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* gnu: gnucash: Activate database support.Guillaume Le Vaillant2019-11-26
| | | | | | | | * gnu/packages/gnucash.scm (gnucash)[inputs]: Add libdbi and libdbi-drivers. [arguments]: Remove '-DWITH_SQL=OFF' from 'configure-flags' and add 'GNC_DBD_DIR' to program wrapping. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add libdbi-drivers.Guillaume Le Vaillant2019-11-26
| | | | | | * gnu/packages/databases.scm (libdbi-drivers): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add libdbi.Guillaume Le Vaillant2019-11-26
| | | | | | * gnu/packages/databases.scm (libdbi): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add pam-mount.Guillaume Le Vaillant2019-11-26
| | | | | | | | * gnu/packages/admin.scm (pam-mount): New variable. * gnu/packages/patches/pam-mount-luks2-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add libhx.Guillaume Le Vaillant2019-11-26
| | | | | | * gnu/packages/c.scm (libhx): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* daemon: boost::format: Fix typo "referred".Vagrant Cascadian2019-11-26
| | | | | | | * nix/boost/format/exceptions.hpp (too_few_args): Fix typo. (too_many_args): Fix typo. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* guix build: '--keep-failed' implies '--no-offload'.Ludovic Courtès2019-11-26
| | | | | | * guix/scripts/build.scm (set-build-options-from-command-line): Pass #:offload? #f when 'keep-failed? is true. * doc/guix.texi (Common Build Options): Document it.
* Use 'offload?' instead of 'build-hook?' internally.Ludovic Courtès2019-11-26
| | | | | | | | | | | | | | | | | | | | * guix/scripts/archive.scm (%default-options): Replace 'build-hook?' with 'offload?'. * guix/scripts/build.scm (set-build-options-from-command-line): Pass #:offload? instead of #:use-build-hook?. (%standard-build-options): Use the 'offload? key instead of 'build-hook?. (%default-options): Replace 'build-hook?' with 'offload?'. * guix/scripts/copy.scm (%default-options): Likewise. * guix/scripts/deploy.scm (%default-options): Likewise. * guix/scripts/environment.scm (%default-options): Likewise. * guix/scripts/pack.scm (%default-options): Likewise. * guix/scripts/package.scm (%default-options): Likewise. * guix/scripts/pull.scm (%default-options): Likewise. * guix/scripts/system.scm (%default-options): Likewise. * guix/scripts/time-machine.scm (%default-options): Likewise. * guix/store.scm (set-build-options): Have #:use-build-hook? default to *unspecified*. Add #:offload?. Add call to 'warn-about-deprecation' when #:use-build-hook? is specified.
* guix build, daemon: Rename "--no-build-hook" to "--no-offload".Ludovic Courtès2019-11-26
| | | | | | | | | | | | | | | | This is a followup to bc69ea2d605810cc32e13ed03d5848b8dc358b61. * guix/scripts/build.scm (show-build-options-help): Rename "--no-build-hook" to "--no-offload". (%standard-build-options): Likewise, and warn when "--no-build-hook" is passed. * nix/nix-daemon/guix-daemon.cc (options): Add "--no-offload" and mark "--no-build-hook" as hidden. * guix/scripts/offload.scm: Adjust comment. * doc/guix.texi (Invoking guix-daemon, Common Build Options): Replace "--no-build-hook" with "--no-offload". * etc/completion/fish/guix.fish, etc/completion/zsh/_guix: Adjust accordingly.
* doc: cookbook: Add cross-references to the Guile manual.Ludovic Courtès2019-11-26
| | | | | * doc/guix-cookbook.texi (A Scheme Crash Course): Add cross-reference to the Guile manual.
* doc: cookbook: Use @result{} & co. instead of a '>' prompt.Ludovic Courtès2019-11-26
| | | | | * doc/guix-cookbook.texi (A Scheme Crash Course) (Extended example): Use @result{}, @print{}, and @error{}.
* doc: cookbook: Use Texinfo quotes.Ludovic Courtès2019-11-26
| | | | | * doc/guix-cookbook.texi: Use Texinfo quotes ``like this'' instead of straight quotes or curly quotes.
* doc: cookbook: Add cross-reference about ./pre-inst-env.Ludovic Courtès2019-11-26
| | | | | * doc/guix-cookbook.texi (Direct checkout hacking): Refer to "Running Guix Before It Is Installed".
* doc: cookbook: Use @lisp for Scheme snippets.Ludovic Courtès2019-11-26
| | | | | * doc/guix-cookbook.texi: Use @lisp instead of @example where appropriate.
* tests: Avoid unnecessary use of 'mock'.Ludovic Courtès2019-11-26
| | | | | * tests/build-utils.scm ("wrap-script, simple case"): Use the real 'which' instead of mocking it.
* tests: Avoid (catch 'srfi-34 …) form.Ludovic Courtès2019-11-26
| | | | | * tests/build-utils.scm ("wrap-script, raises condition"): Use 'guard' instead of "catch 'srfi-34".
