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* gnu: Put autoconf-related phases immediately after the 'unpack phase.Kei Kebreau2017-09-04
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/audio.scm (audacity, rtmidi)[arguments]: Correct phases accordingly. * gnu/packages/bioinformatics.scm (mash, seek, vsearch, emboss, htslib-for-sambamba)[arguments]: Likewise. * gnu/packages/ci.scm (cuirass)[arguments]: Likewise. * gnu/packages/compression.scm (minizip, xdelta)[arguments]: Likewise. * gnu/packages/cpp.scm (libzen)[arguments]: Likewise. * gnu/packages/crypto.scm (opendht)[arguments]: Likewise. * gnu/packages/databases.scm (4store, mdbtools)[arguments]: Likewise. * gnu/packages/debug.scm (stress-make)[arguments]: Likewise. * gnu/packages/dns.scm (dnscrypt-proxy, dnscrypt-wrapper)[arguments]: Likewise. * gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Likewise. * gnu/packages/embedded.scm (libjaylink, openocd)[arguments]: Likewise. * gnu/packages/engineering.scm (gerbv)[arguments]: Likewise. * gnu/packages/erlang.scm (erlang)[arguments]: Likewise. * gnu/packages/ftp.scm (weex)[arguments]: Likewise. * gnu/packages/gnome.scm (dia)[arguments]: Likewise. * gnu/packages/gnunet.scm (gnurl, guile-gnunet)[arguments]: Likewise. * gnu/packages/gtk.scm (guile-rsvg, graphene)[arguments]: Likewise. * gnu/packages/guile.scm (guildhall, guile-ics, guile-sqlite3)[arguments]: Likewise. * gnu/packages/ibus.scm (ibus-libpinyin)[arguments]: Likewise. * gnu/packages/irc.scm (weechat)[arguments]: Likewise. * gnu/packages/java.scm (classpath-devel)[arguments]: Likewise. * gnu/packages/libreoffice.scm (libetonyek)[arguments]: Likewise. * gnu/packages/libusb.scm (hidapi)[arguments]: Likewise. * gnu/packages/linux.scm (gpm)[arguments]: Likewise. * gnu/packages/logging.scm (glog)[arguments]: Likewise. * gnu/packages/machine-learning.scm (ghmm)[arguments]: Likewise. * gnu/packages/mail.scm (dovecot-trees, dovecot-libsodium-plugin, esmtp) [arguments]: Likewise. * gnu/packages/messaging.scm (freetalk, libmesode, libstrophe)[arguments]: Likewise. * gnu/packages/microcom.scm (microcom)[arguments]: Likewise. * gnu/packages/ocaml.scm (ocaml-ssl)[arguments]: Likewise. * gnu/packages/parallel.scm (slurm)[arguments]: Likewise. * gnu/packages/pdf.scm (libharu)[arguments]: Likewise. * gnu/packages/samba.scm (cifs-utils)[arguments]: Likewise. * gnu/packages/serialization.scm (msgpack)[arguments]: Likewise. * gnu/packages/shells.scm (scsh)[arguments]: Likewise. * gnu/packages/telephony.scm (libiax2)[arguments]: Likewise. * gnu/packages/textutils.scm (dotconf)[arguments]: Likewise. * gnu/packages/version-control.scm (findnewest)[arguments]: Likewise. * gnu/packages/video.scm (libmediainfo, mediainfo)[arguments]: Likewise.
* gnu: Add missing references to (gnu packages cran).Ricardo Wurmus2017-08-03
| | | | | | This is a follow-up to commit a8cba9dd112528d67a946eee057c838221eb5249. Reported-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: Add ocaml4.01-mcl.Ben Woodcroft2017-05-10
| | | | * gnu/packages/machine-learning.scm (ocaml4.01-mcl): New variable.
* gnu: Fix typos in descriptions.Tobias Geerinckx-Rice2017-04-17
| | | | | | | | | | | | | | | | | | | | | | * gnu/packages/admin.scm (di)[description]: Likewise. * gnu/packages/bioinformatics.scm (r-annotate)[description]: Likewise. * gnu/packages/datastructures.scm (sparsehash)[description]: Likewise. * gnu/packages/dns.scm (knot)[description]: Likewise. * gnu/packages/emacs.scm (emacs-idle-highlight)[synopsis, description]: Likewise. * gnu/packages/gnome.scm (libpeas)[description]: Likewise. * gnu/packages/gtk.scm (python2-pygtk)[description]: Likewise. * gnu/packages/kde-frameworks.scm (kactivities)[description]: Fix typo. * gnu/packages/libevent.scm (perl-anyevent)[description]: Likewise. * gnu/packages/machine-learning.scm (ghmm)[description]: Likewise. * gnu/packages/mail.scm (mlmmj)[description]: Likewise. * gnu/packages/maths.scm (vc)[description]: Likewise. * gnu/packages/music.scm (gx-super-fuzz-lv2)[description]: Likewise. * gnu/packages/networking.scm (nload)[description]: Likewise. * gnu/packages/python.scm (python-execnet)[description]: Likewise. * gnu/packages/terminals.scm (tilda)[description]: Likewise. * gnu/packages/python.scm (python-execnet, python-tables) (python2-coverage-test-runner, python2-rope)[description]: Likewise.
