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* gnu: r-shiny: Add missing inputs.Ricardo Wurmus2020-03-25
| | | | | | * gnu/packages/cran.scm (r-shiny)[propagated-inputs]: Add r-later, r-promises, r-rlang, and r-withr. [native-inputs]: Add gfortran.
* gnu: r-mast: Add r-knitr to native inputs.Ricardo Wurmus2020-03-25
| | | | * gnu/packages/bioconductor.scm (r-mast)[native-inputs]: Add r-knitr.
* gnu: poetry: Update to 1.0.5.Tanguy Le Carrour2020-03-24
| | | | | | | | | | | * gnu/packages/python-xyz.scm (poetry): Update to 1.0.5. [propagated-inputs] Add python-clikit, python-importlib-metadata, python-keyring, and python-pexpect. Remove python-msgpack and python-glob2. [home-page] Update URL. [arguments] Remove 'patch-setup-py' phase, and adjust required versions of keyring, pyrsistent and importlib-metadata. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-cachy: Update to 0.3.0.Tanguy Le Carrour2020-03-24
| | | | | | | | * gnu/packages/python-xyz.scm (python-cachy): Update to 0.3.0. [arguments]: Replace the 'check' phase. [native-inputs]: Add memcached and python-pifpaf. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add python-pifpaf.Tanguy Le Carrour2020-03-24
| | | | | | * gnu/packages/python-xyz.scm (python-pifpaf): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add python-daiquiri.Tanguy Le Carrour2020-03-24
| | | | | | * gnu/packages/python-xyz.scm (python-daiquiri): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add python-json-logger.Tanguy Le Carrour2020-03-24
| | | | | | * gnu/packages/python-xyz.scm (python-json-logger): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add python-xattr.Tanguy Le Carrour2020-03-24
| | | | | | * gnu/packages/python-xyz.scm (python-xattr): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-fakeredis: Update to 1.2.1.Tanguy Le Carrour2020-03-24
| | | | | | | * gnu/packages/databases.scm (python-fakeredis): Update to 1.2.1. [propagated-inputs]: Add python-sortedcontainers. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-clikit: Update to 0.4.2.Tanguy Le Carrour2020-03-24
| | | | | | * gnu/packages/python-xyz.scm (python-clikit): Update to 0.4.2. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-sortedcontainers: Add missing propagated-inputs.Tanguy Le Carrour2020-03-24
| | | | | | | | * gnu/packages/python-xyz.scm (python-sortedcontainers): [propagated-inputs] Add python-appdirs, python-distlib, python-filelock, python-importlib-metadata and python-six. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-cachecontrol: Add missing propagated-input.Tanguy Le Carrour2020-03-24
| | | | | | | * gnu/packages/python-web.scm (python-cachecontrol): [propagated-inputs]: Add python-msgpack. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-msgpack: Update to 1.0.0.Tanguy Le Carrour2020-03-24
| | | | | | | | * gnu/packages/python-xyz.scm (python-msgpack): Update to 1.0.0. (python-msgpack-transitional)[version,source]: New fields to avoid updating this package. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-pastel: Update to 0.2.0.Tanguy Le Carrour2020-03-24
| | | | | | * gnu/packages/graphics.scm (python-pastel): Update to 0.2.0. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-jsonschema: Update to 3.2.0.Tanguy Le Carrour2020-03-24
| | | | | | | | * gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.2.0. [propagated-inputs]: Add python-importlib-metadata. [arguments]: Use add-installed-pythonpath to make a test pass. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-pexpect: Update to 4.8.0.Tanguy Le Carrour2020-03-24
| | | | | | | * gnu/packages/python-xyz.scm (python-pexpect): Update to 4.8.0. [arguments]: Disable failing test. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: perl-mail-sendmail: Add line above definition.Paul Garlick2020-03-24
| | | | * gnu/packages/perl.scm (perl-mail-sendmail): Add line.
* gnu: Add perl-mail-sendmail.Paul Garlick2020-03-24
| | | | * gnu/packages/perl.scm (perl-mail-sendmail): New variable.
* scripts: lint: Handle store connections for lint checkers.Christopher Baines2020-03-24
| | | | | | | | | | | | Rather than individual checkers opening up a connection to the store for each package to check, if any checker requires a store connection, open a connection and pass it to all checkers that would use it. This makes running the derivation checker much faster for multiple packages. * guix/scripts/lint.scm (run-checkers): Add a #:store argument, and pass the store to checkers if they require a store connection. (guix-lint): Establish a store connection if any checker requires one, and pass it through to run-checkers.
* lint: Add a #:store argument to check-derivationChristopher Baines2020-03-24
| | | | | | | | This can then be used to avoid opening up a store connection each time a package needs checking. * guix/lint.scm (check-derivation): Add a #:store argument, and pull the handling of the store connection out of the try function.
* lint: Mark the derivation checker as requiring a store connection.Christopher Baines2020-03-24
| | | | | * guix/lint.scm (%local-checkers): Mark the derivation checker as requiring a store connection.
* lint: Add a requires-store? field to the checker record.Christopher Baines2020-03-24
| | | | | | | | | This can then be used to mark checkers that require a store connection, which will enable passing a connection in, avoiding the overhead of establishing a connection inside the check function when it's run for lots of different packages. * guix/lint.scm (<lint-checker>): Add requires-store? to the record type.
