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* gnu: pugixml: Update to 1.10.Tobias Geerinckx-Rice2019-12-03
| | | | | | | * gnu/packages/xml.scm (pugixml): Update to 1.10. [source]: Remove obsolete patch. * gnu/packages/patches/pugixml-versioned-libdir.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: python-scikit-image: Move to (gnu packages python-science).Ricardo Wurmus2019-12-02
| | | | | | | * gnu/packages/python-xyz.scm (python-scikit-image, python2-scikit-image): Move these two from here... * gnu/packages/python-science.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu: thermald: Update to 1.9.Tobias Geerinckx-Rice2019-12-01
| | | | | | | * gnu/packages/admin.scm (thermald): Update to 1.9. [source]: Remove patch. * packages/patches/thermald-make-int-max32-visible.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: fcgi: Update to 2.4.2.Tobias Geerinckx-Rice2019-12-01
| | | | | | | | | * gnu/packages/web.scm (fcgi): Update to 2.4.2. [source]: Use GIT-FETCH and GIT-FILE-NAME. Remove obsolete patches. [native-inputs]: Add autoconf, automake, and libtool. * gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch, gnu/packages/patches/fcgi-2.4.0-poll.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: retroarch: Disable the on-line updater.Tobias Geerinckx-Rice2019-11-30
| | | | | | | | Addresses <http://issues.guix.gnu.org/issue/38360>. * gnu/packages/emulators.scm (retroarch)[source]: Add patch and snippet. * packages/patches/retroarch-disable-online-updater.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: ocaml-piqilib: Update to 0.6.15.Julien Lepiller2019-11-30
| | | | | | | | | * gnu/packages/ocaml.scm (ocaml-piqilib): Update to 0.6.15. [source]: Remove patch. [native-inputs]: Remove camlp4. [propagated-inputs]: Replace ulex with sedlex. * gnu/packages/patches/ocaml-piqilib-Update-base64.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: openmpi: Increase priority of the PSM component.Ludovic Courtès2019-11-29
| | | | | | | | * gnu/packages/patches/openmpi-psm2-priority.patch: Rename to... * gnu/packages/patches/openmpi-mtl-priorities.patch: ... this. Add hunk to change the priority of PSM. * gnu/packages/mpi.scm (openmpi)[source]: Adjust accordingly. * gnu/local.mk (dist_patch_DATA): Likewise.
* gnu: xinetd: Update to 2.3.15.4 [fix build].Tobias Geerinckx-Rice2019-11-29
| | | | | | | | | | | * gnu/packages/web.scm (xinetd): Update to 2.3.15.4. [source]: Switch to openSUSE (and Debian) maintenance fork. Remove obsolete patches. [native-inputs]: Add automake, autoconf, libtool, and pkg-config. [home-page]: Update. * gnu/packages/patches/xinetd-CVE-2013-4342.patch, gnu/packages/patches/xinetd-fix-fd-leak.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
* Revert "gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Ricardo Wurmus2019-11-28
| | | | | | stumpwm to wm." This reverts commit abf43a67d5929bf279edce3e790ef1348dda32a5 as it broke "guix pull".
* gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.Pierre Neidhardt2019-11-28
| | | | | | | | | | | | | * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
* gnu: psm: Disable memory statistics code.Ludovic Courtès2019-11-28
| | | | | | * gnu/packages/patches/psm-disable-memory-stats.patch: New file. * gnu/packages/linux.scm (psm)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
* services: Add pam-mount.Guillaume Le Vaillant2019-11-28
| | | | | | | | * gnu/services/pam-mount.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (PAM Mount Service): New subsection. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: feh: Adapt tests for imlib2 1.6.Pierre Langlois2019-11-28
| | | | | | | | * gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: New file. * gnu/packages/image-viewers.scm (feh)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: Add pam-mount.Guillaume Le Vaillant2019-11-26
| | | | | | | | * gnu/packages/admin.scm (pam-mount): New variable. * gnu/packages/patches/pam-mount-luks2-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: xsane: Fix snprintf buffer length.Tobias Geerinckx-Rice2019-11-22
| | | | | | * gnu/packages/scanner.scm (xsane)[source]: Add patch. * gnu/packages/patches/xsane-fix-snprintf-buffer-length.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: Register xsane patches.Tobias Geerinckx-Rice2019-11-22
| | | | | | This follows up on commit a608666d74f156819cecfabaf72290726d7964e6. * gnu/local.mk (dist_patch_DATA): Add missing patches.
