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| * | | | | | | | | | gnu: Adjust uses of C{,PLUS}_INCLUDE_PATH for GCC 7.Marius Bakke2019-07-14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | These variables are no longer set in the build environment by default. GCC still respects these search paths and treats them as "system headers" so we can continue to use them, just not expect them to be available. * gnu/packages/mpi.scm (openmpi)[arguments]: Do not attempt to read from C_INCLUDE_PATH, nor CPLUS_INCLUDE_PATH. * gnu/packages/games.scm (kiki)[arguments]: Likewise. * gnu/packages/networking.scm (hcxtools)[arguments]: Likewise. * gnu/packages/synergy.scm (synergy)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (gemma, sailfish)[arguments]: Likewise. * gnu/packages/maths.scm (dune-alugrid)[arguments]: Likewise.
| * | | | | | | | | | Merge branch 'staging' into core-updatesMarius Bakke2019-07-02
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| * \ \ \ \ \ \ \ \ \ \ Merge branch 'master' into core-updatesLudovic Courtès2019-06-27
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| * \ \ \ \ \ \ \ \ \ \ \ Merge branch 'staging' into core-updatesMarius Bakke2019-06-20
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| * \ \ \ \ \ \ \ \ \ \ \ \ Merge branch 'master' into core-updatesLudovic Courtès2019-06-13
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| * \ \ \ \ \ \ \ \ \ \ \ \ \ Merge branch 'staging' into core-updatesMarius Bakke2019-05-25
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| * | | | | | | | | | | | | | | gnu: OpenBLAS: Update to 0.3.6.Marius Bakke2019-05-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (openblas): Update to 0.3.6.
* | | | | | | | | | | | | | | | gnu: maxflow: Use HTTPS home page.Tobias Geerinckx-Rice2019-10-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (maxflow)[home-page]: Use HTTPS.
* | | | | | | | | | | | | | | | gnu: maxflow: Correct version to 3.0.5.Tobias Geerinckx-Rice2019-10-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This won't be picked up by ‘guix package -u’, but the code is identical anyway. By changing this now, fewer installations will fail to upgrade at all if upstream ever release a new <3.4. * gnu/packages/maths.scm (maxflow)[version]: Change to 3.0.5. [source]: Use version tag instead of raw matching commit.
* | | | | | | | | | | | | | | | gnu: maxflow: Use GIT-FILE-NAME.Tobias Geerinckx-Rice2019-10-08
| |_|_|_|_|_|_|_|_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (maxflow)[source]: Use GIT-FILE-NAME.
* | | | | | | | | | | | | | | gnu: Add mcrl2-minimal.Jan Nieuwenhuizen2019-09-30
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (mcrl2-minimal): New variable.
* | | | | | | | | | | | | | | gnu: mcrl2: Update to 201908.0.Jan Nieuwenhuizen2019-09-30
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (mcrl2): Update to 201908.0.
* | | | | | | | | | | | | | | gnu: z3: Update to 4.8.6.Tobias Geerinckx-Rice2019-09-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (z3): Update to 4.8.6.
* | | | | | | | | | | | | | | gnu: dealii: Update to 9.1.1.Eric Bavier2019-09-27
| |_|_|_|_|_|_|_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (dealii): Update to 9.1.1. [source]: Remove patch no longer needed. * gnu/local.mk (dist_patch_DATA): ditto. * gnu/packages/patches/dealii-mpi-deprecations.patch: Delete it.
* | | | | | | | | | | | | | gnu: glm: Update to 0.9.9.6.Tobias Geerinckx-Rice2019-09-24
| |_|_|_|_|_|_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (glm): Update to 0.9.9.6. [source]: Add patch. * gnu/packages/patches/glm-restore-install-target.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* | | | | | | | | | | | | gnu: wxmaxima: Update to 19.09.0.Tobias Geerinckx-Rice2019-09-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 19.09.0.
* | | | | | | | | | | | | gnu: octave: Use texlive-union.Ricardo Wurmus2019-09-20
| |_|_|_|_|_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (octave)[native-inputs]: Replace texlive with texlive-union containing texlive-epsf.
* | | | | | | | | | | | gnu: gmsh: Update home page.Paul Garlick2019-09-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This addresses a 'guix lint' warning. * gnu/packages/maths.scm (gmsh)[home-page]: Update to avoid URL redirection.
* | | | | | | | | | | | gnu: openblas: Set 'NUM_THREADS'.Ludovic Courtès2019-09-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Until now, OpenBLAS would use at most the N threads, where N is the number of cores that happened to be available on the build machine (typically N=8). * gnu/packages/maths.scm (openblas/fixed-num-threads): New variable. (openblas)[replacement]: New field. (openblas-ilp64): Use 'package/inherit'.
* | | | | | | | | | | | gnu: gmsh: Fetch source from Git.Paul Garlick2019-09-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (gmsh)[source]: Switch to GIT-FETCH.
* | | | | | | | | | | | gnu: hypre: Update texlive-union.Ricardo Wurmus2019-09-12
| |_|_|_|_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (hypre)[native-inputs]: Replace texlive-generic-xypic and texlive-fonts-xypic with texlive-xypic; add texlive-cm to the texlive-union.
* | | | | | | | | | | gnu: hdf4: Update to 4.2.14.Marius Bakke2019-09-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (hdf4): Update to 4.2.14.
