| Commit message (Expand) | Author | Age |
|---|
| * | build-system/gnu: Add 'bootstrap' phase.•••This factorizes what has become a widespread idiom.
* guix/build/gnu-build-system.scm (%bootstrap-scripts): New variable.
(bootstrap): New procedure.
(%standard-phases): Add it after 'unpack'.
* guix/build/ant-build-system.scm (%standard-phases): Delete 'bootstrap.
* guix/build/asdf-build-system.scm (%standard-phases/source)
(%standard-phases): Likewise.
* guix/build/cargo-build-system.scm (%standard-phases): Likewise.
* guix/build/cmake-build-system.scm (%standard-phases): Likewise.
* guix/build/dub-build-system.scm (%standard-phases): Likewise.
* guix/build/emacs-build-system.scm (%standard-phases): Likewise.
* guix/build/font-build-system.scm (%standard-phases): Likewise.
* guix/build/go-build-system.scm (%standard-phases): Likewise.
* guix/build/haskell-build-system.scm (%standard-phases): Likewise.
* guix/build/minify-build-system.scm (%standard-phases): Likewise.
* guix/build/ocaml-build-system.scm (%standard-phases): Likewise.
* guix/build/perl-build-system.scm (%standard-phases): Likewise.
* guix/build/python-build-system.scm (%standard-phases): Likewise.
* guix/build/r-build-system.scm (%standard-phases): Likewise.
* guix/build/ruby-build-system.scm (%standard-phases): Likewise.
* guix/build/scons-build-system.scm (%standard-phases): Likewise.
* guix/build/texlive-build-system.scm (%standard-phases): Likewise.
* guix/build/waf-build-system.scm (%standard-phases): Likewise.
* gnu/packages/audio.scm (faad2)[arguments]: Replace 'bootstrap.
(soundtouch, cuetools, bluez-alsa): Remove 'arguments'.
(cava)[arguments]: Replace 'bootstrap.
* gnu/packages/backup.scm (rdup): Remove 'bootstrap.
* gnu/packages/bioinformatics.scm (seek)[arguments]: Replace
'bootstrap.
* gnu/packages/bioinformatics.scm (htslib-for-sambamba): Remove
'arguments'.
* gnu/packages/ci.scm (hydra, cuirass): Remove 'bootstrap'.
* gnu/packages/crypto.scm (libb2): Remove #:phases.
* gnu/packages/databases.scm (guile-wiredtiger): Likewise.
* gnu/packages/debug.scm (stress-make): Remove 'bootstrap'.
* gnu/packages/documentation.scm (asciidoc): Likewise.
* gnu/packages/fontutils.scm (libuninameslist): Remove 'arguments'.
* gnu/packages/ftp.scm (weex): Remove 'arguments'.
* gnu/packages/game-development.scm (ois): Remove 'arguments'.
* gnu/packages/games.scm (pioneer): Remove 'bootstrap.
* gnu/packages/gnome.scm (vte-ng, byzanz): Replace 'bootstrap.
(arc-theme): Remove 'arguments'.
(faba-icon-theme): Remove 'bootstrap.
(arc-icon-theme): Remove 'arguments'.
* gnu/packages/gnunet.scm (guile-gnunet): Likewise.
* gnu/packages/gtk.scm (guile-rsvg): Likewise.
* gnu/packages/guile.scm (mcron2): Remove 'bootstrap.
(guile-bash): Remove #:phases.
(guile-git): Remove 'bootstrap.
(guile-syntax-highlight): Remove 'arguments'.
(guile-sjson): Likewise.
* gnu/packages/java.scm (classpath-devel): Remove 'bootstrap.
* gnu/packages/kodi.scm (libdvdnav/kodi)
(libdvdread/kodi, libdvdcss/kodi): Likewise.
* gnu/packages/libreoffice.scm (hunspell): Remove 'arguments'.
* gnu/packages/libusb.scm (hidapi): Likewise.
* gnu/packages/linux.scm (bridge-utils): Rename 'bootstrap' to
'patch-stuff'; move it before 'bootstrap', without autoreconf
invocation.
