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* gnu: r-destiny: Add missing input.base-for-series-3561Ricardo Wurmus2020-04-16
| | | | * gnu/packages/bioconductor.scm (r-destiny)[native-inputs]: Add r-nbconvertr.
* gnu: r-bacon: Add missing input.Ricardo Wurmus2020-04-16
| | | | * gnu/packages/bioconductor.scm (r-bacon)[native-inputs]: Add r-knitr.
* gnu: r-bioassayr: Add missing input.Ricardo Wurmus2020-04-16
| | | | * gnu/packages/bioconductor.scm (r-bioassayr)[native-inputs]: Add r-knitr.
* gnu: r-activepathways: Add missing input.Ricardo Wurmus2020-04-16
| | | | | * gnu/packages/bioconductor.scm (r-activepathways)[native-inputs]: Add r-knitr.
* gnu: r-dose: Add missing input.Ricardo Wurmus2020-04-16
| | | | * gnu/packages/bioconductor.scm (r-dose)[native-inputs]: Add r-knitr.
* gnu: r-atacseqqc: Update to 1.10.4.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.4.
* gnu: r-a4base: Update to 1.34.1.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.1.
* gnu: r-varianttools: Update to 1.28.1.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.1.
* gnu: r-genomicinteractions: Update to 1.20.3.Ricardo Wurmus2020-04-14
| | | | * gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.3.
* gnu: r-wavcluster: Fix grammar of "allows to integrate" to "integrates".Vagrant Cascadian2020-04-12
| | | | * gnu/packages/bioconductor (r-wavcluster): Fix grammar.
* gnu: r-aucell: Fix grammar of "allows to identify" to "identifies".Vagrant Cascadian2020-04-12
| | | | * gnu/packages/bioconductor (r-aucell): Fix grammar.
* gnu: r-fgsea: Various grammar and spelling fixes.Vagrant Cascadian2020-04-12
| | | | | * gnu/packages/bioconductor (r-fgsea): Fix spelling of "standard". Fix grammar of "allows to make" to "makes".
* gnu: r-biocworkflowtools: Update to 1.12.1.Ricardo Wurmus2020-04-01
| | | | | * gnu/packages/bioconductor.scm (r-biocworkflowtools): Update to 1.12.1. [native-inputs]: Add r-knitr.
* gnu: r-mixomics: Update to 6.10.9.Ricardo Wurmus2020-04-01
| | | | | * gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.9. [native-inputs]: Add r-knitr.
* gnu: r-cytoml: Update to 1.12.1.Ricardo Wurmus2020-04-01
| | | | | * gnu/packages/bioconductor.scm (r-cytoml): Update to 1.12.1. [native-inputs]: Add r-knitr.
* gnu: r-gofuncr: Update to 1.6.1.Ricardo Wurmus2020-04-01
| | | | | * gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.1. [native-inputs]: Add r-knitr.
* gnu: r-genomicinteractions: Update to 1.20.2.Ricardo Wurmus2020-04-01
| | | | | * gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.2. [native-inputs]: Add r-knitr.
* gnu: r-multiassayexperiment: Update to 1.12.6.Ricardo Wurmus2020-03-27
| | | | * gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
* gnu: r-mast: Add r-knitr to native inputs.Ricardo Wurmus2020-03-25
| | | | * gnu/packages/bioconductor.scm (r-mast)[native-inputs]: Add r-knitr.
* gnu: r-multiassayexperiment: Update to 1.12.5.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5. [native-inputs]: Add r-knitr.
* gnu: r-bigpint: Update to 1.2.2.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2. [native-inputs]: Add r-knitr.
* gnu: r-biosigner: Update to 1.14.4.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
* gnu: r-gosemsim: Update to 2.12.1.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1. [native-inputs]: Add r-knitr.
* gnu: r-biocpkgtools: Update to 1.4.6.Ricardo Wurmus2020-03-19
| | | | | | | * gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.4.6. [propagated-inputs]: Add r-biocfilecache, r-rappdirs, r-rlang, and r-tidyselect. [native-inputs]: Add r-knitr.
