]: Add readline.
| * gnu: units: Add python input.Eric Bavier2017-11-01
| | | | | | | | | | * gnu/packages/maths.scm (units)[inputs]: New field. [arguments]: New field. Add 'wrap-units_cur phase.
| * gnu: units: Update to 2.16.Eric Bavier2017-11-01
| | | | | | | | * gnu/packages/maths.scm (units): Update to 2.16.
* | Merge branch 'master' into core-updatesTobias Geerinckx-Rice2017-10-25
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| * gnu: dealii: Update to 8.5.1.Eric Bavier2017-10-24
| | | | | | | | | | | | Fixes compilation with boost@1.64.0. * gnu/packages/maths.scm (dealii): Update to 8.5.1.
| * gnu: p4est: Update to 2.0.Eric Bavier2017-10-24
| | | | | | | | * gnu/packages/maths.scm (p4est): Update to 2.0.
| * gnu: libhilbert: Remove package.Eric Bavier2017-10-24
| | | | | | | | | | | | | | This package's source and webpage has disappeared for some time, and upstream projects (e.g. libmesh) seem to be bundling it, so we remove it for now. * gnu/packages/maths.scm (libhilbert): Remove variable.
| * gnu: slepc: Update to 3.8.0.Eric Bavier2017-10-24
| | | | | | | | * gnu/packages/maths.scm (slepc): Update to 3.8.0.
| * gnu: petsc: Update to 3.8.0.Eric Bavier2017-10-24
| | | | | | | | | | * gnu/packages/maths.scm (petsc): Update to 3.8.0 [native-inputs]: Remove perl, which is no longer needed.
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