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* Merge branch 'master' into core-updatesMark H Weaver2018-05-27
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| * gnu: openmpi: Update to 3.0.1.Ludovic Courtès2018-05-25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/mpi.scm (openmpi): Update to 3.0.1. [arguments]: In 'remove-absolute' phase, adjust romio file name. * gnu/packages/maths.scm (scalapack)[arguments]: Add 'set-test-environment' phase. (slepc-openmpi)[arguments]: Likewise. (mumps-openmpi)[arguments]: Likewise. (superlu-dist)[arguments]: In 'check' phase, set 'OMPI_MCA_plm_rsh_agent'. (scotch)[arguments]: In 'build-esmumps', likewise. (p4est)[arguments]: Add 'set-test-environment' phase. (hypre-openmpi)[arguments]: Likewise.
| * gnu: superlu-dist: Update to 5.3.0.Ludovic Courtès2018-05-25
| | | | | | | | | | | | * gnu/packages/maths.scm (superlu-dist): Update to 5.3.0. [source](snippet): Adapt file name and function names to new version. Remove 'delete-file' call.
* | Merge branch 'master' into core-updatesMark H Weaver2018-05-17
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| * gnu: r-desolve: Update to 1.21.Tobias Geerinckx-Rice2018-05-17
| | | | | | | | * gnu/packages/maths.scm (r-desolve): Update to 1.21.
| * gnu: hypre: Add missing dependency on Perl.Ludovic Courtès2018-05-13
| | | | | | | | | | | | | | Previously the test suite would fail to run 'ppmquant', though it would silently ignore it. * gnu/packages/maths.scm (hypre)[native-inputs]: Add PERL.
| * gnu: arpack-ng-openmpi: Fix build.Ludovic Courtès2018-05-11
| | | | | | | | | | | | * gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Inherit arguments from ARPACK-NG. Previously the 'configure' phase would fail due to the lack of a 'configure' script.
* | Merge branch 'master' into core-updatesMarius Bakke2018-05-06
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| * gnu: Add python-kiwisolver.Marius Bakke2018-05-05
| | | | | | | | | | * gnu/packages/maths.scm (python-kiwisolver, python2-kiwisolver): New public variables.
| * gnu: gnuplot: Update to 5.2.2Adam Massmann2018-05-04
| | | | | | | | | | | | | | * gnu/packages/maths.scm (gnuplot): Update to 5.2.2. [arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | Merge branch 'master' into core-updatesMark H Weaver2018-04-30
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| * gnu: mumps: Update to 5.1.2.Eric Bavier2018-04-26
| | | | | | | | * gnu/packages/maths.scm (mumps): Update to 5.1.2.
| * gnu: scotch: Update to 6.0.5a.Eric Bavier2018-04-26
| | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files. * gnu/packages/patches/scotch-build-parallelism.patch, gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/maths.scm (scotch): Update to 6.0.5a. [source](patches): Adjust accordingly.
| * gnu: r-subplex: Update to 1.5-4.Ricardo Wurmus2018-04-21
| | | | | | | | * gnu/packages/maths.scm (r-subplex): Update to 1.5-4.
* | Merge branch 'master' into core-updatesMark H Weaver2018-04-10
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| * gnu: vc: Do not optimize for the build machine CPU.Marius Bakke2018-04-08
| | | | | | | | | | * gnu/packages/maths.scm (vc)[arguments]: Add "-DTARGET_ARCHITECTURE=none" to #:configure-flags.
| * gnu: Add qtoctave.Kei Kebreau2018-03-31
| | | | | | | | * gnu/packages/maths.scm (qtoctave): New variable.
| * gnu: octave: Add audio and more sparse matrix support.Kei Kebreau2018-03-31
| | | | | | | | | | * gnu/packages/maths.scm (octave)[inputs]: Add suitesparse, libsndfile, portaudio and alsa-lib.
* | Merge branch 'master' into core-updatesMarius Bakke2018-03-29
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| * gnu: Add tcalc.Nadya Voronova2018-03-28
| | | | | | | | | | | | * gnu/packages/maths.scm (tcalc): New variables. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
| * gnu: scotch: Use predictable source URI.Tobias Geerinckx-Rice2018-03-25
| | | | | | | | * gnu/packages/maths.scm (scotch)[source]: Use predictable URI.
| * gnu: openlibm: Update to 0.5.5.Tobias Geerinckx-Rice2018-03-25
| | | | | | | | * gnu/packages/maths.scm (openlibm): Update to 0.5.5.
| * gnu: ceres-solver: Update to 1.14.0.Tobias Geerinckx-Rice2018-03-25
| | | | | | | | * gnu/packages/maths.scm (ceres-solver): Update to 1.14.0.
* | Merge branch 'master' into core-updatesMark H Weaver2018-03-20
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| * Correct name and Email for ng0.ng02018-03-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * .mailmap: Correct name and Email for ng0. * Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
* | Merge branch 'master' into core-updatesMark H Weaver2018-03-20
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| * gnu: Add ruby-asciimath.Ben Woodcroft2018-03-18
| | | | | | | | * gnu/packages/maths.scm (ruby-asciimath): New variable.
* | Merge branch 'master' into core-updatesMark H Weaver2018-03-17
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| * gnu: octave: Update to 4.2.2.Tobias Geerinckx-Rice2018-03-15
| | | | | | | | * gnu/packages/maths.scm (octave): Update to 4.2.2.
| * gnu: Add r-desolve.Leo Famulari2018-03-15
| | | | | | | | * gnu/packages/maths.scm (r-desolve): New variable.
| * gnu: Add r-subplex.Leo Famulari2018-03-15
| | | | | | | | gnu/packages/maths.scm (r-subplex): New variable.
