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* gnu: Add pysam.Ricardo Wurmus2014-12-26
| | | | | | * gnu/packages/python.scm (python-pysam, python2-pysam): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add fastjar.Ricardo Wurmus2014-12-26
| | | | | | * gnu/packages/compression.scm (fastjar): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: qemu: Update to 2.2.0.Mark H Weaver2014-12-26
| | | | * gnu/packages/qemu.scm (qemu): Update to 2.2.0.
* gnu: ntp: Update to 4.2.8.Mark H Weaver2014-12-25
| | | | | * gnu/packages/ntp.scm (ntp): Update to 4.2.8. Add openssl to inputs. Add pkg-config to native-inputs. Change source URI to archive.ntp.org.
* Revert "gnu: matplotlib: Comment out python2-matplotlib."Ludovic Courtès2014-12-23
| | | | This reverts commit afc720d34c43a2fcf0b5871226c15ad6c5f73697.
* build-system/python: Fix 'package-with-explicit-python'.Ludovic Courtès2014-12-23
| | | | | | | | Reported by Federico Beffa <beffa@ieee.org> and Eric Bavier <ericbavier@gmail.com>. * guix/build-system/python.scm (package-with-explicit-python): Do nothing when P's build system is not PYTHON-BUILD-SYSTEM.
* gnu: matplotlib: Comment out python2-matplotlib.Federico Beffa2014-12-23
| | | | | | * gnu/packages/python.scm (python2-matplotlib, python2-scipy, python2-numpy): Comment out python2-matplotlib and the packages making use of it as the generation of the derivation of these packages takes very long.
* Optimize package-transitive-supported-systems.Mark H Weaver2014-12-21
| | | | | | * guix/packages.scm (first-value): Remove. (define-memoized/v): New macro. (package-transitive-supported-systems): Rewrite.
* packages: Sort Scheme file lists used by 'fold-packages'.Ludovic Courtès2014-12-21
| | | | * gnu/packages.scm (scheme-files): Call 'sort' on result.
* Really remove the 'nix-upstream' submodule.Mark H Weaver2014-12-20
| | | | * nix-upstream: Remove subproject.
* gnu: Add xfce4-terminal.宋文武2014-12-20
| | | | * gnu/packages/xfce.scm (xfce4-terminal): New variable.
* gnu: Add vte.宋文武2014-12-20
| | | | * gnu/packages/gnome.scm (vte, vte/gtk+-2): New variables.
* services: xorg: Make SLiM sessions configurable.宋文武2014-12-20
| | | | | | | | * gnu/services/xorg.scm (%default-xsessions): New variable. (xsessions-directory): New procedure. (slim-service): Add #:sessions and #:auto-login-session parameters. [slim.cfg]: Honor #:sessions. (xinitrc): Adjust accordingly.
* Remove 'nix-upstream' submodule.Ludovic Courtès2014-12-19
| | | | | | * nix/sync-with-upstream: Remove. * bootstrap: Remove uses of 'git submodule' and 'sync-with-usptream'. * .gitmodules: Remove.
* Merge branch 'nix' into 'master'.Ludovic Courtès2014-12-19
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* gnu: Add bowtieRicardo Wurmus2014-12-19
| | | | | | * gnu/packages/bioinformatics.scm (bowtie): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* services: static-networking-service: Switch to (guix build syscalls).Ludovic Courtès2014-12-19
| | | | | | * gnu/services/networking.scm (static-networking-service): Remove #:inetutils parameter. Rewrite using 'configure-network-interface' and 'set-network-interface-flags'.
* syscalls: Add more procedures for network interfaces.Ludovic Courtès2014-12-19
| | | | | | | | | | | * guix/build/syscalls.scm (sizeof*, type-size, write-type, write-types, read-type, read-types, define-c-struct): New macros. (SIOCSIFFLAGS, SIOCGIFADDR, SIOCSIFADDR): New variables. (sockaddr-in, sockaddr-in6): New C structs. (write-socket-address!, read-socket-address, set-network-interface-flags, set-network-interface-address, network-interface-address, configure-network-interface): New procedures.
* gnu: Add Clone.Ricardo Wurmus2014-12-19
| | | | | | * gnu/packages/perl.scm (perl-clone): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: cairocffi: Move to python module.Federico Beffa2014-12-18
| | | | | | | | * gnu/packages/gtk.scm, gnu/packages/python.scm (python-cairocffi, python2-cairocffi): Move variables from gtk to python module to avoid circular dependency. Reported by Mark H Weaver <mhw@netris.org>
* gnu: matplotlib: Add gtk3 backends and optional dependency. Adjust inputs.Federico Beffa2014-12-18
| | | | | | | * gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Add gtk3 backends with the necessary inputs and a 'configure-environment' phase. Add the optional 'python-pillow' dependency. Move 'python-pyparsing' from 'inputs' to 'propagated-inputs' as it is required at run time.
* gnu: Add cairocffi.Federico Beffa2014-12-18
| | | | * gnu/packages/gtk.scm (python-cairocffi, python2-cairocffi): New variables.
* gnu: Add xcffibFederico Beffa2014-12-18
| | | | * gnu/packages/python.scm (python-xcffib, python2-xcffib): New variables.
* build/python-build-system: Fix easy-install.pth collisions.Federico Beffa2014-12-18
| | | | | * guix/build/python-build-system.scm (rename-pth-file): New rename-pth-file phase and corresponding function.
* gnu: icecat: Build with PulseAudio support.Ludovic Courtès2014-12-17
| | | | | * gnu/packages/gnuzilla.scm (icecat)[arguments]: Add --enable-pulseaudio.
