| Commit message (Collapse) | Author | Age |
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* build-aux/run-system-tests.scm (run-system-tests): Pass #:fallback? #t
to 'set-build-options*'.
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This is a followup to b5c347ad3d83ee580c111bd14c80b469b0dcb294.
* tests/pypi.scm ("pypi->guix-package"): Expect 'propagated-inputs', not
'inputs'.
("pypi->guix-package, wheels"): Likewise.
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* tests/syscalls.scm ("pivot-root"): Skip when 'uname' returns a
'utsname:release' > 4.7.5.
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* gnu/packages/lolcode.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/ssh.scm (autossh): New variable.
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* gnu/packages/statistics.scm (r): Update to 3.3.1.
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* gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
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* gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
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* gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
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* gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
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* gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
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* gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
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* gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
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* gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
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* gnu/packages/statistics.scm (r-acepack): Update to 1.4.0.
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* gnu/packages/statistics.scm (r-r6): Update to 2.2.0.
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* gnu/packages/statistics.scm (r-evaluate): Update to 0.10.
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* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.2.
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* gnu/packages/statistics.scm (r-stringi): Update to 1.1.2.
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* gnu/packages/statistics.scm (r-matrix): Update to 1.2-7.1.
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* gnu/packages/statistics.scm (r-colorspace): Update to 1.2-7.
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* gnu/packages/web.scm (r-jsonlite): Update to 1.1.
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* gnu/packages/web.scm (r-curl): Update to 2.2.
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* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-3.
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* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to
7.500.0.
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.500.0.0.
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* gnu/packages/maths.scm (armadillo): Update to 7.500.0.
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* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.1.
[propagated-inputs]: Add r-evaluate, r-tibble.
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* gnu/packages/bioinformatics.scm (bioperl-minimal): Update to 1.7.0.
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The fix from upstream did not apply cleanly due to many context changes.
This was adapted by cloning mupdf 1.9a from git and fixing conflicts
after applying our patches and cherry-picking upstream commit 1e03c06.
This is a follow-up to 47a04fca999b91309d196afc9ebf4d8ac6f2083f.
* gnu/packages/patches/mupdf-CVE-2016-8674.patch: Adapt to 1.9a.
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* guix/ui.scm (display-profile-content-diff): New variable.
* guix/scripts/package.scm (process-query): Use display-profile-content-diff.
In collaboration with Benz Schenk.
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* gnu/packages/python.scm (python-certifi): Update to 2016.8.31.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/security-token.scm (libyubikey)[license]: Add prefix.
(ykclient)[license]: Add prefix.
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* gnu/packages/yubico.scm: Delete file.
* gnu/packages/security-token.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.
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* gnu/packages/mail.scm (offlineimap)[native-inputs]: Add asciidoc and
libxslt.
[arguments]: Add phases 'build-documentation' and
'install-documentation' to build and install manpages. Also remove
unneeded key 'inputs' from 'wrap-binary' phase.
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* gnu/packages/patches/notmuch-emacs-25-compatibility-fix.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/mail.scm (notmuch): Update to 0.23.1. Remove patch.
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* gnu/packages/video.scm (vlc)[inputs]: Add x265.
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* gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add x265.
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* gnu/packages/video.scm (ffmpeg)[inputs]: Add x265.
[arguments]: Add '--enable-libx265' flag.
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* gnu/packages/video.scm (x265): New variable.
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* gnu/packages/psyc.scm (psyclpc): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/mail.scm (opensmtpd)[license]: Use LICENSE:OPENSSL, not
OPENSSL.
(opensmtpd-extras)[license]: Likewise.
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* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.6.0.
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* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.6.0.
[native-inputs]: Add autoconf.
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* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.20.0.
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* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.40.0.
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* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.6.0.
[propagated-inputs]: Add r-rcpp, r-htslib, r-runit, r-s4vectors.
[inputs]: Add zlib.
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* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.6.0.
[propagated-inputs]: Add r-kernsmooth.
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* gnu/packages/bioinformatics.scm (r-impute): Update to 1.48.0.
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