* gnu: linux-libre: Update to 5.3.13.Mark H Weaver2019-11-25
| | | | | * gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.13. (linux-libre-5.3-pristine-source): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.86.Mark H Weaver2019-11-25
| | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.86. (linux-libre-4.19-pristine-source): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.156.Mark H Weaver2019-11-25
| | | | | * gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.156. (linux-libre-4.14-pristine-source): Update hash.
* gnu: Add netcat-openbsd.Alex Griffin2019-11-25
| | | | * gnu/packages/admin.scm (netcat-openbsd): New variable.
* gnu: r-rrcov: Update to 1.4-9.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/statistics.scm (r-rrcov): Update to 1.4-9.
* gnu: r-future: Update to 1.15.1.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-future): Update to 1.15.1.
* gnu: r-epi: Update to 2.40.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-epi): Update to 2.40.
* gnu: r-vioplot: Update to 0.3.3.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-vioplot): Update to 0.3.3.
* gnu: mes: Update to 0.21.Jan Nieuwenhuizen2019-11-25
| | | | * gnu/packages/mes.scm (mes): Update to 0.21.
* gnu: guile-gi: Update to 0.2.1.Ricardo Wurmus2019-11-25
| | | | | | * gnu/packages/guile-xyz.scm (guile-gi): Update to 0.2.1. [arguments]: Add phase to start Xorg server for tests. [native-inputs]: Add xorg-server.
* gnu: Add bsequencer.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/music.scm (bsequencer): New variable.
* gnu: r-bookdown: Update to 0.16.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-bookdown): Update to 0.16.
* gnu: r-protviz: Update to 0.5.1.Ricardo Wurmus2019-11-25
| | | | | * gnu/packages/cran.scm (r-protviz): Update to 0.5.1. [inputs]: Remove perl and python-2.
* gnu: r-rnifti: Update to 1.0.0.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-rnifti): Update to 1.0.0.
* gnu: r-tidytree: Update to 0.3.0.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-tidytree): Update to 0.3.0.
* gnu: r-sjplot: Update to 2.8.0.Ricardo Wurmus2019-11-25
| | | | | | * gnu/packages/cran.scm (r-sjplot): Update to 2.8.0. [propagated-inputs]: Remove r-broom and r-nlme; add r-effectsize and r-parameters.
* gnu: r-tidyverse: Update to 1.3.0.Ricardo Wurmus2019-11-25
| | | | | * gnu/packages/cran.scm (r-tidyverse): Update to 1.3.0. [propagated-inputs]: Add r-pillar.
* gnu: r-parameters: Update to 0.3.0.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-parameters): Update to 0.3.0.
* gnu: r-abn: Update to 2.2.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-abn): Update to 2.2.
* gnu: r-limsolve: Update to 1.5.6.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-limsolve): Update to 1.5.6.
* gnu: r-prodlim: Update to 2019.11.13.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-prodlim): Update to 2019.11.13.
* gnu: r-webshot: Update to 0.5.2.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-webshot): Update to 0.5.2.
* gnu: r-insight: Update to 0.7.0.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-insight): Update to 0.7.0.
* gnu: Add r-effectsize.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/cran.scm (r-effectsize): New variable.
* gnu: r-rcppeigen: Update to 0.3.3.7.0.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.7.0.
* gnu: r-rlang: Update to 0.4.2.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/statistics.scm (r-rlang): Update to 0.4.2.
* gnu: r-digest: Update to 0.6.23.Ricardo Wurmus2019-11-25
| | | | * gnu/packages/statistics.scm (r-digest): Update to 0.6.23.
* gnu: r-pheatmap: Move to (gnu packages cran).Ricardo Wurmus2019-11-25
| | | | | * gnu/packages/statistics.scm (r-pheatmap): Move from here... * gnu/packages/cran.scm (r-pheatmap): ...to here.
* gnu: r-scales: Update to 1.1.0.Ricardo Wurmus2019-11-25
| | | | | * gnu/packages/cran.scm (r-scales): Update to 1.1.0. [propagated-inputs]: Remove r-rcpp; add r-farver and r-lifecycle.
* gnu: r-scales: Move to (gnu packages cran).Ricardo Wurmus2019-11-25
| | | | | * gnu/packages/statistics.scm (r-scales): Move variable from here... * gnu/packages/cran.scm (r-scales): ...to here.
* gnu: sdsl-lite: Don't use bundled libraries.Efraim Flashner2019-11-25
| | | | | | | * gnu/packages/datastructures.scm (sdsl-lite)[source]: Remove bundled libraries in a snippet. Add patch to link to external libraries. [arguments]: Add phase to install static library. [native-inputs]: Add libdivsufsort.
* gnu: sdsl-lite: Remove unused inputs.Efraim Flashner2019-11-25
| | | | | | | | Documentation also wants graphviz, which drastically increases 'guiz size sdsl-lite'. * gnu/packages/datastructures.scm (sdsl-lite)[native-inputs]: Remove doxygen.
* gnu: libdivsufsort: Move to datastructures.scm.Efraim Flashner2019-11-25
| | | | | * gnu/packages/bioinformatics.scm (libdivsufsort): Move to ... * gnu/packages/datastructures.scm: ... here.
* gnu: Add boost-static.Efraim Flashner2019-11-25
| | | | * gnu/packages/boost.scm (boost-static): New variable.
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