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* gnu: r-genomicalignments: Update to 1.16.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.16.0.
* gnu: r-summarizedexperiment: Update to 1.10.1.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.10.1.
* gnu: r-delayedarray: Update to 0.6.0.Ricardo Wurmus2018-06-02
| | | | | * gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.6.0. [propagated-inputs]: Add r-biocparallel.
* gnu: r-rsamtools: Update to 1.32.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-rsamtools): Update to 1.32.0.
* gnu: r-biostrings: Update to 2.48.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.48.0.
* gnu: r-biocparallel: Update to 1.14.1.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.14.1.
* gnu: r-biomart: Update to 2.36.1.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-biomart): Update to 2.36.1.
* gnu: r-annotationdbi: Update to 1.42.1.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.42.1.
* gnu: r-biobase: Update to 2.40.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-biobase): Update to 2.40.0.
* gnu: r-genomicranges: Update to 1.32.3.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.32.3.
* gnu: r-xvector: Update to 0.20.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-xvector): Update to 0.20.0.
* gnu: r-limma: Update to 3.36.1.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-limma): Update to 3.36.1.
* gnu: r-variantannotation: Update to 1.26.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.26.0.
* gnu: r-edger: Update to 3.22.2.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-edger): Update to 3.22.2.
* gnu: r-genomeinfodb: Update to 1.16.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.16.0.
* gnu: r-iranges: Update to 2.14.10.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-iranges): Update to 2.14.10.
* gnu: r-s4vectors: Update to 0.18.2.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.18.2.
* gnu: r-dnacopy: Update to 1.54.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.54.0.
* gnu: r-bioccheck: Update to 1.16.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.16.0.
* gnu: r-biocstyle: Update to 2.8.2.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.8.2.
* gnu: r-biocviews: Update to 1.48.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.48.0.
* gnu: r-biocinstaller: Update to 1.30.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.30.0.
* gnu: r-biocgenerics: Update to 0.26.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.26.0.
* gnu: r-grohmm: Update to 1.14.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.14.0.
* gnu: r-systempiper: Update to 1.14.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.14.0.
* gnu: r-shortread: Update to 1.38.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-shortread): Update to 1.38.0.
* gnu: r-gostats: Update to 2.46.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-gostats): Update to 2.46.0.
* gnu: r-category: Update to 2.46.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-category): Update to 2.46.0.
* gnu: r-gseabase: Update to 1.42.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.42.0.
* gnu: r-rbgl: Update to 1.56.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.56.0.
* gnu: r-annotationforge: Update to 1.22.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.22.0.
* gnu: r-dexseq: Update to 1.26.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.26.0.
* gnu: r-deseq2: Update to 1.20.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.20.0.
* gnu: r-genefilter: Update to 1.62.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.62.0.
* gnu: r-geneplotter: Update to 1.58.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.58.0.
* gnu: r-copynumber: Update to 1.20.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-copynumber): Update to 1.20.0.
* gnu: r-annotate: Update to 1.58.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioinformatics.scm (r-annotate): Update to 1.58.0.
* gnu: r-qdnaseq: Update to 1.16.0.Ricardo Wurmus2018-06-02
| | | | | * gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.16.0. [propagated-inputs]: Add r-biocparallel.
* gnu: r-cghcall: Update to 2.42.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioconductor.scm (r-cghcall): Update to 2.42.0.
* gnu: r-cghbase: Update to 1.40.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioconductor.scm (r-cghbase): Update to 1.40.0.
* gnu: r-marray: Update to 1.58.0.Ricardo Wurmus2018-06-02
| | | | | * gnu/packages/bioconductor.scm (r-marray): Update to 1.58.0. [propagated-inputs]: Remove r-biobase.
* gnu: r-chippeakanno: Update to 3.14.0.Ricardo Wurmus2018-06-02
| | | | | | * gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.14.0. [propagated-inputs]: Add r-biostrings, r-delayedarray, r-genomicranges, r-iranges, and r-s4vectors.
* gnu: r-ripseeker: Update to 1.20.0.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.20.0.
* gnu: r-diffbind: Update to 2.8.0.Ricardo Wurmus2018-06-02
| | | | | | * gnu/packages/bioconductor.scm (r-diffbind): Update to 2.8.0. [propagated-inputs]: Add r-genomicranges, r-ggplot2, and r-summarizedexperiment.
* gnu: r-regioner: Update to 1.12.0.Ricardo Wurmus2018-06-02
| | | | | * gnu/packages/bioconductor.scm (r-regioner): Update to 1.12.0. [propagated-inputs]: Add r-s4vectors.
* gnu: r-hpar: Update to 1.22.2.Ricardo Wurmus2018-06-02
| | | | * gnu/packages/bioconductor.scm (r-hpar): Update to 1.22.2.
* gnu: r-minimal: Update to 3.5.0.Ricardo Wurmus2018-06-02
| | | | | | | | * gnu/packages/statistics.scm (r-with-tests): New variable derived from r-minimal; update to 3.5.0. [arguments]: Build recommended packages. (r-minimal): Inherit from r-with-tests. [arguments]: Disable recommended packages and tests.
* gnu: emacs-elfeed: Update to 3.0.0.Clément Lassieur2018-06-02
| | | | * gnu/packages/emacs.scm (emacs-elfeed): Update to 3.0.0.
* self: Include gnu/build/* in the result.Ludovic Courtès2018-06-02
| | | | | | | | | | Previously, modules like gnu/build/cross-toolchain.scm or gnu/build/svg.scm were missing from the result. * guix/self.scm (compiled-guix)[*system-modules*]: Add gnu/build/* to #:extra-files. (imported-files)[same-target?]: New procedure. [build]: Call 'delete-duplicates' on FILES.
* self: 'compiled-files' builds the given list of files.Ludovic Courtès2018-06-02
| | | | | | | * guix/self.scm (compiled-files): Add 'module-files' parameter. [build]: 'process-directory' now honors MODULE-FILES instead of building any '.scm' file it sees. (scheme-node): Adjust accordingly.
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