| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.12.0.
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* gnu/packages/bioinformatics.scm (r-biocstyle): [source] Update to 2.4.0.
[propagated-inputs]: Add r-bookdown, r-knitr, r-rmarkdown, r-yaml.
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* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.44.0.
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* gnu/packages/bioinformatics.scm (r-biocinstaller): Update to 1.26.0.
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* gnu/packages/bioinformatics.scm (r-biocgenerics): Update to 0.22.0.
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* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.10.0.
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* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.34.0.
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* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.42.0.
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* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.0.
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* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.38.0.
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* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.52.0.
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* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.0.
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* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.0.
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* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.58.0.
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* gnu/packages/bioinformatics.scm (r-geneplotter): Update to 1.54.0.
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* gnu/packages/bioinformatics.scm (r-annotate): Update to 1.54.0.
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* guix/import/cran.scm: Change Bioconductor release to 3.5.
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* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): New variable.
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* gnu/packages/bioinformatics.scm (r-delayedarray): New variable.
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* gnu/packages/bioinformatics.scm (r-bookdown): New variable.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.13.
(%linux-libre-hash): Update hash.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.25.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.64.
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* gnu/packages/patches/serf-comment-style-fix.patch,
gnu/packages/patches/serf-deflate-buckets-test-fix.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
* gnu/packages/web.scm (serf): Update to 1.3.9.
[source]: Remove patches.
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Fixes <https://bugs.gnu.org/26671>.
* gnu/packages/web.scm (serf)[arguments]<#:phases>: Add 'disable-broken-tests'.
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* gnu/packages/kodi.scm (kodi): Update to 18.0_alpha-3-749c61e.
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* gnu/packages/tor.scm (tor): Update to 0.3.0.6.
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* gnu/packages/gnome.scm (simple-scan): Update to 3.24.1.
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* gnu/packages/databases.scm (mdbtools): New variable.
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This hash got reset back to 1.19.2 when 1f49cd546ec was merged (1524851f58d).
* gnu/packages/xorg.scm (xorg-server-1.19.3)[source]: Update sha256 checksum.
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This is a followup to e1f68c96685fd607fcf00f08edd2f9cdfafabe2e.
* gnu/packages/pulseaudio.scm (libsamplerate)[license]: Change GPL2+ to BSD-2.
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* gnu/packages/patches/mesa-fix-32bit-test-failures.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa)[source]: Use it.
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* gnu/packages/patches/libsndfile-armhf-type-checks.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pulseaudio.scm (libsndfile)[source]: Use it.
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* gnu/packages/gtk.scm (gtk+): Update 3.22.12.
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* gnu/packages/patches/mesa-skip-disk-cache-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gl.scm (mesa): Update to 17.0.4.
[source]: Adapt URI to new directory structure.
[arguments]: End phases on #t. Remove stray whitespaces.
[home-page]: Use HTTPS.
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* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.80.
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* gnu/packages/gtk.scm (gdk-pixbuf): Update to 2.36.6.
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* gnu/packages/video.scm (libva): Update to 1.8.1.
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* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.79.
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* gnu/packages/pulseaudio.scm (libsamplerate): Update to 0.1.9.
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This is to adjust for the inputs and arguments change of xorg-server proper.
* gnu/packages/xorg.scm (xorg-server-1.19.2): Rename to ...
(xorg-server-1.19.3): ... this. Update version and origin.
* gnu/packages/gtk.scm (gtk+)[native-inputs]: Adjust accordingly.
[arguments]<#:disallowed-references>: Likewise.
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* gnu/packages/xorg.scm (xorg-server, xorg-server-xwayland): Update to 1.19.3.
[native-inputs]: Remove FONT-UTIL, LIBTOOL, AUTOMAKE and AUTOCONF.
[arguments]: Remove 'bootstrap' phase.
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* gnu/packages/xdisorg.scm (libdrm): Update to 2.4.77.
* gnu/packages/patches/libdrm-symbol-check.patch: Adjust to upstream changes.
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* gnu/packages/xorg.scm (libpciaccess): Update to 0.13.5.
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