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* Merge branch 'master' into core-updatesMarius Bakke2020-03-30
|\ | | | | | | | | | | | | | | | | | | | | Conflicts: gnu/packages/admin.scm gnu/packages/commencement.scm gnu/packages/guile.scm gnu/packages/linux.scm gnu/packages/package-management.scm gnu/packages/pulseaudio.scm gnu/packages/web.scm
| * gnu: igraph: Update to 0.8.1.Tobias Geerinckx-Rice2020-03-29
| | | | | | | | * gnu/packages/graph.scm (igraph): Update to 0.8.1.
* | gnu: mscgen: Fix build with gd >= 2.3.0.Marius Bakke2020-03-27
|/ | | | | | 'gd' no longer provides 'libgd-config', so use 'pkg-config' instead. * gnu/packages/graph.scm (mscgen)[native-inputs]: Add PKG-CONFIG.
* gnu: r-igraph: Update to 1.2.5.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/graph.scm (r-igraph): Update to 1.2.5.
* gnu: Update pypi.python.org home pages & use HTTPS.Tobias Geerinckx-Rice2020-03-04
| | | | | | | | | | | | | | | | | | | * gnu/packages/check.scm (python-unittest2, python-pytest-localserver) (python-discover)[home-page]: Follow (HTTPS) redirections. * gnu/packages/fontutils.scm (python2-defcon)[home-page]: Likewise. * gnu/packages/glib.scm (python2-pygobject-2)[home-page]: Likewise. * gnu/packages/graph.scm (python-igraph)[home-page]: Likewise. * gnu/packages/graphviz.scm (xdot)[home-page]: Likewise. * gnu/packages/pdf.scm (python-poppler-qt5)[home-page]: Likewise. * gnu/packages/python-web.scm (python-zope-event, python-zope-testing) (python-zope-testrunner, python-zope-i18nmessageid, python-zope-schema) (python-zope-configuration, python-zope-proxy, python-zope-location) (python-zope-security))[home-page]: Likewise. * gnu/packages/python-xyz.scm (python-setuptools,python-six) (python2-dogtail, python2-enum, python-enum34, python-unidecode) (python-numpydoc, python-decorator, python-drmaa, python-pathlib2) (python-ly, python-msgpack, python-termcolor, python-colorama) (python-pluggy, python2-pathlib2, python-rfc3987)[home-page]: Likewise.
* gnu: python-igraph: Update to 0.8.0.Ricardo Wurmus2020-02-24
| | | | | | | | * gnu/packages/graph.scm (python-igraph): Update to 0.8.0. [arguments]: Replace build phase; move check phase after install phase; pass "--use-pkg-config" to avoid rebuilding igraph. [propagated-inputs]: Add python-texttable. [native-inputs]: Add python-pytest.
* gnu: igraph: Update to 0.8.0.Ricardo Wurmus2020-02-24
| | | | * gnu/packages/graph.scm (igraph): Update to 0.8.0.
* gnu: Add mscgen.Alexander Krotov2020-02-11
| | | | | | * gnu/packages/graph.scm (mscgen): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Use HTTPS for bioconductor.org.Tobias Geerinckx-Rice2020-01-21
| | | | | | | | * gnu/packages/bioinformatics.scm (r-homo-sapiens)[source]: Use HTTPS. * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked, r-cghcall, r-diffbind, r-cghbase, r-ripseeker, r-chippeakanno, r-qdnaseq, r-marray, r-multtest)[home-page]: Likewise. * gnu/packages/graph.scm (r-rgraphviz)[home-page]: Likewise.
* gnu: r-rgraphviz: Update to 2.30.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/graph.scm (r-rgraphviz): Update to 2.30.0.
* gnu: python-pandas: Move to (gnu packages python-science).Ricardo Wurmus2019-12-04
| | | | | | | | | * gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from here... * gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here. * gnu/packages/benchmark.scm, gnu/packages/databases.scm, gnu/packages/graph.scm, gnu/packages/parallel.scm, gnu/packages/serialization.scm: Import (gnu packages python-science).
* gnu: r-igraph: Update to 1.2.4.2.Ricardo Wurmus2019-11-28
| | | | * gnu/packages/graph.scm (r-igraph): Update to 1.2.4.2.