(eudev): Rename 'bootstrap' to 'patch-file-names', without 'autogen.sh'
invocation; move it before 'bootstrap.
(gpm): Replace 'bootstrap'.
(f2fs-tools): Remove 'arguments'.
(rng-tools): Remove #:phases.
* gnu/packages/messaging.scm (hexchat): Rename 'bootstrap' to
'copy-intltool-makefile'; remove "autoreconf" invocation and move before
'bootstrap'.
(libmesode): Remove 'arguments'.
(libstrophe): Likewise.
* gnu/packages/microcom.scm (microcom): Likewise.
* gnu/packages/networking.scm (libnet): Remove 'bootstrap.
* gnu/packages/onc-rpc.scm (libnsl): Remove 'arguments'.
* gnu/packages/package-management.scm (guix): Replace 'bootstrap.
* gnu/packages/sawfish.scm (librep): Remove 'arguments'.
* gnu/packages/version-control.scm (findnewest): Likewise.
* gnu/packages/video.scm (liba52, handbrake, motion): Replace
'bootstrap.
* gnu/packages/web.scm (fcgiwrap): Remove #:phases.
(tidy): Replace 'bootstrap.
(gumbo-parser): Remove #:phases.
* gnu/packages/wget.scm (wget2): Replace 'bootstrap.
* gnu/packages/wm.scm (i3lock-color): Remove #:phases.
* gnu/packages/xdisorg.scm (xclip): Likewise.
* gnu/packages/xml.scm (libxls): Replace 'bootstrap'.
* gnu/packages/xorg.scm (xf86-video-freedreno)
(xf86-video-intel): Remove #:phases.
* gnu/packages/zile.scm (zile-on-guile): Replace 'bootstrap.
| Ludovic Courtès | 2018-03-11 |
| * | gnu: r-qtl: Update to 1.42-8.•••* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.42-8.
| Ricardo Wurmus | 2018-02-22 |
| * | gnu: r-delayedmatrixstats: Update to 1.0.3.•••* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.0.3.
| Ricardo Wurmus | 2018-02-19 |
| * | gnu: r-scater: Update to 1.6.3.•••* gnu/packages/bioinformatics.scm (r-scater): Update to 1.6.3.
| Ricardo Wurmus | 2018-02-19 |
| * | gnu: r-gviz: Update to 1.22.3.•••* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.3.
| Ricardo Wurmus | 2018-02-19 |
| * | gnu: r-gprofiler: Update to 0.6.4.•••* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.4.
| Ricardo Wurmus | 2018-02-19 |
| * | gnu: r-ensembldb: Update to 2.2.2.•••* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.2.2.
| Ricardo Wurmus | 2018-02-19 |
| * | gnu: r-seurat: Update to 2.2.1.•••* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.2.1.
[propagated-inputs]: Remove r-nmf; add r-metap.
| Ricardo Wurmus | 2018-02-19 |
| * | gnu: r-qtl: Update to 1.42-7.•••* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.42-7.
| Ricardo Wurmus | 2018-02-19 |
| * | gnu: r-genomicranges: Update to 1.30.2.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.2.
| Ricardo Wurmus | 2018-02-19 |
| * | gnu: r-getopt: Update to 1.20.2.•••* gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.2.
| Ricardo Wurmus | 2018-02-19 |
| * | gnu: r-bookdown: Update to 0.7.•••* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.7.
[propagated-inputs]: Add r-tinytex.
| Ricardo Wurmus | 2018-02-19 |
| * | Merge branch 'master' into core-updates | Ricardo Wurmus | 2018-02-18 |
| |\ |
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| | * | gnu: vsearch: Update to 2.7.1.•••* gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.1.
| Ben Woodcroft | 2018-02-17 |
| * | | Merge branch 'master' into core-updates | Mark H Weaver | 2018-02-16 |
| |\| |
|
| | * | gnu: diamond: Update to 0.9.18.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.18.
| Ben Woodcroft | 2018-02-16 |
| * | | gnu: Add python-loompy.•••* gnu/packages/bioinformatics.scm (python-loompy): New variable.