* gnu: libseccomp: Fix build on AArch64.Ludovic Courtès2019-11-22
| | | | | | | | This is a followup to d100d5d5449eabd65e9c26081b7620a3d342c9eb. * gnu/packages/patches/libseccomp-open-aarch64.patch: New file. * gnu/packages/linux.scm (libseccomp)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: hexchat: Fix crash on exit.Julien Lepiller2019-11-21
| | | | | | * gnu/packages/patches/hexchat-crash-exit.patch: New file. * gnu/packages/hexchat.scm (orgin): Add patch. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: ghc-haddock-api: Update to 2.22.0.Timothy Sample2019-11-20
| | | | | | | | | * gnu/packages/patches/ghc-haddock-api-fix-haddock.patch: New file. * gnu/local.mk: Add it. * gnu/packages/haskell-xyz.scm (ghc-haddock-api): Update to 2.22.0. [source]: Use the new patch. [arguments]: Change the 'update-constraints' phase to allow newer versions of 'QuickCheck' and 'hspec'.
* gnu: elm-compiler: Fix Cabal dependency constraints.Timothy Sample2019-11-20
| | | | | | | | | | | | | This package used a patch to update the Cabal version constraints for 'language-glsl'. This is now done in a phase for consistency with other Haskell packages. * gnu/packages/elm.scm (elm-compiler): Add a phase that updates the Cabal file to allow for newer versions of 'ansi-terminal', 'containers', 'http-client', 'language-glsl', and 'network'. [source]: Remove 'elm-compiler-relax-glsl-bound.patch'. * gnu/packages/patches/elm-compiler-relax-glsl-bound.patch: Delete file. * gnu/local.mk: Remove it.
* gnu: ghc-microlens-aeson: Patch tests for i686-linux.Timothy Sample2019-11-20
| | | | | | * gnu/packages/patches/ghc-microlens-aeson-fix-tests.patch: New file. * gnu/local.mk: Add it. * gnu/packages/haskell-xyz.scm (ghc-microlens-aeson): Use it.
* gnu: ghc-pandoc: Update to 2.7.3.Timothy Sample2019-11-20
| | | | | | | | | | | | | * gnu/packages/haskell-xyz.scm (ghc-pandoc): Update to 2.7.3. [source]: Add patches to fix tests. [arguments]: Remove '#:phases'. [inputs]: Remove 'ghc-deepseq-generics', 'ghc-old-locale', and 'ghc-yaml'; add 'ghc-hslua-module-system', 'ghc-hsyaml', 'ghc-ipynb', and 'ghc-unicode-transforms'. [native-inputs]: Add 'ghc-tasty-lua'. * gnu/packages/patches/ghc-pandoc-fix-html-tests.patch: New file. * gnu/packages/patches/ghc-pandoc-fix-latex-test.patch: New file. * gnu/local.mk: Add them.
* gnu: ghc-haddock-library: Update to 1.7.0.Timothy Sample2019-11-20
| | | | | | | | | | | | | The new source tarball does not have bundled dependencies, so it does not need to be patched. * gnu/packages/haskell-xyz.scm (ghc-haddock-library): Update to 1.7.0. [source]: Remove 'patches', 'modules' and 'snippet'. [arguments]: Update the 'relax-test-suite-dependencies' phase to allow newer versions of 'hspec' and 'QuickCheck'; remove the 'add-examples-directory' phase. * gnu/packages/patches/ghc-haddock-library-unbundle.patch: Delete file. * gnu/local.mk: Remove it.
* gnu: ghc-hpack: Update to 0.31.2.Timothy Sample2019-11-20
| | | | | | | | * gnu/packages/haskell-xyz.scm (ghc-hpack): Update to 0.31.2. [source]: Use a patch to fix tests. [inputs]: Add 'ghc-infer-license'. * gnu/packages/patches/ghc-hpack-fix-tests.patch: New file. * gnu/local.mk: Add it.
* gnu: ghc-monad-par: Add a patch to fix tests on GHC 8.6.Timothy Sample2019-11-20
| | | | | | * gnu/packages/patches/ghc-monad-par-fix-tests.patch: New file. * gnu/local.mk: Add it. * gnu/packages/haskell-xyz.scm (ghc-monad-par): Use it.
* gnu: ghc-diff: Patch to work with newer QuickCheck.Timothy Sample2019-11-20
| | | | | | * gnu/packages/patches/ghc-diff-swap-cover-args.patch: New file. * gnu/local.mk: Add it. * gnu/packages/haskell-xyz.scm (ghc-diff): Use it.
* gnu: Register python-3.8 patches.Efraim Flashner2019-11-20
| | | | | | | This is a follow-up to af6a9fc27622ea8a342fe18c8604f2fe64a04e68. * gnu/local.mk (dist_patch_DATA): Register python-3.8-search-paths.patch, python-3.8-fix-tests.patch.
