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* gnu: mupdf: Update to 1.12.0 [fixes CVE-2017-15369].Leo Famulari2017-12-21
| | | | | | | | | | | | | | * gnu/packages/pdf.scm (mupdf): Update to 1.12.0. [source]: Remove obsolete patches. [inputs]: Add freeglut. * gnu/packages/patches/mupdf-CVE-2017-14685.patch, gnu/packages/patches/mupdf-CVE-2017-14686.patch, gnu/packages/patches/mupdf-CVE-2017-14687.patch, gnu/packages/patches/mupdf-CVE-2017-15587.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: Update and rename to... * gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch: ... new file.
* gnu: weechat: Update to 2.0.1.Tobias Geerinckx-Rice2017-12-21
| | | | * gnu/packages/irc.scm (weechat): Update to 2.0.1.
* gnu: Add perl-test-requiresinternet.Tobias Geerinckx-Rice2017-12-21
| | | | | * gnu/packages/perl-check.scm (perl-test-requiresinternet): New public variable.
* gnu: links: Fix-CVE-2017-11114.Leo Famulari2017-12-20
| | | | | | * gnu/packages/patches/links-CVE-2017-11114.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/web-browsers.scm (links)[source]: Use it.
* gnu: linux-libre: Update to 4.14.8.Mark H Weaver2017-12-20
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.8. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.71.Mark H Weaver2017-12-20
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.71.
* gnu: linux-libre@4.4: Update to 4.4.107.Mark H Weaver2017-12-20
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.107.
* gnu: microscheme: Fix home page.Ricardo Wurmus2017-12-20
| | | | | | * gnu/packages/avr.scm (microscheme)[home-page]: Use GitHub project page. Fixes <https://bugs.gnu.org/29791>.
* gnu: gpgme: Build with the latest GnuPG.Leo Famulari2017-12-20
| | | | | * gnu/packages/gnupg.scm (gpgme)[inputs]: Use the latest gnupg package. [arguments]: Keep a reference to the gnupg package used for build.
* gnu: python-pygpgme: Use GnuPG 1 for the test suite.Leo Famulari2017-12-20
| | | | | * gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme)[inputs]: Use gnupg-1 and make it a native-input.
* gnu: libassuan: Update to 2.5.1.Leo Famulari2017-12-20
| | | | * gnu/packages/gnupg.scm (libassuan): Update to 2.5.1.
* gnu: exim: Update to 4.90.Tobias Geerinckx-Rice2017-12-20
| | | | * gnu/packages/mail.scm (exim): Update to 4.90.
* gnu: rng-tools: Update to 6.1.Leo Famulari2017-12-20
| | | | | | | | | | | | | | | | | | Rng-tools development appears to have moved to GitHub [0]: "NOTE: The rng-tools project hasn't seen updates in some time, but is still in active use. To facilitate ongoing development, the rng-tools project is moved to here: https://github.com/nhorman/rng-tools" [0] https://sourceforge.net/p/gkernel/wiki/Home/ * gnu/packages/linux.scm (rng-tools): Update to 6.1. [source]: Use new upstream URL and give a descriptive file-name. [arguments]: Add a 'bootstrap' phase. [native-inputs]: Add autoconf, automake, and pkg-config. [inputs]: Add sysfsutils.
* gnu: libressl: Update to 2.6.4.Rutger Helling2017-12-20
| | | | | | * gnu/packages/tls.scm (libressl): Update to 2.6.4. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: babl: Update to 0.1.38.Leo Famulari2017-12-20
| | | | * gnu/packages/gimp.scm (babl): Update to 0.1.38.
* gnu: webkitgtk: Update to 2.18.4 [fixes CVE-2017-{7156,13856,13866,13870}].Leo Famulari2017-12-19
| | | | * gnu/packages/webkit.scm (webkitgtk): Update to 2.18.4.
* gnu: r-htmltable: Update to 1.11.0.Ricardo Wurmus2017-12-19
| | | | | * gnu/packages/web.scm (r-htmltable): Update to 1.11.0. [propagated-inputs]: Add r-dplyr, r-htmltools, r-rstudioapi, and r-tidyr.
