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* gnu: icecat: Update bundled graphite2 to 1.3.5 for security fixes.Mark H Weaver2016-02-11
| | | | | | | * gnu/packages/patches/icecat-update-graphite2.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch. Add TODO comment about using the system graphite2 in the future.
* gnu: mit-krb5: Update to 1.13.3; add fixes for CVE-2015-{8629,8630,8631}.Mark H Weaver2016-02-10
| | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/mit-krb5-CVE-2015-2695-pt1.patch, gnu/packages/patches/mit-krb5-CVE-2015-2695-pt2.patch, gnu/packages/patches/mit-krb5-CVE-2015-2696.patch, gnu/packages/patches/mit-krb5-CVE-2015-2697.patch, gnu/packages/patches/mit-krb5-CVE-2015-2698-pt1.patch, gnu/packages/patches/mit-krb5-CVE-2015-2698-pt2.patch: Delete files. * gnu/packages/patches/mit-krb5-CVE-2015-8629.patch, gnu/packages/patches/mit-krb5-CVE-2015-8630.patch, gnu/packages/patches/mit-krb5-CVE-2015-8631.patch, gnu/packages/patches/mit-krb5-init-context-null-spnego.patch: New files. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/mit-krb5.scm (mit-krb5): Update to 1.13.3. [source]: Update URI to download conventional .tar.gz file. Add patches. [native-inputs]: Remove old patches-as-inputs. [arguments]: Remove hacks needed to cope with the older unconventional tarball that contained an inner source tarball and signature: Remove #:modules argument, and the custom 'unpack' and 'apply-patches' phases.
* gnu: xdotools: Update to 3.20150503.1Christopher Allan Webber2016-02-06
| | | | | | * gnu/packages/xdisorg.scm (xdotools): Upgrade to 3.20150503.1. * gnu/packages/patches/xdotool-fix-makefile.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: Add python-pygpgmeChristopher Allan Webber2016-02-06
| | | | | | * gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme): New variables. * gnu/packages/patches/pygpgme-disable-problematic-tests.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: icecat: Re-enable the Ephemeral Diffie-Hellman cipher suites.Mark H Weaver2016-02-06
| | | | | | * gnu/packages/patches/icecat-re-enable-DHE-cipher-suites.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
* gnu: icecat: Update to 38.6.0-gnu1.Mark H Weaver2016-02-05
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/icecat-bug-1146335-pt1.patch, gnu/packages/patches/icecat-bug-1146335-pt2.patch, gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch, gnu/packages/patches/icecat-CVE-2016-1935.patch: Delete files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/gnuzilla.scm (icecat): Update to 38.6.0-gnu1. [source]: Remove patches.
* gnu: jasper: Add fixes for several security flaws.Leo Famulari2016-02-04
| | | | | | | | | | | | | | * gnu/packages/patches/jasper-CVE-2007-2721.patch, gnu/packages/patches/jasper-CVE-2008-3520.patch, gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch, gnu/packages/patches/jasper-CVE-2014-8137.patch, gnu/packages/patches/jasper-CVE-2014-8138.patch, gnu/packages/patches/jasper-CVE-2014-8157.patch, gnu/packages/patches/jasper-CVE-2014-8158.patch, gnu/packages/patches/jasper-CVE-2014-9029.patch, gnu/packages/patches/jasper-CVE-2016-1867.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/image.scm (jasper)[source]: Add patches.
* gnu: perl-io-socket-ssl: Add workaround for OpenSSL-1.0.2f.Mark H Weaver2016-02-04
| | | | | | * gnu/packages/patches/perl-io-socket-ssl-openssl-1.0.2f-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/web.scm (perl-io-socket-ssl)[source]: Add patch.
* guix system: 'reconfigure' loads and starts new services.Ludovic Courtès2016-02-03
| | | | | | | | | | | | | | Partly fixes <http://bugs.gnu.org/22039>. * gnu/services/herd.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. * gnu/services/shepherd.scm (shepherd-service-canonical-name): New procedure. (shepherd-service-file): Export. * guix/scripts/system.scm (upgrade-shepherd-services): New procedure. (switch-to-system): Use it. * guix/ui.scm (info): New procedure. * doc/guix.texi (Invoking guix system): Mention system services.
* gnu: Add emacs-constants.Federico Beffa2016-02-03
| | | | | | * gnu/packages/emacs.scm (emacs-constants): New variable. * gnu/packages/patches/emacs-constants-lisp-like.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: Add emacs-scheme-complete.Federico Beffa2016-02-03
| | | | | | * gnu/packages/emacs.scm (emacs-scheme-complete): New variable. * gnu/packages/patches/emacs-scheme-complete-scheme-r5rs-info.patch: New patch. * gnu-system.am (dist_patch_DATA): Add the new patch.