* gnu: Add minisat.Robert Smith2019-11-19
| | | | | | | | | * gnu/packages/patches/minisat-friend-declaration.patch: New file. * gnu/packages/patches/minisat-install.patch: New file. * gnu/local.mk (dist_patch_DATA): Add both files above. * gnu/packages/maths.scm (minisat): New exported variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* gnu: ucx: Avoid relying on /sys/class/net.Ludovic Courtès2019-11-16
| | | | | | | | | | This fixes test failures of packages that use Open MPI, whereby UCX would error out due to /sys/class/net being unavailable in the build chroot that the daemon sets up. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file. * gnu/packages/fabric-management.scm (ucx)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: tomb: Update to 2.7.Eric Bavier2019-11-15
| | | | | | | * gnu/packages/patches/tomb-fix-errors-on-open.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/crypto.scm (tomb): Update to 2.7. [source]: Use the patch.
* gnu: openmpi: Raise the priority of the PSM2 component.Ludovic Courtès2019-11-15
| | | | | | | | | This allows us to get better performance by default on machines with OmniPath hardware. * gnu/packages/patches/openmpi-psm2-priority.patch: New file. * gnu/packages/mpi.scm (openmpi)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: Add java-svg-salamander.Julien Lepiller2019-11-13
| | | | | | * gnu/packages/java.scm (java-svg-salamander): New variable. * gnu/packages/patches/java-svg-salamander-Fix-non-det.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: patchelf: Update to 0.10.Efraim Flashner2019-11-11
| | | | | | | | | | | * gnu/packages/elf.scm (patchelf): Update to 0.10. [source]: Remove patches. [arguments]: Remove patch/rework-for-arm phase. Add phase to modify tests for our modified GCC package. [native-inputs]: Add gcc:lib. * gnu/packages/patches/patchelf-page-size.patch, * gnu/packages/patches/patchelf-rework-for-arm.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: fribidi: Fix CVE-2019-18397.Efraim Flashner2019-11-09
| | | | | | | * gnu/packages/fribidi.scm (fribidi): Replace with fribidi/fixed. (fribidi/fixed): New variable. * gnu/packages/patches/fribidi-CVE-2019-18397.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: Add delft-icon-theme.Leo Prikler2019-11-08
| | | | | | | | * /gnu/packages/gnome-xyz.scm: New file. (delft-icon-theme): New variable. * /gnu/local.mk: Add it. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* gnu: cpio: Update to 2.13 [fixes CVE-2015-1197, CVE-2019-14866].Ludovic Courtès2019-11-06
| | | | | | * gnu/packages/cpio.scm (cpio): Update to 2.13. Remove "cpio-CVE-2016-2037.patch". * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: libvirt: Update to 5.8.0.Miguel Ángel Arruga Vivas2019-11-05
| | | | | | | | | | | | * gnu/local.mk (dist_patch_DATA): Add new patch file. * gnu/packages/patches/libvirt-create-machine-cgroup.patch: New patch, submitted to upstream for upstream bug 1760233. * gnu/packages/virtualization.scm (libvirt): Update version to 5.8.0. Include patch. Avoid execution of failing tests qemuxml2argvtest and qemuhotplugtest. Replace python by python-wrapper to avoid warnings on patch-shebangs phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add missing patch to locale.mk.Jonathan Brielmaier2019-11-05
| | | | | | | | | The patch was introduced in commit 2be878d8e54057980121e4c659ca48317b79970e. * gnu/local.mk (dist_patch_DATA): Add "python-pep8-stdlib-tokenize-compat.patch". Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
* gnu: docker: Adjust tests for changes in go.Oleg Pykhalov2019-11-03
| | | | | | * gnu/packages/patches/docker-adjust-tests-for-changes-in-go.patch: New file. * gnu/local.mk (dist_patch_DATA): Use this. * gnu/packages/docker.scm (docker): Use this.
* gnu: vlc: Fix build.Nicolas Goaziou2019-11-02
| | | | | | * gnu/packages/patches/vlc-fix-test_libvlc_slaves.patch: New file. * gnu/local.mk (dist_patch_DATA): Reference new file. * gnu/packages/video.scm (vlc): Apply patch.