* gnu: Remove more GCC < 7 workarounds.Marius Bakke2019-10-20
| | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/abiword.scm (abiword)[arguments]: Do not pass "-std=c++11" to the GCC command line. * gnu/packages/aidc.scm (zbar)[arguments]: Likewise. * gnu/packages/android.scm (android-libbase, android-libcutils, android-libziparchive, fastboot)[arguments]: Likewise. * gnu/packages/audio.scm (azr3, guitarix, suil)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (bless)[arguments]: Likewise. * gnu/packages/bittorrent.scm (libtorrent-rasterbar)[arguments]: Likewise. * gnu/packages/code.scm (rtags)[arguments]: Likewise. * gnu/packages/coq.scm (coq-gappa)[arguments]: Likewise. * gnu/packages/emulators.scm (dolphin-emu)[arguments]: Likewise. * gnu/packages/engineering.scm (xyce-serial, xyce-parallel)[arguments]: Likewise. * gnu/packages/gnupg.scm (pinentry-qt)[arguments]: Likewise. * gnu/packages/gobby.scm (libnet6, obby)[arguments]: Likewise. * gnu/packages/graph.scm (python-faiss)[arguments]: Likewise. * gnu/packages/graphics.scm (povray)[arguments]: Likewise. * gnu/packages/image-processing.scm (opencv, itk-snap)[arguments]: Likewise. * gnu/packages/image.scm (freeimage)[arguments]: Likewise. * gnu/packages/kodi.scm (crossguid)[arguments]: Likewise. * gnu/packages/music.scm (amsynth, qmidiarp, qmidiroute, seq24)[arguments]: Likewise. * gnu/packages/pdf.scm (python-poppler-qt5)[arguments]: Likewise. * gnu/packages/sagemath.scm (lcalc)[arguments]: Likewise. * gnu/packages/video.scm (vlc, mlt, v4l-utils)[arguments]: Likewise.
* gnu: r-diffusionmap: Update to 1.2.0.Ricardo Wurmus2019-09-14
| | | | * gnu/packages/graph.scm (r-diffusionmap): Update to 1.2.0.
* gnu: Add rw.Andreas Enge2019-06-17
| | | | * gnu/packages/graph.scm (rw): New variable.
* gnu: edge-addition-planarity-suite: Move to the (gnu packages graph) module.Andreas Enge2019-06-17
| | | | | * gnu/packages/maths.scm (edge-addition-planarity-suite): Move from here... * gnu/packages/maths.scm (edge-addition-planarity-suite): ...to here.
* gnu: Add python-leidenalg.Ricardo Wurmus2019-05-16
| | | | * gnu/packages/graph.scm (python-leidenalg): New variable.
* gnu: r-rgraphviz: Update to 2.28.0.Ricardo Wurmus2019-05-06
| | | | * gnu/packages/graph.scm (r-rgraphviz): Update to 2.28.0.
* gnu: r-igraph: Update to 1.2.4.1.Ricardo Wurmus2019-04-24
| | | | * gnu/packages/graph.scm (r-igraph): Update to 1.2.4.1.
* gnu: Add python-louvain.Ricardo Wurmus2019-04-02
| | | | * gnu/packages/graph.scm (python-louvain): New variable.
* gnu: python-faiss: Fix building on non-Intel architectures.Efraim Flashner2019-03-29
| | | | | * gnu/packages/graph.scm (python-faiss)[arguments]: Adjust custom 'build-swig phase to change build flags for different archictures.
* gnu: faiss: Fix building on non-Intel architectures.Efraim Flashner2019-03-29
| | | | | | | * gnu/packages/graph.scm (faiss)[source]: Add snippet to wrap Intel specific headers. [arguments]: Adjust custom 'prepare-build phase to adjust compile flags for different architectures.
* gnu: Add python-faiss.Ricardo Wurmus2019-03-29
| | | | * gnu/packages/graph.scm (python-faiss): New variable.
* gnu: Add faiss.Ricardo Wurmus2019-03-29
| | | | * gnu/packages/graph.scm (faiss): New variable.
* gnu: r-igraph: Update to 1.2.4.Ricardo Wurmus2019-03-07
| | | | * gnu/packages/graph.scm (r-igraph): Update to 1.2.4.