| Ricardo Wurmus | 2018-02-15 |
| * | | gnu: Add r-dropbead.•••* gnu/packages/bioinformatics.scm (r-dropbead): New variable.
| Ricardo Wurmus | 2018-02-15 |
| * | | gnu: Add r-delayedmatrixstats.•••* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): New variable.
| Ricardo Wurmus | 2018-02-15 |
| * | | Merge branch 'master' into core-updates | Mark H Weaver | 2018-02-14 |
| |\| |
|
| | * | gnu: vsearch: Update to 2.7.0.•••* gnu/packages/bioinformatics.scm (vsearch): Update to 2.7.0.
| Ben Woodcroft | 2018-02-14 |
| * | | Merge branch 'master' into core-updates | Mark H Weaver | 2018-02-13 |
| |\| |
|
| | * | gnu: r-gprofiler: Update to 0.6.3.•••* gnu/packages/bioinformatics.scm (r-gprofiler): Update to 0.6.3.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-ensembldb: Update to 2.2.1.•••* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.2.1.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-gage: Update to 2.28.2.•••* gnu/packages/bioinformatics.scm (r-gage): Update to 2.28.2.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-keggrest: Update to 1.18.1.•••* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.18.1.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-seurat: Update to 2.2.0.•••* gnu/packages/bioinformatics.scm (r-seurat): Update to 2.2.0.
[propagated-inputs]: Remove r-ggjoy; add r-rcppeigen and r-ggridges.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-msnbase: Update to 2.4.2.•••* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.2.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-methylkit: Update to 1.4.1.•••* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.4.1.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-gkmsvm: Update to 0.79.0.•••* gnu/packages/bioinformatics.scm (r-gkmsvm): Update to 0.79.0.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-wgcna: Update to 1.62.•••* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.62.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-genomation: Update to 1.11.3.•••* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.11.3.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-genomicfeatures: Update to 1.30.3.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.3.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-rtracklayer: Update to 1.38.3.•••* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.3.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-summarizedexperiment: Update to 1.8.1.•••* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.8.1.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-biomart: Update to 2.34.2.•••* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.2.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-genomicranges: Update to 1.30.1.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.1.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-limma: Update to 3.34.8.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.8.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-variantannotation: Update to 1.24.5.•••* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.5.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-edger: Update to 3.20.8.•••* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.8.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-bookdown: Update to 0.6.•••* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.6.
[propagated-inputs]: Add r-xfun and ghc-pandoc.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: r-vegan: Update to 2.4-6.•••* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-6.
| Ricardo Wurmus | 2018-02-13 |
| | * | gnu: Add r-scran.•••* gnu/packages/bioinformatics.scm (r-scran): New variable.
| Ricardo Wurmus | 2018-02-12 |
| | * | gnu: Add r-scater.•••* gnu/packages/bioinformatics.scm (r-scater): New variable.
Co-authored-by: Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com>
| Ricardo Wurmus | 2018-02-12 |
| | * | gnu: Add r-singlecellexperiment.•••* gnu/packages/bioinformatics.scm (r-singlecellexperiment): New variable.
| Ricardo Wurmus | 2018-02-12 |
| | * | gnu: Add r-beachmat.•••* gnu/packages/bioinformatics.scm (r-beachmat): New variable.
| Ricardo Wurmus | 2018-02-12 |
| | * | gnu: Add r-rhdf5lib.•••* gnu/packages/bioinformatics.scm (r-rhdf5lib): New variable.
| Ricardo Wurmus | 2018-02-12 |
| | * | gnu: Add r-hdf5array.•••* gnu/packages/bioinformatics.scm (r-hdf5array): New variable.
| Ricardo Wurmus | 2018-02-11 |
| * | | gnu: multiqc: Update to 1.4.•••* gnu/packages/bioinformatics.scm (multiqc): Update to 1.4.
[propagated-inputs]: Remove PYTHON-ENUM34.
| Marius Bakke | 2018-02-07 |
| * | | Merge branch 'master' into core-updates | Mark H Weaver | 2018-02-03 |
| |\| |
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