* gnu: qemu: Update to 2.5.0; add fixes for security flaws.Mark H Weaver2016-02-03
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/qemu-CVE-2015-6855.patch: Delete file. * gnu/packages/patches/qemu-virtio-9p-use-accessor-to-get-thread-pool.patch, gnu/packages/patches/qemu-CVE-2015-8558.patch, gnu/packages/patches/qemu-CVE-2015-8567.patch, gnu/packages/patches/qemu-CVE-2015-8613.patch, gnu/packages/patches/qemu-CVE-2015-8701.patch, gnu/packages/patches/qemu-CVE-2015-8743.patch, gnu/packages/patches/qemu-CVE-2016-1568.patch, gnu/packages/patches/qemu-CVE-2016-1922.patch: New files. * gnu-system.am (dist_patch_DATA): Remove 'qemu-CVE-2015-6855.patch'; add the new patches. * gnu/packages/qemu.scm (qemu): Update to 2.5.0. [source]: Remove old patches and add new ones. [arguments]: Add 'disable-test-qga' phase. (%glib-memory-vtable-patch, %glib-duplicate-test-patch): Remove variables.
* gnu: linux-libre: Update to 4.4.1.Mark H Weaver2016-02-01
| | | | | | | * gnu/packages/patches/linux-libre-CVE-2016-0728.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/linux.scm (linux-libre): Update to 4.4.1. [source]: Remove patch.
* gnu: Add pinball.Eric Bavier2016-01-31
| | | | | | | | | | * gnu/packages/games.scm (pinball): New variable. * gnu/packages/patches/pinball-const-fix.patch, gnu/packages/patches/pinball-cstddef.patch, gnu/packages/patches/pinball-missing-separators.patch, gnu/packages/patches/pinball-src-deps.patch, gnu/packages/patches/pinball-system-ltdl.patch: New patches. * gnu-system.am (dist_patch_DATA): Add them.
* gnu: perl-tk: Update to 804.033.Efraim Flashner2016-01-31
| | | | | | | * gnu/packages/tcl.scm (perl-tk): Update to 804.033. [source]: Remove patch. * gnu/packages/patches/perl-tk-x11-discover.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove patch.
* Rename (gnu services dmd) to (gnu services shepherd).Alex Kost2016-01-29
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/services/dmd.scm: Rename to... * gnu/services/shepherd.scm: ... this. * gnu/system.scm: Use it. * gnu/system/install.scm: Likewise. * gnu/services/xorg.scm: Likewise. * gnu/services/web.scm: Likewise. * gnu/services/ssh.scm: Likewise. * gnu/services/networking.scm: Likewise. * gnu/services/mail.scm: Likewise. * gnu/services/lirc.scm: Likewise. * gnu/services/desktop.scm: Likewise. * gnu/services/dbus.scm: Likewise. * gnu/services/databases.scm: Likewise. * gnu/services/base.scm: Likewise. * gnu/services/avahi.scm: Likewise. * guix/scripts/system.scm: Likewise. * tests/services.scm: Likewise. * tests/guix-system.sh: Likewise. * doc/guix.texi (Shepherd Services): Adjust accordingly. * gnu-system.am (GNU_SYSTEM_MODULES): Likewise. * po/guix/POTFILES.in: Likewise.
* build: Add 'DL' silent rule.Mathieu Lirzin2016-01-28
| | | | | | | | | * Makefile.am (AM_V_DL, AM_V_DL_, AM_V_DL_0): New variables. * gnu-system.am (gnu/packages/bootstrap/x86_64-linux/guile-2.0.9.tar.xz) (gnu/packages/bootstrap/i686-linux/guile-2.0.9.tar.xz) (gnu/packages/bootstrap/armhf-linux/guile-2.0.11.tar.xz) (gnu/packages/bootstrap/mips64el-linux/guile-2.0.9.tar.xz): Use $(AM_V_DL). * build-aux/download.scm: Print a line break between target and origin.
* Merge branch 'core-updates'Mark H Weaver2016-01-28
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| * gnu: icecat: Add fixes for CVE-2016-{1930,1935} and other bugs.Mark H Weaver2016-01-28
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/icecat-CVE-2016-1930-pt01.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt02.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt03.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt04.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt05.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt06.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt07.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt08.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt09.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt10.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt11.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt12.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt13.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt14.patch, gnu/packages/patches/icecat-CVE-2016-1930-pt15.patch, gnu/packages/patches/icecat-CVE-2016-1935.patch, gnu/packages/patches/icecat-bug-1146335-pt1.patch, gnu/packages/patches/icecat-bug-1146335-pt2.patch, gnu/packages/patches/icecat-limit-max-buffers-size-for-ANGLE.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patches.