* gnu: Separate Python core packages from the rest.Ricardo Wurmus2019-01-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm: Move hundreds of package definitions from here... * gnu/packages/python-xyz.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/benchmark.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/cluster.scm, gnu/packages/compression.scm, gnu/packages/connman.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/direct-connect.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/elf.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/enlightenment.scm, gnu/packages/finance.scm, gnu/packages/fltk.scm, gnu/packages/fontutils.scm, gnu/packages/freedesktop.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/gtk.scm, gnu/packages/ham-radio.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/kde-frameworks.scm, gnu/packages/key-mon.scm, gnu/packages/libffi.scm, gnu/packages/libreoffice.scm, gnu/packages/libusb.scm, gnu/packages/lirc.scm, gnu/packages/logging.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/medical.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nutrition.scm, gnu/packages/openldap.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/polkit.scm, gnu/packages/protobuf.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/qt.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/search.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/simulation.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wicd.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm: Update module references.
* gnu: r-rgraphviz: Update to 2.26.0.Ricardo Wurmus2018-11-07
| | | | * gnu/packages/graph.scm (r-rgraphviz): Update to 2.26.0.
* gnu: python-plotly: Add python-pandas to inputs.Ricardo Wurmus2018-10-05
| | | | | * gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add python-pandas.
* Add missing use-modules clause.Ricardo Wurmus2018-09-06
| | | | | | | | This is a follow-up to commit 5dfe491290b14a1ee7efd70f9cd083969c24e1c2. Sorry! * gnu/packages/bioinformatics.scm, gnu/packages/graph.scm: Use (gnu packages bioconductor).
* gnu: r-igraph: Update to 1.2.2.Ricardo Wurmus2018-09-05
| | | | * gnu/packages/graph.scm (r-igraph): Update to 1.2.2.
* gnu: r-diffusionmap: Update to 1.1-0.1.Ricardo Wurmus2018-09-05
| | | | * gnu/packages/graph.scm (r-diffusionmap): Update to 1.1-0.1.
* gnu: r-rgraphviz: Update to 2.24.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/graph.scm (r-rgraphviz): Update to 2.24.0.
* gnu: r-igraph: Update to 1.2.1.Ricardo Wurmus2018-04-21
| | | | | | * gnu/packages/graph.scm (r-igraph): Update to 1.2.1. [inputs]: Add glpk and zlib. [propagated-inputs]: Remove r-irlba.
* gnu: python-plotly: Update to 2.4.1.Tobias Geerinckx-Rice2018-03-27
| | | | * gnu/packages/graph.scm (python-plotly): Update to 2.4.1.
* gnu: Use HTTPS for r-project.org home pages.Tobias Geerinckx-Rice2018-03-17
| | | | | | | | | | * gnu/packages/cran.scm (r-performanceanalytics, r-qap, r-gclus, r-leaps) (r-splus2r, r-ifultools, r-sapa, r-quantmod, r-tseries, r-wmtsa, r-fractal) (r-urca, r-trend, r-expm, r-complexplus, r-powerplus, r-signal, r-abind) (r-prroc)[home-page]: Use HTTPS. * gnu/packages/emacs.scm (emacs-ess)[home-page]: Likewise. * gnu/packages/graph.scm (r-diffusionmap)[home-page]: Likewise. * gnu/packages/statistics.scm (r-minimal, r-quantreg)[home-page]: Likewise.
* gnu: Add python-plotly.Leo Famulari2018-03-15
| | | | * gnu/packages/graph.scm (python-plotly, python2-plotly): New variables.
* gnu: Add r-rbiofabric.Ricardo Wurmus2018-03-02
| | | | * gnu/packages/graph.scm (r-rbiofabric): New variable.
* gnu: Add r-diffusionmap.Ricardo Wurmus2017-12-18
| | | | * gnu/packages/graph.scm (r-diffusionmap): New variable.
* gnu: r-rgraphviz: Update to 2.22.0.Ricardo Wurmus2017-11-07
| | | | * gnu/packages/graph.scm (r-rgraphviz): Update to 2.22.0.
* gnu: Add r-rgraphviz.Ricardo Wurmus2017-10-22
| | | | * gnu/packages/graph.scm (r-rgraphviz): New variable.
* gnu: r-igraph: Move to (gnu packages graph).Ricardo Wurmus2017-08-09
| | | | | * gnu/packages/statistics.scm (r-igraph): Move from here... * gnu/packages/graph.scm (r-igraph): ...to here.
* gnu: Add python-igraph.Ricardo Wurmus2017-08-09
| | | | * gnu/packages/graph.scm (python-igraph): New variable.
* gnu: Add igraph.Ricardo Wurmus2017-08-09
* gnu/packages/graph.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
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