* gnu: r-testthat: Update to 2.0.0.Ricardo Wurmus2017-12-19
| | | | | * gnu/packages/statistics.scm (r-testthat): Update to 2.0.0. [propagated-inputs]: Add r-cli, r-rlang, and r-withr.
* gnu: Add r-cli.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/cran.scm (r-cli): New variable.
* gnu: r-hardyweinberg: Update to 1.5.9.Ricardo Wurmus2017-12-19
| | | | | * gnu/packages/cran.scm (r-hardyweinberg): Update to 1.5.9. [propagated-inputs]: Add r-rsolnp.
* gnu: Add r-rsolnp.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/cran.scm (r-rsolnp): New variable.
* gnu: Add r-truncnorm.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/cran.scm (r-truncnorm): New variable.
* gnu: r-curl: Update to 3.1.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/web.scm (r-curl): Update to 3.1.
* gnu: r-ade4: Update to 1.7-10.Ricardo Wurmus2017-12-19
| | | | | * gnu/packages/statistics.scm (r-ade4): Update to 1.7-10. [propagated-inputs]: Add r-mass.
* gnu: r-registry: Update to 0.5.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-registry): Update to 0.5.
* gnu: r-iterators: Update to 1.0.9.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-iterators): Update to 1.0.9.
* gnu: r-segmented: Update to 0.5-3.0.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-segmented): Update to 0.5-3.0.
* gnu: r-rprojroot: Update to 1.3-1.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-1.
* gnu: r-rcpparmadillo: Update to 0.8.300.1.0.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.300.1.0.
* gnu: r-plotrix: Update to 3.7.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-plotrix): Update to 3.7.
* gnu: r-git2r: Update to 0.20.0.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-git2r): Update to 0.20.0.
* gnu: r-backports: Update to 1.1.2.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-backports): Update to 1.1.2.
* gnu: r-yaml: Update to 2.1.16.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-yaml): Update to 2.1.16.
* gnu: r-reshape2: Update to 1.4.3.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3.
* gnu: r-digest: Update to 0.6.13.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/statistics.scm (r-digest): Update to 0.6.13.
* gnu: r-vcd: Update to 1.4-4.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/cran.scm (r-vcd): Update to 1.4-4.
* gnu: r-proxy: Update to 0.4-20.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/cran.scm (r-proxy): Update to 0.4-20.
* gnu: r-biomart: Update to 2.34.1.Ricardo Wurmus2017-12-19
| | | | | * gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.1. [propagated-inputs]: Add r-httr.
* gnu: r-gviz: Update to 1.22.2.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.2.
* gnu: r-gqtlstats: Update to 1.10.1.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.10.1.
* gnu: r-rtracklayer: Update to 1.38.2.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.2.
* gnu: r-limma: Update to 3.34.4.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.4.
* gnu: r-edger: Update to 3.20.2.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.2.
* gnu: r-biocstyle: Update to 2.6.1.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.1.
* gnu: r-dexseq: Update to 1.24.2.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2.
* gnu: r-vegan: Update to 2.4-5.Ricardo Wurmus2017-12-19
| | | | * gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5.
* upstream: Reject bogus archive type guesses.Ludovic Courtès2017-12-19
| | | | | | | | This would crash 'guix refresh -u' with source URLs ending in "…/v1.2.3". * guix/upstream.scm (package-update): Be stricter when determining ARCHIVE-TYPE.
* gnu: xfce4-session: Disable (duplicate) Gtk+ icon cache generation.Danny Milosavljevic2017-12-19
| | | | | * gnu/packages/xfce.scm (xfce4-session)[arguments]: Add make-flags to disable Gtk+ icon cache generation.
* services: urandom-seed: Try using a HWRNG to seed the Linux CRNG at boot.Leo Famulari2017-12-19
| | | | | | * gnu/services/base.scm (urandom-seed-shepherd-service): Try to read from '/dev/hwrng' at boot, as a supplement to any saved random seed. * doc/guix.texi (Base Services): Document the new feature.
* gnu: wxmaxima: Update to 17.10.1.Kei Kebreau2017-12-19
| | | | * gnu/packages/maths.scm (wxmaxima): Update to 17.10.1.
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