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* gnu: perl-sub-quote: Update to 2.005001.•••* gnu/packages/perl.scm (perl-sub-quote): Update to 2.005001. Tobias Geerinckx-Rice2018-04-27
* gnu: perl-capture-tiny: Update to 0.48.•••* gnu/packages/perl.scm (perl-capture-tiny): Update to 0.48. Tobias Geerinckx-Rice2018-04-27
* gnu: perl-b-hooks-endofscope: Update to 0.24.•••* gnu/packages/perl.scm (perl-b-hooks-endofscope): Update to 0.24. Tobias Geerinckx-Rice2018-04-27
* gnu: perl-file-sharedir-install: Update to 0.13.•••* gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.13. Tobias Geerinckx-Rice2018-04-27
* gnu: perl-test-notabs: Update to 2.02.•••* gnu/packages/perl-check.scm (perl-test-notabs): Update to 2.02. Tobias Geerinckx-Rice2018-04-27
* gnu: python-simplejson: Update to 3.14.0.•••* gnu/packages/python.scm (python-simplejson): Update to 3.14.0. Tobias Geerinckx-Rice2018-04-27
* gnu: python2-ndg-httpsclient: Fix build.•••This might be a follow-up to a39cc016329f1f490ac7629fa81c9b686e7b0f4e from 2016, which would be neat. * gnu/packages/python-web.scm (python2-ndg-httpsclient)[arguments]: Use SUBSTITUTE-KEYWORD-ARGUMENTS to still skip tests. Tobias Geerinckx-Rice2018-04-27
* gnu: paperkey: Update to 1.5.•••* gnu/packages/gnupg.scm (paperkey): Update to 1.5. Christopher Lemmer Webber2018-04-26
* gnu: bedops: Update to 2.4.33.•••* gnu/packages/bioinformatics.scm (bedops): Update to 2.4.33. Roel Janssen2018-04-27
* gnu: samtools: Update to 1.8.•••* gnu/packages/bioinformatics.scm (samtools): Update to 1.8. Roel Janssen2018-04-27
* gnu: bcftools: Update to 1.8.•••* gnu/packages/bioinformatics.scm (bcftools): Update to 1.8. * gnu/local.mk: Remove patch. * gnu/packages/patches/bcftools-regidx-unsigned-char.patch: Remove file. Roel Janssen2018-04-27
* gnu: htslib: Update to 1.8.•••* gnu/packages/bioinformatics.scm (htslib): Update to 1.8. Roel Janssen2018-04-27
* gnu: PackageKit: Update to 1.1.10 [fixes CVE-2018-1106].•••* gnu/packages/freedesktop.scm (packagekit): Update to 1.1.10. Leo Famulari2018-04-26
* gnu: emacs-magit-popup: Update to 2.12.3.•••* gnu/packages/emacs.scm (emacs-magit-popup): Update to 2.12.3. Alex Kost2018-04-26
* gnu: emacs-with-editor: Update to 2.7.2.•••* gnu/packages/emacs.scm (emacs-with-editor): Update to 2.7.2. Alex Kost2018-04-26
* gnu: geiser: Update to 0.10.•••* gnu/packages/emacs.scm (geiser): Update to 0.10. Alex Kost2018-04-26
* gnu: python-josepy: Update to 1.1.0.•••* gnu/packages/python-crypto.scm (python-josepy, python2-josepy): Update to 1.1.0. Leo Famulari2018-04-26
* gnu: python-qrcode: Update to 6.0.•••* gnu/packages/python.scm (python-qrcode): Update to 6.0. Tobias Geerinckx-Rice2018-04-26
* gnu: python2-pathlib2: Update to 2.3.2.•••* gnu/packages/python.scm (python2-pathlib2): Update to 2.3.2. Tobias Geerinckx-Rice2018-04-26
* gnu: python-rst.linker: Update to 1.9.•••* gnu/packages/python.scm (python-rst.linker): Update to 1.9. Tobias Geerinckx-Rice2018-04-26
* gnu: python-sphinx@1.6: Update to 1.6.4.•••* gnu/packages/python.scm (python-sphinx-1.6): Update to 1.6.4. Tobias Geerinckx-Rice2018-04-26
* gnu: python-ndg-httpsclient: Update to 0.5.0.•••* gnu/packages/python-web.scm (python-ndg-httpsclient): Update to 0.5.0. Tobias Geerinckx-Rice2018-04-26
* gnu: r-ztable: Update to 0.1.8.•••* gnu/packages/statistics.scm (r-ztable): Update to 0.1.8. Tobias Geerinckx-Rice2018-04-26
* gnu: r-sn: Update to 1.5-2.•••* gnu/packages/statistics.scm (r-sn): Update to 1.5-2. Tobias Geerinckx-Rice2018-04-26
* gnu: r-sourcetools: Update to 0.1.7.•••* gnu/packages/statistics.scm (r-sourcetools): Update to 0.1.7. Tobias Geerinckx-Rice2018-04-26
* gnu: python-html5-parser: Update to 0.4.5.•••* gnu/packages/python-web.scm (python-html5-parser): Update to 0.4.5. Tobias Geerinckx-Rice2018-04-26
