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* gnu: Move Sphinx and friends to (gnu packages sphinx).Marius Bakke2019-05-24
| | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python-xyz.scm (python-sphinxcontrib-websupport, python2-sphinxcontrib-websupport, python-sphinx, python2-sphinx, python-sphinx-gallery, python2-sphinx-gallery, python-sphinx-rtd-theme, python2-sphinx-rtd-theme, python-guzzle-sphinx-theme, python2-guzzle-sphinx-theme, python-sphinxcontrib-newsfeed, python-sphinxcontrib-programoutput, python2-sphinxcontrib-programoutput, python-sphinx-repoze-interface, python2-sphinx-repoze-interface, python-sphinx-cloud-sptheme, python2-sphinx-cloud-sptheme, python-sphinx-alabaster-theme, python2-sphinx-alabaster-theme, python-sphinx-me, python-sphinxcontrib-svg2pdfconverter): Move to ... (gnu): * gnu/packages/sphinx.scm: ... here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly. * gnu/packages/admin.scm, gnu/packages/bioinformatics.scm, gnu/packages/calendar.scm, gnu/packages/cluster.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/elf.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emulators.scm, gnu/packages/finance.scm, gnu/packages/image.scm, gnu/packages/libffi.scm, gnu/packages/mail.scm, gnu/packages/mpd.scm, gnu/packages/openstack.scm, gnu/packages/pdf.scm, gnu/packages/python-web.scm, gnu/packages/search.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/tls.scm, gnu/packages/web.scm: Adjust module imports.
* gnu: postgresql: Replace with 10.8 [security fixes].Marius Bakke2019-05-24
| | | | | | | This fixes CVE-2019-10129 and CVE-2019-10130. * gnu/packages/databases.scm (postgresql)[replacement]: New field. (postgresql-10.8): New variable.
* gnu: Add coq-stdpp.Dan Frumin2019-05-24
| | | | | | * gnu/packages/coq.scm (coq-stdpp): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: lxqt-panel: fix taskbar plugin's application list issue.Reza Alizadeh Majd2019-05-24
| | | | | | | * gnu/packages/lxqt.scm (lxqt-panel): move `kwindowsystem` from `inputs` to `propagated-inputs` Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: lxqt-session: fix lxqt-rc.xml permission issueReza Alizadeh Majd2019-05-24
| | | | | | | * gnu/packages/lxqt.scm (lxqt-session): add write permission to lxqt-rc.xml file after initial copy to user directory Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add libjit.Andy Tai2019-05-24
| | | | | | * gnu/packages/assembly.scm (libjit): Add at 0.1.4 Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: guile-next: Update to 2.9.2.Ludovic Courtès2019-05-24
| | | | * gnu/packages/guile.scm (guile-next): Update to 2.9.2.
* gnu: Add chocolate-doom.Jakob L. Kreuze2019-05-24
| | | | * gnu/packages/games.scm (chocolate-doom): New variables.
* gnu: gajim-omemo: Update to 2.6.29.Rutger Helling2019-05-24
| | | | * gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.29.
* gnu: parallel: Update to 20190522.Tobias Geerinckx-Rice2019-05-23
| | | | * gnu/packages/parallel.scm (parallel): Update to 20190522.
* gnu: wgetpaste: Remove dead paste site.Efraim Flashner2019-05-23
| | | | | * gnu/packages/wget.scm (wgetpaste)[arguments]: Add custom phase to remove newly defunct paste site.
* gnu: Add ioquake3.Pierre Neidhardt2019-05-23
| | | | * gnu/packages/game-development.scm (ioquake3): New variable.
* gnu: strace: Update to 5.1.Marius Bakke2019-05-23
| | | | * gnu/packages/linux.scm (strace): Update to 5.1.
* gnu: notmuch: Update to 0.28.4.Marius Bakke2019-05-23
| | | | | | * gnu/packages/mail.scm (notmuch): Update to 0.28.4. [native-inputs]: Change PYTHON-2 and PYTHON2-DOCUTILS to PYTHON and PYTHON-DOCUTILS.
* gnu: silkaj: Update to 0.7.0.Nicolas Goaziou2019-05-23
| | | | | * gnu/packages/finance.scm (silkaj): Update to 0.7.0. [inputs]: Add python-texttable.
* gnu: flare-game: Update to 1.10.Nicolas Goaziou2019-05-23
| | | | * gnu/packages/games.scm (flare-game): Update to 1.10.
* gnu: flare-engine: Update to 1.10.Nicolas Goaziou2019-05-23
| | | | * gnu/packages/games.scm (flare-engine): Update to 1.10.
* gnu: salmon: Update to 0.13.1.Ricardo Wurmus2019-05-23
| | | | | | | | | * gnu/packages/bioinformatics.scm (salmon): Update to 0.13.1. [arguments]: Adjust "do-not-look-for-boost" build phase; adjust "prepare-rapmap" phase; adjust "use-system-libraries" phase. [inputs]: Remove bwa, jellyfish, spdlog-for-salmon. [native-inputs]: Add pkg-config. (spdlog-for-salmon, bwa-for-salmon): Remove variables.