| * Merge branch 'master' into core-updatesMark H Weaver2016-01-24
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| * | gnu: libtiff: Update to 4.0.6. Add fixes for CVE-2015-{8665,8683}.Mark H Weaver2016-01-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/libtiff-CVE-2015-8665+CVE-2015-8683.patch, gnu/packages/patches/libtiff-oob-accesses-in-decode.patch, gnu/packages/patches/libtiff-oob-write-in-nextdecode.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff): Update to 4.0.6. [source]: Add patches.
| * | gnu: Add perl-module-pluggable.Eric Bavier2016-01-20
| | | | | | | | | | | | | | | | | | | | | | | | This Perl module was moved out of Perl core in v5.19.0. * gnu/packages/perl.scm (perl-module-pluggable): New variable. * gnu/packages/patches/perl-module-pluggable-search.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
| * | gnu: doxygen: Update to 1.8.11.Andreas Enge2016-01-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/doxygen.scm (doxygen)[source]: Update to 1.8.11. Drop one patch. [build-system]: Switch to cmake-build-system, since gnu-build-system is not supported any more. [arguments]: Adapt. [native-inputs]: Drop unused perl. * gnu/packages/patches/doxygen-tmake.patch: Remove file. * gnu/packages/patches/doxygen-test.patch: Adapt. * gnu-system.am (dist_patch_DATA): Unregister patch.
| * | Merge branch 'master' into core-updatesMark H Weaver2016-01-19
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| * | | gnu: librsvg: Update to 2.40.13 [fixes CVE-2015-7558].Mark H Weaver2016-01-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/librsvg-tests.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/gnome.scm (librsvg): Update to 2.40.13. [source]: Remove patch.
| * | | gnu: automake: Adjust to deal with Perl 5.22.Ludovic Courtès2016-01-15
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes <http://bugs.gnu.org/22375>. * gnu/packages/patches/automake-regexp-syntax.patch: New file. * gnu/packages/autotools.scm (automake)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it.
| * | | gnu: gawk: Protect against random failures of the 'fts' test.Ludovic Courtès2016-01-14
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/gawk-fts-test.patch: New file. * gnu/packages/gawk.scm (gawk)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it.
| * | | Merge branch 'master' into core-updatesLudovic Courtès2016-01-13
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| * | | | gnu: perl: Add fix for CVE-2015-8607.Mark H Weaver2016-01-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/perl-CVE-2015-8607.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/perl.scm (perl)[source]: Add patch.
| * | | | gnu: flex: Update to 2.6.0.Efraim Flashner2016-01-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/flex.scm (flex): Update to 2.6.0. [source]: Remove flex-bison-tests.patch. * gnu-system.am (dist_patch_DATA): Remove flex-bison-tests.patch. * gnu/packages/patches/flex-bison-tests.patch: Remove it.
| * | | | gnu: gnutls: Update to 3.4.7.Efraim Flashner2016-01-05
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/tls.scm (gnutls): Update to 3.4.7. [source]: Remove gnutls-doc-fix.patch. [arguments]: Remove delete-prebuilt-unfixed-info-file phase. [native-inputs]: Remove texinfo. * gnu-system.am (dist_patch_DATA): Remove gnutls-doc-fix.patch
| * | | | Merge branch 'master' into core-updatesLudovic Courtès2016-01-03
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| * | | | | gnu: grep: Skip timing-sensitive test.Ludovic Courtès2016-01-03
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This avoids failures on loaded machines as seen at <http://hydra.gnu.org/build/906900/log/raw>. * gnu/packages/patches/grep-timing-sensitive-test.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/base.scm (grep): Use it.
| * | | | | gnu: findutils: Update to 4.6.0.Ludovic Courtès2016-01-01
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/findutils-absolute-paths.patch: Remove. * gnu/packages/patches/findutils-test-xargs.patch: New file. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/base.scm (findutils): Update to 4.6.0. Remove 'findutils-absolute-paths.patch' and add 'findutils-test-xargs.patch'.
| * | | | | gnu: commencement: Use GMP 6.0.0a for bootstrapping.Ludovic Courtès2015-12-18
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/multiprecision.scm (gmp-6.0): New variable. * gnu/packages/commencement.scm (gcc-boot0, gcc-final): Use it. * gnu/packages/patches/gmp-arm-asm-nothumb.patch: New file, reinstated from before e414a7d. * gnu-system.am (dist_patch_DATA): Add it.
| * | | | | gnu: perl: Build deterministically, and make byproducts deterministic.Ludovic Courtès2015-12-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | With this, a --rounds=2 build passes, and timestamps in POD files can be controlled with 'SOURCE_DATE_EPOCH'. * gnu/packages/patches/perl-deterministic-ordering.patch, gnu/packages/patches/perl-no-build-time.patch, gnu/packages/patches/perl-source-date-epoch.patch: New files. * gnu/packages/perl.scm (perl)[source]: Use them. * gnu-system.am (dist_patch_DATA): Add them.