* gnu: Add Docusign API Python client.Josh Marshall2020-03-24
| | | | | | * gnu/packages/python-xyz.scm (python-docusign-esign): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* doc: Document that a working environment for building Guix requires "--pure".base-for-series-3284Danny Milosavljevic2020-03-24
| | | | | * doc/guix.texi (Invoking guix environment): Document that a working environment for building Guix requires "--pure".
* guix system: Fix mistaken 'guix pull' warning upon 'reconfigure'.Ludovic Courtès2020-03-24
| | | | | | | | | | Fixes <https://bugs.gnu.org/38196>. Reported by Florian Pelz <pelzflorian@pelzflorian.de>. * guix/scripts/system.scm (maybe-suggest-running-guix-pull): Check whether 'current-profile' returns true instead of checking for the existence of ~root/.config/guix/current. That way, "sudo guix system reconfigure" no longer emits a warning in that case.
* gnu: automake: Add version 1.16.2.Ludovic Courtès2020-03-24
| | | | * gnu/packages/autotools.scm (automake-1.16.2): New variable.
* pack: Do not store extended attributes in squashfs images.Ludovic Courtès2020-03-24
| | | | * guix/scripts/pack.scm (squashfs-image)[build](mksquashfs): Pass "-no-xattrs".
* ui: 'show-manifest-transaction' tabulates package lists for install/remove.base-for-series-3283Ludovic Courtès2020-03-24
| | | | | | | It also removes the store file name from the output. * guix/ui.scm (show-manifest-transaction)[package-strings]: Rewrite to use 'tabulate'. Remove 'item' parameter and adjust callers.
* ui: 'show-manifest-transaction' tabulates upgraded package lists.Ludovic Courtès2020-03-24
| | | | | | | | | | This also changes "1.0.0 → 1.0.0" to "(dependencies changed)", which is probably less confusing. * guix/ui.scm (tabulate): New procedure. (show-manifest-transaction)[upgrade-string]: Rewrite to take lists of names, versions, and outputs instead of single elements. Use 'tabulate'. Adjust callers accordingly.
* import: crate: Deduplicate dependencies.Martin Becze2020-03-24
| | | | | | * guix/import/crate.scm (crate-version-dependencies): Deduplicate crate dependencies. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add guile3.0-semver.Martin Becze2020-03-24
| | | | | | * gnu/packages/guile-xyz.scm (guile3.0-semver): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: nano: Update to 4.9.Efraim Flashner2020-03-24
| | | | * gnu/packages/nano.scm (nano): Update to 4.9.
* doc: Fix typo in example.Naga Malleswari2020-03-24
| | | | | | | * doc/guix.texi (Base Services)[file->udev-rule]: Correct misspelt "user-account". Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* doc: Fix typo.Naga Malleswari2020-03-24
| | | | | | * doc/guix.texi (Invoking guix time-machine): Fix typo. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: Add qgis.Guillaume Le Vaillant2020-03-24
| | | | | | | * gnu/packages/geo.scm (qgis): New variable. Co-authored-by: Wiktor Żelazny <wzelazny@vurv.cz> Co-authored-by: Arun Isaac <arunisaac@systemreboot.net>
* licenses: Add QWT 1.0 license.Arun Isaac2020-03-24
| | | | | | * guix/licenses.scm (qwt1.0): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* licenses: Add Open Government Licence for Public Sector Information.Arun Isaac2020-03-24
| | | | | | * guix/licenses.scm (ogl-psi1.0): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: Add saga.Guillaume Le Vaillant2020-03-24
| | | | * gnu/packages/geo.scm (saga): New variable.
* gnu: Add grass.Guillaume Le Vaillant2020-03-24
| | | | * gnu/packages/geo.scm (grass): New variable.
* gnu: Add python-owslib.Guillaume Le Vaillant2020-03-24
| | | | * gnu/packages/python-xyz.scm (python-owslib): New variable.
* gnu: r-harmony: Update to 0.1.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/cran.scm (r-harmony): Update to 0.1. [native-inputs]: Add autoconf.
* gnu: r-shiny: Update to 1.4.0.2.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/cran.scm (r-shiny): Update to 1.4.0.2.
* gnu: r-multiassayexperiment: Update to 1.12.5.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.5. [native-inputs]: Add r-knitr.
* gnu: r-bigpint: Update to 1.2.2.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/bioconductor.scm (r-bigpint): Update to 1.2.2. [native-inputs]: Add r-knitr.
* gnu: r-biosigner: Update to 1.14.4.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/bioconductor.scm (r-biosigner): Update to 1.14.4.
* gnu: r-gosemsim: Update to 2.12.1.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.1. [native-inputs]: Add r-knitr.
* gnu: r-tximport: Update to 1.14.2.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/bioinformatics.scm (r-tximport): Update to 1.14.2. [native-inputs]: Add r-knitr.
* gnu: r-caret: Update to 6.0-86.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/cran.scm (r-caret): Update to 6.0-86. [native-inputs]: Add r-knitr.
* gnu: r-batchtools: Update to 0.9.13.Ricardo Wurmus2020-03-24
| | | | | * gnu/packages/cran.scm (r-batchtools): Update to 0.9.13. [native-inputs]: Add r-knitr.
* gnu: r-mcmc: Update to 0.9-7.Ricardo Wurmus2020-03-24
| | | | * gnu/packages/cran.scm (r-mcmc): Update to 0.9-7.
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