* gnu: python-duniterpy: Update to 0.54.1.Nicolas Goaziou2019-05-23
| | | | * gnu/packages/finance.scm (python-duniterpy): Update to 0.54.1.
* gnu: wireshark: Update to 3.0.2.Nicolas Goaziou2019-05-23
| | | | * gnu/packages/networking.scm (wireshark): Update to 3.0.2.
* import: cran: Ignore invalid packages.Ricardo Wurmus2019-05-23
| | | | | * guix/import/cran.scm (invalid-packages): New variable. (description->package): Use it.
* gnu: keepassxc: Update to 2.4.1.Nicolas Goaziou2019-05-23
| | | | | | * gnu/packages/password-utils.scm (keepassxc): Update to 2.4.1. [arguments]: Disable update checking. [inputs]: Add qrencode and qtsvg.
* gnu: Add squirrel.Andy Tai2019-05-22
| | | | | * gnu/packages/squirrel.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu: git-daemon-service-type: Fix typo "repositories".Vagrant Cascadian2019-05-22
| | | | * gnu/services/version-control (git-daemon-service-type)[description]: Fix typo.
* gnu: darkstat-service-type: Fix typo "statistics".Vagrant Cascadian2019-05-22
| | | | * gnu/services/monitoring (darkstat-service-type)[description]: Fix typo.
* gnu: xf86-input-joystick: Fix typo "control".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/xorg (xf86-input-joystick)[description]: Fix typo.
* gnu: renderproto: Fix typo "protocol".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/xorg (renderproto)[description]: Fix typo.
* gnu: xautomation: Fix typo "programs".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/xdisorg (xautomation)[description]: Fix typo.
* gnu: nghttp2: Fix typo "compatibility".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/web (nghttp2)[description]: Fix typo.
* gnu: python-internetarchive: Fix typo "programmatic".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/web (python-internetarchive)[description]: Fix typo.
* gnu: ruby-markaby: Fix typo "Embedded".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/ruby (ruby-markaby)[description]: Fix typo.
* gnu: python-honcho: Fix typo "several".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/python-xyz (python-honcho)[description]: Fix typo.
* gnu: perl-text-csv-xs: Fix typo "Routines".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/perl (perl-text-csv-xs)[synopsis]: Fix typo.
* gnu: perl-moox-handlesvia: Fix typo "attribute".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/perl (perl-moox-handlesvia)[description]: Fix typo.
* gnu: perl-data-uniqid: Fix typo "system".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/perl (perl-data-uniqid)[description]: Fix typo.
* gnu: pdfposter: Fix typo "multiple".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/pdf (pdfposter)[description]: Fix typo.
* gnu: ocaml-compiler-libs: Fix typo "package".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/ocaml (ocaml-compiler-libs)[description]: Fix typo.
* gnu: ocaml-migrate-parsetree: Fix typo "converter".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/ocaml (ocaml-migrate-parsetree)[synopsis]: Fix typo.
* gnu: mumps: Fix typo "Gaussian".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/maths (mumps)[description]: Fix typo.
* gnu: lxqt-policykit: Fix typo "authentication".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/lxqt (lxqt-policykit)[description]: Fix typo.
* doc: Murmur: Fix typo "authentication".Vagrant Cascadian2019-05-22
| | | | * doc/guix.texi (Murmur): Fix typo.
* gnu: ghc-persistent: Fix typo "systems".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/haskell (ghc-persistent)[description]: Fix typo.
* gnu: ghc-reflection: Fix typo "propagating".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/haskell (ghc-reflection)[description]: Fix typo.
* gnu: ghc-aeson-pretty: Fix typo "readability".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/haskell-web (ghc-aeson-pretty)[description]: Fix typo.
* gnu: go-github-com-btcsuite-btcd-btcec: Fix typo "significantly".Vagrant Cascadian2019-05-22
| | | | | * gnu/packages/golang (go-github-com-btcsuite-btcd-btcec)[description]: Fix typo.
* gnu: go-github-com-docker-distribution: Correct grammar and spelling.Vagrant Cascadian2019-05-22
| | | | | | * gnu/packages/golang (go-github-com-docker-distribution)[description]: Correct grammar and spelling. [synopsis]: Correct grammar and spelling.
* gnu: go-github-com-google-cadvisor: Fix typo "performance".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/golang (go-github-com-google-cadvisor)[description]: Fix typo.
* gnu: go-golang-org-x-net-context: Fix typo "cancellation".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/golang (go-golang-org-x-net-context)[description]: Fix typo.
* gnu: go-github-com-petermattis-goid: Fix typo "programmatically".Vagrant Cascadian2019-05-22
| | | | | * gnu/packages/syncthing (go-github-com-petermattis-goid)[description]: Fix typo.
* gnu: python-docopt: Fix typo "programmatically".Vagrant Cascadian2019-05-22
| | | | * gnu/packages/python-xyz (python-docopt)[description]: Fix typo.
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