* gnu: r-biosigner: Update to 1.14.2.Ricardo Wurmus2020-03-19
| | | | | * gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.2. [native-inputs]: Remove r-rmarkdown, pandoc, and pandoc-citeproc.
* gnu: r-htqpcr: Update home page.Tobias Geerinckx-Rice2020-03-17
| | | | | * gnu/packages/bioconductor.scm (r-htqpcr)[home-page]: Use HTTPS link to PDF paper.
* gnu: r-cicero: Update to 1.4.4.Ricardo Wurmus2020-03-12
| | | | | * gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.4. [native-inputs]: Add r-knitr.
* gnu: r-ggcyto: Update to 1.14.1.Ricardo Wurmus2020-03-12
| | | | | * gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.14.1. [native-inputs]: Add r-knitr.
* gnu: r-mlinterfaces: Update to 1.66.5.Ricardo Wurmus2020-03-12
| | | | * gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.5.
* gnu: r-atacseqqc: Update to 1.10.3.Ricardo Wurmus2020-03-08
| | | | | * gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3. [native-inputs]: Add r-knitr.
* gnu: r-multiassayexperiment: Update to 1.12.4.Ricardo Wurmus2020-03-07
| | | | * gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
* gnu: r-depecher: Update to 1.2.2.Ricardo Wurmus2020-03-07
| | | | | * gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2. [native-inputs]: Add r-knitr.
* gnu: r-xcms: Update to 3.8.2.Ricardo Wurmus2020-03-07
| | | | * gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
* gnu: r-yamss: Update to 1.12.1.Ricardo Wurmus2020-03-07
| | | | * gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
* gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0.Tobias Geerinckx-Rice2020-03-02
| | | | * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
* gnu: r-multiassayexperiment: Update to 1.12.3.Ricardo Wurmus2020-03-01
| | | | * gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
* gnu: r-cicero: Update to 1.4.2.Ricardo Wurmus2020-03-01
| | | | * gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
* gnu: r-mlinterfaces: Update to 1.66.4.Ricardo Wurmus2020-03-01
| | | | * gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
* gnu: r-biocneighbors: Update to 1.4.2.Ricardo Wurmus2020-03-01
| | | | * gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
* gnu: r-chippeakanno: Update to 3.20.1.Ricardo Wurmus2020-03-01
| | | | * gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
* gnu: r-gkmsvm: Update to 0.80.0.Ricardo Wurmus2020-03-01
| | | | | | * gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0. [propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb, r-iranges, r-rtracklayer, and r-s4vectors.
* gnu: Add r-bsgenome-hsapiens-ncbi-grch38.Mădălin Ionel Patrașcu2020-02-25
| | | | | | * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-genomicinteractions: Update to 1.20.1.Ricardo Wurmus2020-02-22
| | | | * gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.1.
* gnu: r-cicero: Update to 1.4.1.Ricardo Wurmus2020-02-22
| | | | | * gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.1. [propagated-inputs]: Add r-tidyr.
* gnu: r-ggm: Move to (gnu packages bioconductor).Ricardo Wurmus2020-02-22
| | | | | * gnu/packages/cran.scm (r-ggm): Move this variable from here... * gnu/packages/bioconductor.scm (r-ggm): ...to here.
* gnu: r-depecher: Update to 1.2.1.Ricardo Wurmus2020-02-19
| | | | * gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.1.
* gnu: r-mixomics: Update to 6.10.8.Ricardo Wurmus2020-02-19
| | | | * gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.8.
* gnu: r-rsubread: Update to 2.0.1.Ricardo Wurmus2020-02-19
| | | | * gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.1.
* gnu: r-atacseqqc: Update to 1.10.2.Ricardo Wurmus2020-02-19
| | | | * gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.2.
* gnu: r-heatplus: Update to 2.32.1.Ricardo Wurmus2020-02-19
| | | | * gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.1.
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