* gnu: Add udiskie.Guillaume Le Vaillant2019-10-30
| | | | | | * gnu/packages/freedesktop.scm (udiskie): New variable. * gnu/packages/patches/udiskie-no-appindicator.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: libreoffice: Update to 6.2.8.2.Efraim Flashner2019-10-29
| | | | | | | | | | | | * gnu/packages/libreoffice.scm (libreoffice): Update to 6.2.8.2. [sources]: Remove libreoffice-boost.patch, libreoffice-orcus patch, libreoffice-mdds patch. [inputs]: Add fontforge, mariadb. [arguments]: Remove substitution checking for mdds and orcus versions. From configure-flags, remove outdated flags, add flag to build font file. * gnu/packages/patches/libreoffice-boost.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: icecat: Include generally-useful fixes in the source tarball.Mark H Weaver2019-10-29
| | | | | | | | | | | | | | | | This commit moves some important fixes into a patch applied to the upstream gnuzilla git repository, whereas previously they were applied in such a way that only benefitted Guix users. * gnu/packages/patches/icecat-default-search-ddg.patch, gnu/packages/patches/icecat-disable-sync.patch: Delete files. * gnu/packages/patches/icecat-gnuzilla-fixes.patch: New file. * gnu/local.mk (dist_patch_DATA): Adapt accordingly. * gnu/packages/gnuzilla.scm (icecat-source): Apply the new patch to the gnuzilla checkout. (icecat)[native-inputs]: Remove deleted patches. [arguments]: In the 'wrap-program' phase, remove MOZ_LEGACY_PROFILES=1 from the wrapper.
* gnu: xorriso: Update to 1.5.2.Efraim Flashner2019-10-28
| | | | | | | | * gnu/packages/cdrom.scm (xorriso): Update to 1.5.2. [source]: Remove patches. * gnu/packages/patches/xorriso-no-partition-table-in-inner-efi.patch, * gnu/packages/patches/xorriso-no-mbr-in-inner-efi.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: dav1d: Update to 0.5.1.Marius Bakke2019-10-27
| | | | | | | * gnu/packages/patches/dav1d-aarch64-symbol-alignment.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/video.scm (dav1d): Update to 0.5.1. [source](patches): Remove.
* gnu: icecat: Update to 68.2.0-guix0-preview1 [security fixes].Mark H Weaver2019-10-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes CVE-2019-11757, CVE-2019-11759, CVE-2019-11760, CVE-2019-11761, CVE-2019-11762, CVE-2019-11763, CVE-2019-11764, and CVE-2019-15903. Note: IceCat 68 has not yet been released by the IceCat project. This is a work-in-progress, and does not currently meet the privacy-respecting standards of the IceCat project. * gnu/packages/patches/icecat-default-search-ddg.patch, gnu/packages/patches/icecat-disable-sync.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (%icecat-version): Update. (mozilla-compare-locales, all-mozilla-locales): New variables. (mozilla-locale): New procedure. (mozilla-locales): New macro. (icecat-source): Add code to populate the l10n directory. Remove the code that copied the l10n directory from an older IceCat source tarball. (icecat)[inputs]: Remove hunspell. [native-inputs]: Comment out previous Guix-specific patches for now. Use the newest rust, cargo, llvm, and clang. Add rust-cbindgen, node, nasm, python 3, icecat-default-search-ddg.patch and icecat-disable-sync.patch. [arguments]: In configure flags: remove "--disable-maintenance-service" and "--enable-system-hunspell", and comment out flags to use system libraries instead of bundled libraries for libevent, libogg, libvorbis, libvpx, harfbuzz, graphite2, and sqlite. Add srfi-34 and srfi-35 to modules. Delete fewer bundled libraries. Adapt the 'patch-source-shebangs' phase. Add a custom 'build' phase that tries the standard 'build' phase up to 5 times. In the 'wrap-program' phase, set MOZ_LEGACY_PROFILES=1 in the environment, and add 'pulseaudio' to the front of LD_LIBRARY_PATH. [description]: Add a warning that this is only a preview release. * gnu/packages/patches/icecat-makeicecat.patch: Adapt.
* gnu: avahi: Fix CVE-2018-1000845 and duplicate CVE-2017-6519.Tobias Geerinckx-Rice2019-10-23
| | | | | | | * gnu/packages/avahi.scm (avahi/fixed): New variable. (avahi)[replacement]: Use it. * gnu/packages/patches/avahi-CVE-2018-1000845.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: Add weasyprint.Hartmut Goebel2019-10-23
| | | | | | | | | Now includs the patch file missed in 73f0ed8dbfde97341716fd8b156907e4ef800873. * gnu/packages/pdf.scm (weasyprint): New variable. * gnu/packages/patches/weasyprint-library-paths.patch: New file. * gnu/local.mk: Add it.
* gnu: Add rust-ansi-term-0.11.Efraim Flashner2019-10-23
| | | | | | * gnu/packages/rust-cbindgen.scm (rust-ansi-term-0.11): New file, new hidden variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
* machine: Implement 'digital-ocean-environment-type'.Jakob L. Kreuze2019-10-22
| | | | | | | | | * gnu/machine/digital-ocean.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (Invoking guix deploy): Add documentation for 'digital-ocean-configuration'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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