* | | | | | | | | | | gnu: Add speedcrunch.Steve Sprang2019-08-31
| |_|_|_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (speedcrunch): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* | | | | | | | | | gnu: python-cvxopt: Update to 1.2.3.Tobias Geerinckx-Rice2019-08-26
| |_|_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (python-cvxopt): Update to 1.2.3.
* | | | | | | | | gnu: wxmaxima: Update to 19.08.0.Kei Kebreau2019-08-20
| |_|_|_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 19.08.0.
* | | | | | | | Merge branch 'master' into stagingMarius Bakke2019-08-08
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| * | | | | | | | gnu: r-desolve: Update to 1.24.Ricardo Wurmus2019-08-06
| | |_|_|_|_|_|/ | |/| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (r-desolve): Update to 1.24.
* / | | | | | | gnu: double-conversion: Update to 3.1.5.Marius Bakke2019-08-04
|/ / / / / / / | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (double-conversion): Update to 3.1.5.
* | | | | | / gnu: Add opencascade-occt.Paul Garlick2019-07-16
| |_|_|_|_|/ |/| | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (opencascade-occt): New variable.
* | | | | | gnu: octave-cli: Sort inputs alphabetically.Efraim Flashner2019-07-02
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (octave-cli)[inputs]: Sort inputs alphabetically.
* | | | | | gnu: atlas: All phases return #t.Efraim Flashner2019-06-28
| |_|_|_|/ |/| | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (atlas)[arguments]: Ensure all custom phases return #t.
* | | | | gnu: gnuplot: Update to 5.2.7.Tobias Geerinckx-Rice2019-06-21
| |_|_|/ |/| | | | | | | | | | | * gnu/packages/maths.scm (gnuplot): Update to 5.2.7.
* | | | gnu: Add ppl.Andreas Enge2019-06-20
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (ppl): New variable.
* | | | gnu: Move ratpoints into a different module.Nicolas Goaziou2019-06-20
| | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (ratpoints): Move... * gnu/packages/algebra.scm: ...here.
* | | | gnu: Add ratpoints.Nicolas Goaziou2019-06-19
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (ratpoints): New variable. * gnu/packages/patches/ratpoints-sturm_and_rp_private.patch: New file. * gnu/local.mk (dist_patch_DATA): Reference patch.
* | | | gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module.Andreas Enge2019-06-17
| | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here... * gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here.
* | | | gnu: Add edge-addition-planarity-suite.Andreas Enge2019-06-17
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (edge-addition-planarity-suite): New variable.
* | | | gnu: units: Update to 2.19.Ludovic Courtès2019-06-15
| |_|/ |/| | | | | | | | * gnu/packages/maths.scm (units): Update to 2.19.
* | | gnu: wxmaxima: Update to 19.05.7.Kei Kebreau2019-06-04
| | | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 19.05.7.
* | | gnu: maxima: Update to 5.43.0.Kei Kebreau2019-06-04
| | | | | | | | | | | | | | | * gnu/packages/maths.scm (maxima): Update to 5.43.0. [arguments]: Adjust "patch-paths" and "post-install" phases.
* | | gnu: dealii-openmpi: Add hdf5-parallel-openmpi input.Eric Bavier2019-05-31
| | | | | | | | | | | | * gnu/packages/maths.scm (dealii-openmpi)[inputs]: Add hdf5-parallel-openmpi.
* | | gnu: slepc: Update to 3.11.1.Eric Bavier2019-05-31
| | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (slepc): Update to 3.11.1. [native-inputs]: Add petsc:examples. [arguments]: Add PETSCCONFIGDIR to #:make-flags.
* | | gnu: petsc: Update to 3.11.2.Eric Bavier2019-05-31
| | | | | | | | | | | | * gnu/packages/maths.scm (petsc): Update to 3.11.2.
* | | gnu: petsc-complex-mpi: Setup MPI for tests.Eric Bavier2019-05-31
| |/ |/| | | | | | | * gnu/packages/maths.scm (petsc-complex-mpi)[arguments]: Add 'mpi-setup phase.
* | gnu: mumps: Fix typo "Gaussian".Vagrant Cascadian2019-05-22
| | | | | | | | * gnu/packages/maths (mumps)[description]: Fix typo.
* | gnu: hdf5-parallel-openmpi: Fix typo "explicitly".Vagrant Cascadian2019-05-22
| | | | | | | | * gnu/packages/maths (hdf5-parallel-openmpi): Fix typo.
* | gnu: mlucas: Update source hash.Tobias Geerinckx-Rice2019-05-17
| | | | | | | | | | | | | | The tarball was modified in-place with too many small changes to list here, all of them apparently intended as minor bug fixes. * gnu/packages/maths.scm (mlucas)[source]: Update sha256.
* | gnu: Add nauty.Nicolas Goaziou2019-05-16
| | | | | | | | * gnu/packages/maths.scm (nauty): New variable.
* | gnu: hdf5: Add dependency on Perl.Ludovic Courtès2019-05-14
| | | | | | | | * gnu/packages/maths.scm (hdf5)[native-inputs]: Add PERL.
* | gnu: hdf5: Build a thread-safe library.Ludovic Courtès2019-05-14
| | | | | | | | | | * gnu/packages/maths.scm (hdf5)[arguments]: Pass "--enable-threadsafe --with-pthread --enable-unsupported".
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