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* gnu: wxmaxima: Update to 19.03.1.Kei Kebreau2019-04-02
| | | | * gnu/packages/maths.scm (wxmaxima): Update to 19.03.1.
* gnu: Add mlucas.Arun Isaac2019-04-01
| | | | * gnu/packages/maths.scm (mlucas): New variable.
* gnu: hdf-java: Adjust indentation.Ricardo Wurmus2019-03-27
| | | | * gnu/packages/maths.scm (hdf-java): Adjust indentation.
* gnu: hdf-java: Fix build.Ricardo Wurmus2019-03-27
| | | | | * gnu/packages/maths.scm (hdf-java)[arguments]: Fix copying from automake; substitute embedded hdf5 version number.
* gnu: hdf-java: Use INVOKE.Ricardo Wurmus2019-03-27
| | | | | * gnu/packages/maths.scm (hdf-java)[arguments]: Unconditionally return #T from build phases.
* gnu: glm: Update to 0.9.9.4.Marius Bakke2019-03-21
| | | | * gnu/packages/maths.scm (glm): Update to 0.9.9.4.
* gnu: petsc: Update to 3.10.4.Tobias Geerinckx-Rice2019-03-18
| | | | * gnu/packages/maths.scm (petsc): Update to 3.10.4.
* gnu: gnuplot: Update to 5.2.6.Tobias Geerinckx-Rice2019-03-18
| | | | * gnu/packages/maths.scm (gnuplot): Update to 5.2.6.
* gnu: ipopt: Update to 3.12.12.Tobias Geerinckx-Rice2019-03-18
| | | | * gnu/packages/maths.scm (ipopt): Update to 3.12.12.
* Correct name and email address for ng0.ng02019-03-18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * .mailmap, Makefile.am, doc/guix.de.texi, doc/guix.fr.texi, doc/guix.texi, etc/completion/fish/guix.fish, gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/erlang.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm,gnu/packages/guile-xyz.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python-xyz.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Correct name and email address for ng0. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
* gnu: c-graph: Update to 2.0.1.Efraim Flashner2019-03-07
| | | | * gnu/packages/maths.scm (c-graph): Update to 2.0.1.
* gnu: octave, octave-cli: Update to 5.1.0.Kei Kebreau2019-03-06
| | | | * gnu/packages/maths.scm (octave, octave-cli): Update to 5.1.0.
* gnu: hypre: Remove indirect TexLive dependencies.Ricardo Wurmus2019-03-01
| | | | | | * gnu/packages/maths.scm (hypre)[native-inputs]: Remove texlive-latex-oberdiek, texlive-generic-ifxetex, and texlive-latex-url from texlive-union.
* gnu: python-petsc4py: Update to 10.3.1.Paul Garlick2019-02-26
| | | | | | * gnu/packages/maths.scm (python-petsc4py): Update to 10.3.1. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: 4ti2: Update to 1.6.9.Tobias Geerinckx-Rice2019-02-24
| | | | | * gnu/packages/maths.scm (4ti2): Update to 1.6.9. [source]: Update URI.
* gnu: dealii: Upgrade to 9.0.1.Eric Bavier2019-02-13
| | | | | | | * gnu/packages/patches/dealii-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (dealii)[source]: Upgrade to 9.0.1. Use patch. [arguments]: Use new MPI configuration flags.
* gnu: Add ELPA.Eric Bavier2019-02-13
| | | | * gnu/packages/maths.scm (elpa, elpa-openmpi): New variables.
* gnu: petsc: Upgrade to 3.10.3.Eric Bavier2019-02-13
| | | | * gnu/packages/maths.scm (petsc): Upgrade to 3.10.3.
* gnu: scalapack: Remove use of deprecated MPI1 symbols.Eric Bavier2019-02-13
| | | | | | * gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (scalapack)[source]: Use it.
* Merge branch 'staging'Ludovic Courtès2019-02-09
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| * Merge branch 'master' into stagingMarius Bakke2019-01-31
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| * \ Merge branch 'master' into stagingLudovic Courtès2019-01-20
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| * \ \ Merge branch 'master' into stagingMarius Bakke2019-01-13
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| * \ \ \ Merge remote-tracking branch 'origin/master' into stagingEfraim Flashner2019-01-09
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| * \ \ \ \ Merge branch 'master' into stagingMarius Bakke2018-12-23
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| * \ \ \ \ \ Merge branch 'master' into stagingMarius Bakke2018-12-22
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| * \ \ \ \ \ \ Merge branch 'master' into stagingMarius Bakke2018-12-12
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| * \ \ \ \ \ \ \ Merge branch 'master' into stagingMarius Bakke2018-12-09
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| * | | | | | | | | gnu: OpenBLAS: Update to 0.3.4.Marius Bakke2018-12-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.3.4.
* | | | | | | | | | gnu: Add dune-pdelab.Ricardo Wurmus2019-02-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-pdelab): New variable.
* | | | | | | | | | gnu: Add dune-functions.Ricardo Wurmus2019-02-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-functions): New variable.