| * | | | | gnu: perl: Update to 5.22.0.Ludovic Courtès2015-12-13
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/perl.scm (perl)[source]: Update to 5.22.0. Remove "perl-module-pluggable-search.patch" since Module::Pluggable appears to be gone. [arguments] <configure-phase>: Adjust Cwd.pm file name. Replace -std=c89 with -std=gnu89. * gnu/packages/commencement.scm (perl-boot0): Add 'disable-pthreads' phase. * gnu/packages/patches/perl-no-sys-dirs.patch: Update. * gnu/packages/patches/perl-module-pluggable-search.patch: Remove. * gnu-system.am (dist_patch_DATA): Adjust accordingly.
| * | | | | build: Add missing patches to the distribution.Ludovic Courtès2015-12-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu-system.am (dist_patch_DATA): Add glibc-hurd-extern-inline.patch and plink-1.07-unclobber-i.patch.
| * | | | | Merge branch 'master' into core-updatesLudovic Courtès2015-12-12
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| * | | | | | gnu: libarchive: Fix test failure on SELinux systems.Ludovic Courtès2015-12-09
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Reported by Jan Synáček <jan.synacek@gmail.com> at <https://lists.gnu.org/archive/html/guix-devel/2015-11/msg00522.html>. * gnu/packages/patches/libarchive-bsdtar-test.patch: New file. * gnu/packages/backup.scm (libarchive)[source]: Use it. * gnu-system.am (dist_patch_DATA): Add it.
| * | | | | | gnu: gmp: Drop patch included in release 6.1.0.Andreas Enge2015-12-02
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/multiprecision.scm (gmp)[source]: Drop patch. * gnu/packages/patches/gmp-arm-asm-nothumb.patch: Remove patch. * gnu-system.am (dist_patch_DATA): Unregister patch.
| * | | | | | gnu: procps: Update to 3.3.11.宋文武2015-11-16
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | procps-ng is the new upstream. * gnu/packages/procps.scm (procps): Update to 3.3.11. [source]: Adjust formatting. Remove patches. [home-page]: Update URL. * gnu/packages/patches/procps-make-3.82.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it.
| * | | | | | gnu: emacs: Honor 'SOURCE_DATE_EPOCH'.Alex Kost2015-11-14
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Suggested by Ludovic Courtès <ludo@gnu.org>. * gnu/packages/patches/emacs-source-date-epoch.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/emacs.scm (emacs)[source]: Use it.
| * | | | | | gnu: grep: Update to 2.22.Ludovic Courtès2015-11-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/base.scm (grep): Upgrade to 2.22. Remove 'grep-CVE-2015-1345.patch'. * gnu/packages/patches/grep-CVE-2015-1345.patch: Remove. * gnu-system.am (dist_patch_DATA): Adjust accordingly.
| * | | | | | gnu: unzip: Reorganize security fixes for improved clarity.Mark H Weaver2015-10-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/unzip-fix-overflows-and-infloop.patch: Delete file. Its contents are now split into the following new files: * gnu/packages/patches/unzip-CVE-2015-7696.patch, gnu/packages/patches/unzip-CVE-2015-7697.patch, gnu/packages/patches/unzip-overflow-on-invalid-input.patch: New files. * gnu-system.am (dist_patch_DATA): Adjust accordingly. * gnu/packages/zip.scm (unzip)[source]: Adjust patches accordingly.
* | | | | | | gnu: c-ares: Move to adns.scm.Efraim Flashner2016-01-27
| |_|_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/aria2.scm (c-ares): Move to... * gnu/packages/adns.scm (c-ares): ... here. * gnu/packages/aria2.scm: Remove file. * gnu-system.am (GNU_SYSTEM_MODULES): Remove aria2.scm.
* | | | | | gnu: Add TopHat.Ricardo Wurmus2016-01-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (tophat): New variable. * gnu/packages/patches/tophat-build-with-later-seqan.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
* | | | | | gnu: Add NQC.Eric Bavier2016-01-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/lego.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* | | | | | gnu: linux-libre: Add fix for CVE-2016-0728.Mark H Weaver2016-01-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/linux-libre-CVE-2016-0728.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/linux.scm (linux-libre)[source]: Add patch.
* | | | | | gnu: arb: Update to 2.8.1.Andreas Enge2016-01-20
| |_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/algebra.scm (arb)[source]: Update to 2.8.1. Add patch. * gnu/packages/patches/arb-ldconfig.patch: New file. * gnu-system.am (dist_patch_DATA): Register patch.
generated by cgit v1.2.3 (git 2.45.0) at 2024-12-26 23:43:13 +0000