* gnu: Add ocaml-mcl.Ben Woodcroft2017-03-17
| | | | * gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
* gnu: r: Rename to r-minimal.Ricardo Wurmus2017-03-17
| | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r): Rename to... (r-minimal): ...this new variable. (r-with-recommended-packages): Rename to... (r): ...this. * guix/build-system/r.scm (default-r): Reference r-minimal. * gnu/packages/emacs.scm (emacs-ess)[inputs], gnu/packages/machine-learning.scm (shogun)[inputs], gnu/packages/python.scm (python-rpy2)[inputs], gnu/packages/bioinformatics.scm (ribotaper)[inputs], (couger)[propagated-inputs], (roary)[inputs], (rsem)[inputs], (rcas-web)[inputs]: Change "r" to "r-minimal".
* gnu: r-nnet: Move to set of recommended R packages.Ricardo Wurmus2017-03-17
| | | | | | * gnu/packages/machine-learning.scm (r-nnet): Move from here... * gnu/packages/statistics.scm (r-nnet): ...to here because the other recommended R packages are here.
* gnu: dlib: Update to 19.3.Marius Bakke2017-02-25
| | | | | * gnu/packages/machine-learning.scm (dlib): Update to 19.3. [arguments]: Enable one more test.
* gnu: dlib: Update to 19.2.Marius Bakke2017-02-21
| | | | | | * gnu/packages/machine-learning.scm (dlib): Update to 19.2. [arguments]: Enable previously failing tests. Fix truthiness of some phases. [source]: End snippet on #t.
* gnu: Add r-kernlab.Ricardo Wurmus2016-11-28
| | | | * gnu/packages/machine-learning.scm (r-kernlab): New variable.
* gnu: ghmm: Run tests after install.Ricardo Wurmus2016-10-04
| | | | | * gnu/packages/machine-learning.scm (ghmm)[arguments]: Move "check" phase after "install"; add phase "fix-PYTHONPATH".
* gnu: randomjungle: Only build on x86_64 and i686.Ricardo Wurmus2016-09-23
| | | | | * gnu/packages/machine-learning.scm (randomjungle)[supported-systems]: Only build on x86_64 and i686.
* gnu: dlib: Disable failing tests.Marius Bakke2016-09-13
| | | | | | | | | * gnu/packages/machine-learning.scm (dlib)[arguments]: Add phase 'disable-failing-tests' for tests that are known not to work in the current release. [inputs]: Add lapack. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: dlib: Do not build dlib twice for tests.Marius Bakke2016-09-13
| | | | | | | * gnu/packages/machine-learning.scm (dlib)[arguments]: Use makefile instead of cmake in check phase to prevent full rebuild. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: dlib: Remove unused fftw from inputs.Marius Bakke2016-09-13
| | | | | | | * gnu/packages/machine-learning.scm (dlib)[inputs]: Remove fftw. (define-module): Don't include algebra.scm. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add dlib.Marius Bakke2016-08-18
| | | | | | * gnu/packages/machine-learning.scm (dlib): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add mcl.Ben Woodcroft2016-08-08
| | | | * gnu/packages/machine-learning.scm (mcl): New variable.
* gnu: Add ghmm.Ricardo Wurmus2016-05-31
| | | | * gnu/packages/machine-learning.scm (ghmm): New variable.
* gnu: randomjungle: Add gfortran:lib to native-inputs.Efraim Flashner2016-05-25
| | | | | * gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Add gfortran:lib.
* gnu: Add r-nnet.Ricardo Wurmus2016-04-14
| | | | * gnu/packages/machine-learning.scm (r-nnet): New variable.
* gnu: Add AdaptiveSparsity.Ricardo Wurmus2015-12-21
| | | | * gnu/packages/machine-learning.scm (r-adaptivesparsity): New variable.
* gnu: shogun: Disable build on non-x86_64.Ricardo Wurmus2015-11-02
| | | | | * gnu/packages/machine-learning.scm (shogun)[supported-systems]: Add field.
* gnu: shogun: Move package to machine-learning.scm.Ricardo Wurmus2015-08-14
| | | | | * gnu/packages/bioinformatics.scm (shogun): Move from here... * gnu/packages/machine-learning.scm (shogun): ...to here.
* gnu: Replace versioned gfortran inputs with just "gfortran".Ricardo Wurmus2015-06-25
| | | | | | | | | | | | | | | * gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with "gfortran". * gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise. * gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu) (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise. (octave)[native-inputs]: Likewise. (gmsh)[propagated-inputs]: Likewise. * gnu/packages/mpi.scm (openmpi)[inputs]: Likewise. * gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise. * gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise. * gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with "gfortran".
* gnu: Add randomjungle.Ricardo Wurmus2015-06-12
| | | | * gnu/packages/machine-learning.scm (randomjungle): New variable.
* gnu: Add python-libsvm.Ricardo Wurmus2015-06-12
| | | | * gnu/packages/machine-learning.scm (python-libsvm): New variable.
* gnu: Add libsvm.Ricardo Wurmus2015-06-12
* gnu/packages/machine-learning.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
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