* | gnu: All snippets report errors using exceptions, else return #t.Mark H Weaver2018-03-16
|/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/base.scm, gnu/packages/bioinformatics.scm, gnu/packages/cdrom.scm, gnu/packages/chez.scm, gnu/packages/code.scm, gnu/packages/compression.scm, gnu/packages/cross-base.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm, gnu/packages/databases.scm, gnu/packages/dns.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/enlightenment.scm, gnu/packages/fpga.scm, gnu/packages/freedesktop.scm, gnu/packages/ftp.scm, gnu/packages/games.scm, gnu/packages/gcc.scm, gnu/packages/geo.scm, gnu/packages/ghostscript.scm, gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm, gnu/packages/gnuzilla.scm, gnu/packages/graphics.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm, gnu/packages/irc.scm, gnu/packages/java.scm, gnu/packages/kerberos.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lxde.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/maths.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/music.scm, gnu/packages/netpbm.scm, gnu/packages/networking.scm, gnu/packages/node.scm, gnu/packages/nvi.scm, gnu/packages/ocaml.scm, gnu/packages/pdf.scm, gnu/packages/perl.scm, gnu/packages/php.scm, gnu/packages/plotutils.scm, gnu/packages/pretty-print.scm, gnu/packages/profiling.scm, gnu/packages/pulseaudio.scm, gnu/packages/python-crypto.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/robotics.scm, gnu/packages/sawfish.scm, gnu/packages/scanner.scm, gnu/packages/scheme.scm, gnu/packages/scribus.scm, gnu/packages/sdl.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/slang.scm, gnu/packages/smalltalk.scm, gnu/packages/ssh.scm, gnu/packages/sync.scm, gnu/packages/syncthing.scm, gnu/packages/tbb.scm, gnu/packages/terminals.scm, gnu/packages/texinfo.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/tls.scm, gnu/packages/unrtf.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/wxwidgets.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm: In all snippets, report errors using exceptions, or else return #t.
* gnu: arpack-ng: Update to 3.5.0; use 3.3.0 for julia.Ludovic Courtès2018-03-12
| | | | | | | | | Partly fixes <https://bugs.gnu.org/30282>. * gnu/packages/maths.scm (arpack-ng): Update to 3.5.0. [native-inputs]: New field. (arpack-ng-3.3.0): New variable. * gnu/packages/julia.scm (julia)[inputs]: Use ARPACK-NG-3.3.0.
* gnu: hdf5: Do not record the build-time kernel version.Ricardo Wurmus2018-03-09
| | | | | * gnu/packages/maths.scm (hdf5)[arguments]: Patch libhdf5.settings to prevent the kernel version on the build node from affecting the output.
* gnu: dionysus: Update to 1.4.0.Efraim Flashner2018-02-28
| | | | * gnu/packages/maths.scm (dionysus): Update to 1.4.0.
* gnu: wxmaxima: Update to 18.02.0.Kei Kebreau2018-02-24
| | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 18.02.0. [source]: Add patch. [build-system]: Use the cmake-build-system. [native-inputs]: Remove autoconf and automake. [arguments]: Disable tests, remove 'autoconf' phase. * gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: vc: Update to 1.3.3.Leo Famulari2018-02-23
| | | | * gnu/packages/maths.scm (vc): Update to 1.3.3.
* gnu: lpsolve: Update to 5.5.2.5.Tobias Geerinckx-Rice2018-02-21
| | | | * gnu/packages/maths.scm (lpsolve): Update to 5.5.2.5.
* gnu: lpsolve: Update phase style.Tobias Geerinckx-Rice2018-02-21
| | | | | * gnu/packages/maths.scm (lpsolve)[arguments]: Use INVOKE and INSTALL-FILE, and end phases with #t.
* Merge branch 'master' into core-updatesRicardo Wurmus2018-02-18
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| * gnu: glpk: Update to 4.65.Marius Bakke2018-02-16
| | | | | | | | * gnu/packages/maths.scm (glpk): Update to 4.65.
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-13
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| * gnu: r-pracma: Update to 2.1.4.Ricardo Wurmus2018-02-13
| | | | | | | | * gnu/packages/maths.scm (r-pracma): Update to 2.1.4.
| * gnu: hdf5: Build with -fPIC.Ricardo Wurmus2018-02-12
| | | | | | | | * gnu/packages/maths.scm (hdf5)[arguments]: Add -fPIC to CFLAGS and CXXFLAGS.
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-09
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| * gnu: mcrl2: Fix typo in synopsis.Tobias Geerinckx-Rice2018-02-08
| | | | | | | | | | * gnu/packages/maths.scm (mcrl2)[synopsis]: Fix typo. [description]: Use @dfn.
| * gnu: Add mcrl2.Jan Nieuwenhuizen2018-02-08
| | | | | | | | * gnu/packages/maths.scm (mcrl2): New variable.
* | Merge branch 'master' into core-updatesMark H Weaver2018-02-03
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| * gnu: slepc: Apply invoke to configure flags.Eric Bavier2018-02-02
| | | | | | | | | | | | | | Follow-up to 94a1eb96d32fcce97ee5d9440ecffe22f7555cd5 * gnu/packages/maths.scm (slepc)[arguments]: Use 'apply' since 'flags' is a list of configure arguments.
| * gnu: Add Elemental.Eric Bavier2018-02-02
| | | | | | | | * gnu/packages/maths.scm (elemental): New variable.
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