* | | | | | | | | | gnu: Add dune-typetree.Ricardo Wurmus2019-02-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-typetree): New variable.
* | | | | | | | | | gnu: Add dune-alugrid.Ricardo Wurmus2019-02-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-alugrid): New variable.
* | | | | | | | | | gnu: Add dune-localfunctions.Ricardo Wurmus2019-02-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-localfunctions): New variable.
* | | | | | | | | | gnu: Add dune-istl.Ricardo Wurmus2019-02-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-istl): New variable.
* | | | | | | | | | gnu: Add dune-grid.Ricardo Wurmus2019-02-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-grid): New variable.
* | | | | | | | | | gnu: hdf5: Upgrade to 1.8.21.Eric Bavier2019-02-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (hdf5): Upgrade to 1.8.21. [source]: Make version manipulations more readable using match.
* | | | | | | | | | gnu: hdf5: Remove use of deprecated MPI1 symbols.Eric Bavier2019-02-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch, gnu/packages/patches/hdf5-mpi-deprecations.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/maths.scm (hdf5, hdf5-1.10)[source]: Use them.
* | | | | | | | | | gnu: superlu-dist: Remove use of deprecated MPI1 symbols.Eric Bavier2019-02-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/superlu-dist-fix-mpi-deprecations.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (superlu-dist)[source]: Use it.
* | | | | | | | | | gnu: Add dune-geometry.Ricardo Wurmus2019-02-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-geometry): New variable.
* | | | | | | | | | gnu: Add dune-common.Ricardo Wurmus2019-02-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dune-common): New variable.
* | | | | | | | | | gnu: wxmaxima: Update to 19.01.3.Kei Kebreau2019-02-06
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 19.01.3.
* | | | | | | | | | gnu: maxima: Update to 5.42.2.Kei Kebreau2019-02-06
| |_|_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (maxima): Update to 5.42.2.
* | | | | | | | | gnu: maxima: Patch hardcoded paths.Kei Kebreau2019-01-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm: (maxima): Patch hardcoded paths. [arguments]: Add the phase 'patch-paths' to replace references to sed, dirname, and head with direct references to the store. [inputs]: Add sed.
* | | | | | | | | gnu: dealii-openmpi: Setup MPI for tests.Eric Bavier2019-01-25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dealii-openmpi)[arguments]: Add 'mpi-setup' phase.
* | | | | | | | | superlu-dist: Upgrade to 6.1.0.Eric Bavier2019-01-25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/superlu-dist-awpm-grid.patch: New file. * gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0. Remove extraneous 'use-modules' in snippet. [build-system]: Change to cmake-build-system. [propagated-inputs]: Replace pt-scotch with pt-scotch32 to match integer sizes. Add "parmetis" input, from pt-scotch32. Move lapack to ... [inputs]: ...here. Add openblas and combinatorial-blas. [arguments]: Replace 'configure' phase with #:configure-flags. Add 'set-c++-standard' and 'omp-setup' phases. Remove 'create-install-directories, 'check', and 'install' phases, which are now handled by cmake. * gnu/local.mk (dist_patch_DATA): Add patch.
* | | | | | | | | scotch: Upgrade to 6.0.6.Eric Bavier2019-01-25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (scotch): Upgrade to 6.0.6. [source]: Remove patches that have been fixed upstream. [arguments]: Add 'install-metis' phase. [outputs]: New field. (pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase. Use 'invoke'. * gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch, gnu/packages/patches/scotch-test-threading.patch: Delete files. * gnu/packages/patches/scotch-integer-declarations.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust as necessary.
* | | | | | | | | gnu: Add Combinatorial BLAS.Eric Bavier2019-01-25
| |_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (combinatorial-blas): New variable. * gnu/packages/patches/combinatorial-blas-awpm.patch, gnu/packages/patches/combinatorial-blas-io-fix.patch: New files * gnu/local.mk(dist_patch_DATA): Add them.
* | | | | | | | gnu: z3: Update to 4.8.4.Amin Bandali2019-01-18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (z3): Update to 4.8.4. Signed-off-by: Leo Famulari <leo@famulari.name>
* | | | | | | | gnu: Separate Python core packages from the rest.Ricardo Wurmus2019-01-15
| |_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm: Move hundreds of package definitions from here... * gnu/packages/python-xyz.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/benchmark.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/cluster.scm, gnu/packages/compression.scm, gnu/packages/connman.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/direct-connect.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/elf.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/enlightenment.scm, gnu/packages/finance.scm, gnu/packages/fltk.scm, gnu/packages/fontutils.scm, gnu/packages/freedesktop.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/gtk.scm, gnu/packages/ham-radio.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/kde-frameworks.scm, gnu/packages/key-mon.scm, gnu/packages/libffi.scm, gnu/packages/libreoffice.scm, gnu/packages/libusb.scm, gnu/packages/lirc.scm, gnu/packages/logging.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/medical.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nutrition.scm, gnu/packages/openldap.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/polkit.scm, gnu/packages/protobuf.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/qt.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/search.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/simulation.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wicd.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm: Update module references.
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