* gnu: mg: Update to 20180408.•••* gnu/packages/text-editors.scm (mg): Update to 20180408. [source]: Switch from discontinued proper releases to a git tag. Tobias Geerinckx-Rice2018-04-26
* gnu: mg: Find ncurses through pkg-config.•••* gnu/packages/text-editors.scm (mg)[arguments]: Remove explicit ‘CURSES_LIBS=-lncurses’ setting from #:make-flags. Tobias Geerinckx-Rice2018-04-26
* gnu: fio: Use INVOKE.•••* gnu/packages/benchmark.scm (fio)[arguments]: Substitute INVOKE for SYSTEM* and end phase with explicit #t. Tobias Geerinckx-Rice2018-04-26
* gnu: ghostwriter: Update to 1.6.2.•••* gnu/packages/text-editors.scm (ghostwriter): Update to 1.6.2. Tobias Geerinckx-Rice2018-04-26
* gnu: youtube-viewer: Update to 3.3.4.•••* gnu/packages/video.scm (youtube-viewer): Update to 3.3.4. Tobias Geerinckx-Rice2018-04-26
* gnu: openvpn: Update to 2.4.6.•••* gnu/packages/vpn.scm (openvpn): Update to 2.4.6. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-text-glob: Update to 0.11.•••* gnu/packages/perl.scm (perl-text-glob): Update to 0.11. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-task-weaken: Update to 1.06.•••* gnu/packages/perl.scm (perl-task-weaken): Update to 1.06. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-module-find: Update to 0.13.•••* gnu/packages/perl.scm (perl-module-find): Update to 0.13. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-mime-types: Update to 2.17.•••* gnu/packages/perl.scm (perl-mime-types): Update to 2.17. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-file-sharedir-install: Update to 0.12.•••* gnu/packages/perl.scm (perl-file-sharedir-install): Update to 0.12. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-devel-overloadinfo: Update to 0.005.•••* gnu/packages/perl.scm (perl-devel-overloadinfo): Update to 0.005. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-class-inspector: Update to 1.32.•••* gnu/packages/perl.scm (perl-class-inspector): Update to 1.32. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-file-find-rule: Update to 0.34.•••* gnu/packages/perl.scm (perl-file-find-rule): Update to 0.34. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-error: Update to 0.17025.•••* gnu/packages/perl-.scm (perl-error): Update to 0.17025. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-test-simple: Update to 1.302136.•••* gnu/packages/perl-check.scm (perl-test-simple): Update to 1.302136. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-test-output: Update to 1.031.•••* gnu/packages/perl-check.scm (perl-test-output): Update to 1.031. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-test-differences: Update to 0.64.•••* gnu/packages/perl-check.scm (perl-test-differences): Update to 0.64. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-test-pod: Update to 1.52.•••* gnu/packages/perl-check.scm (perl-test-pod): Update to 1.52. Tobias Geerinckx-Rice2018-04-26
* gnu: perl-test-base: Update to 0.89.•••* gnu/packages/perl-check.scm (perl-test-base): Update to 0.89. Tobias Geerinckx-Rice2018-04-26
* gnu: zsh: Update to 5.5.1.•••* gnu/packages/shells.scm (zsh): Update to 5.5.1. [source]: Remove obsolete patches. * gnu/packages/patches/zsh-CVE-2018-7548.patch, gnu/packages/patches/zsh-CVE-2018-7549.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Leo Famulari2018-04-26
* gnu: Add libpfm4.•••* gnu/packages/linux.scm (libpfm4): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Rouby Pierre-Antoine2018-04-26
* gnu: Add psm2.•••* gnu/packages/linux.scm (psm2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Rouby Pierre-Antoine2018-04-26
* gnu: perl@5.26.2: Don't export variable.•••This prevents it from ending up in user profiles, which would fail due to wrong search paths as reported in <https://bugs.gnu.org/31216#43>. * gnu/packages/perl.scm (perl-5.26.2): Use DEFINE instead of DEFINE-PUBLIC. Marius Bakke2018-04-26
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