* gnu: linux-libre: Update to 3.18.1Jason Self2014-12-17
| | | | * gnu/packages/linux.scm (linux-libre): Update to version 3.18.1.
* gnu: Add Test::Simple.Ricardo Wurmus2014-12-17
| | | | | | * gnu/packages/perl.scm (perl-test-simple): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add Test::Deep.Ricardo Wurmus2014-12-17
| | | | | | * gnu/packages/perl.scm (perl-test-deep): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add Test::NoWarnings.Ricardo Wurmus2014-12-17
| | | | | | * gnu/packages/perl.scm (perl-test-nowarnings): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add Test::Tester.Ricardo Wurmus2014-12-17
| | | | | | * gnu/packages/perl.scm (perl-test-tester): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* Revert "gnu: python-numpy-bootstrap: Reduce matrix size in failing test."Federico Beffa2014-12-16
| | | | | This reverts commit 31557440c29f8d93b366422bfec4dab341eff79f as it did not provide the desired effect. The test is still failing.
* gnu: Add bedtoolsRicardo Wurmus2014-12-16
| | | | | | * gnu/packages/bioinformatics.scm (bedtools): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: tmux: Update to 1.9a.Tomáš Čech2014-12-16
| | | | | | * gnu/packages/tmux.scm (tmux): Update to 1.9a Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: samtools: disable tests for non-64-bit systemsRicardo Wurmus2014-12-16
| | | | | | | * gnu/packages/bioinformatics.scm (samtools): disable tests for all non-64-bit systems because of an upstream bug in the test data. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: groff: Disable parallel builds.Mark H Weaver2014-12-16
| | | | * gnu/packages/groff.scm (groff): Disable parallel builds.
* gnu: groff: Update to 1.22.3.Mark H Weaver2014-12-16
| | | | * gnu/packages/groff.scm (groff): Update to 1.22.3.
* gnu: ghostscript: Update to 9.14.0.Mark H Weaver2014-12-16
| | | | | * gnu/packages/ghostscript.scm (ghostscript): Update to 9.14.0. Change license to agpl3+.
* gnu: lcms: Update to 2.6.Mark H Weaver2014-12-16
| | | | * gnu/packages/ghostscript.scm (lcms): Update to 2.6.
* gnu: icecat: Apply security updates for CVE-2014-{1587,1590,1592,1593,1594}.Mark H Weaver2014-12-15
| | | | | | | | | | | | | | * gnu/packages/patches/icecat-CVE-2014-1587-bug-1042567.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1072847.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1079729.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1080312.patch, gnu/packages/patches/icecat-CVE-2014-1587-bug-1089207.patch, gnu/packages/patches/icecat-CVE-2014-1590.patch, gnu/packages/patches/icecat-CVE-2014-1592.patch, gnu/packages/patches/icecat-CVE-2014-1593.patch, gnu/packages/patches/icecat-CVE-2014-1594.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat): Add them.
* profiles: Fix removal of the next-to-last item in a profile.Ludovic Courtès2014-12-15
| | | | | | | | | | Fixes a bug whereby removing the next-to-last item in a profile would lead to an obscure error, as shown at <http://lists.gnu.org/archive/html/guix-devel/2014-12/msg00292.html>. Reported by Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>. * guix/profiles.scm (profile-derivation)[inputs]: Use (list info-dir "out") instead of just INFO-DIR.
* tests: Use 'test-assertm' for profiles.Ludovic Courtès2014-12-15
| | | | | | * tests/profiles.scm (test-assertm): New macro. ("profile-derivation"): Use it instead of 'test-assert' + 'run-with-store'.
* gnu: Add bullet.Tomáš Čech2014-12-15
| | | | | * gnu/packages/game-development.scm: New file * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu: Add vala.宋文武2014-12-15
| | | | * gnu/packages/gnome.scm (vala): New variable.
* gnu: youtube-dl: Update to 2014.12.15.Mark H Weaver2014-12-15
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2014.12.15.
* gnu: Add xfce4-battery-plugin.Mark H Weaver2014-12-14
| | | | * gnu/packages/xfce.scm (xfce4-battery-plugin): New variable.
* gnu: xfce4-panel: Support panel plugins from other packages.Mark H Weaver2014-12-14
| | | | | | | * gnu/packages/patches/xfce4-panel-plugins.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/xfce.scm (xfce4-panel): Add the patch, and a native search path specification for X_XFCE4_LIB_DIRS.
* gnu: python-numpy-bootstrap: Reduce matrix size in failing test.Federico Beffa2014-12-14
| | | | | * gnu/packages/python.scm (python-numpy-bootstrap): Add phase 'fix-failing-tests.
* gnu: Add xdotool.John Darrington2014-12-14
| | | | * gnu/packages/xdisorg.scm (xdotool): New variable.
* install: Use a low-memory nscd caching policy.Ludovic Courtès2014-12-14
| | | | | * gnu/system/install.scm (%nscd-minimal-caches): New variable. (installation-services): Use as 'nscd-service' argument.
* services: Make 'nscd-service' configurable; cache hosts/services by default.Ludovic Courtès2014-12-14
| | | | | | | | | | | | | | | Before that, as it was given an empty configuration file, nscd would actually have all its caches disabled. * gnu/services/base.scm (<nscd-configuration>, <nscd-cache>): New record types. (%nscd-default-caches, %nscd-default-configuration): New variables. (nscd.conf-file): New procedure. (nscd-service): Add 'config' parameter. Use 'nscd.conf-file', and pass its result as the '-f' parameter of nscd. * doc/guix.texi (Base Services): Update 'nscd-service' documentation accordingly. Document 'nscd-configuration', 'nscd-cache', '%nscd-default-configuration', and '%nscd-default-caches'.
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