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* gnu: Use the test-only time zone database where appropriate.Leo Famulari2020-04-17
| | | | | | | | | | * gnu/packages/backup.scm (duplicity)[inputs]: Remove tzdata. [native-inputs]: Add tzdata-for-tests. * gnu/packages/finance.scm (ledger): Likewise. * gnu/packages/compression.scm (lhasa)[native-inputs]: Use tzdata-for-tests. * gnu/packages/cran.scm (r-rstan)[native-inputs]: Likewise. * gnu/packages/databases.scm (mongodb)[native-inputs]: Likewise. * gnu/packages/kde-frameworks.scm (kdelibs4support)[native-inputs]: Likewise.
* gnu: trezord: Update to 2.0.29.Martin Becze2020-04-17
| | | | | | * gnu/packages/finance.scm (trezord): Update to 2.0.29. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* ui: Fix typos, 80-col & grammar in comments & docstrings.Vincent Legoll2020-04-17
| | | | | | | | | | | * guix/ui.scm (load*): Fix comment line length. (leave-on-EPIPE): Fix typo in docstring. (substitutable-info): Fix typo in comment. (indented-string): Fix typo in docstring. (%package-metrics): Fix typo in comment. (run-guix): Fix grammar in docstring. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: fulcrum: Update to 1.1.0TomZ2020-04-17
| | | | | | * gnu/packages/finance.scm (fulcrum): Update to 1.1.0 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* doc: Update nar decompression examples.mikadoZero2020-04-17
| | | | | | | | * doc/guix.texi (Invoking guix archive): Show /gzip URL. Add cross-reference to "Invoking guix challenge". (Invoking guix challenge): Show /lzip URL. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* services: account: Have 'user-processes' depend on 'user-homes'.Ludovic Courtès2020-04-17
| | | | | | | | | Until now, 'user-homes' happened to start right after 'user-processes' and before services that depend on a home directory but the dependency was not explicit. This addresses it. * gnu/system/shadow.scm (account-service-type): Extend USER-PROCESSES-SERVICE-TYPE.
* services: Move 'user-processes' to (gnu services shepherd).Ludovic Courtès2020-04-17
| | | | | | | * gnu/services/base.scm (%do-not-kill-file) (user-processes-shepherd-service, user-processes-service-type): Move to... * gnu/services/shepherd.scm: ... here.
* maint: Provide the configuration file in the VM image.Ludovic Courtès2020-04-17
| | | | | | | | | | | | This fixes a bug introduced in 362bcdb1b076c8c46f71781add56dfbe532736dc whereby the VM image would no longer contain /etc/config.scm, contrary to what the manual says. Reported by dbdude on #guix. * Makefile.am (release): Pass '--save-provenance' to 'guix system vm-image'. * doc/guix.texi (Running Guix in a VM): Adjust file name accordingly.
* gnu: linux-libre: Update to 5.4.33.Mark H Weaver2020-04-17
| | | | | * gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.33. (linux-libre-5.4-pristine-source): Update hash.
* gnu: linux-libre@5.6: Update to 5.6.5.Mark H Weaver2020-04-17
| | | | | * gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.5. (linux-libre-5.6-pristine-source): Update hash.
* gnu: linux-libre@4.19: Update to 4.19.116.Mark H Weaver2020-04-17
| | | | | * gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.116. (linux-libre-4.19-pristine-source): Update hash.
* gnu: ungoogled-chromium: Update to 81.0.4044.113-0.b484ad4 [fixes ↵Marius Bakke2020-04-17
| | | | | | | CVE-2020-6457]. * gnu/packages/chromium.scm (%chromium-version): Set to 81.0.4044.113. (%chromium-origin): Update hash.
* status: Allow double-click select of URLs.TomZ2020-04-17
| | | | | | | | Various places while downloading or compiling guix prints the source URL. This change makes the URL easier to use by placing a space between the URL and the trailing dots. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: python-pygenometracks: Update to 3.3.Ricardo Wurmus2020-04-17
| | | | | | | * gnu/packages/bioinformatics.scm (python-pygenometracks): Update to 3.3. [arguments]: Add phase "relax-requirements"; disable tests. [propagated-inputs]: Remove python-configparser and python-hicexplorer; add python-gffutils, python-pysam, and python-tqdm.
* gnu: Add python-hicmatrix.Ricardo Wurmus2020-04-17
| | | | * gnu/packages/bioinformatics.scm (python-hicmatrix): New variable.
* gnu: python-cooler: Update to 0.8.7.Ricardo Wurmus2020-04-17
| | | | | | | | * gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7. [propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and python-simplejson. [native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add python-pytest.
* gnu: python-pybigwig: Update to 0.3.17.Ricardo Wurmus2020-04-17
| | | | * gnu/packages/bioinformatics.scm (python-pybigwig): Update to 0.3.17.
* gnu: python-tables: Update to 3.6.1.Ricardo Wurmus2020-04-17
| | | | | * gnu/packages/python-xyz.scm (python-tables): Update to 3.6.1. [arguments]: Adjust use-gcc phase.
* gnu: python-podcastparser: Run tests.Pierre Langlois2020-04-17
| | | | | | | | * gnu/packages/gpodder.scm (python-podcastparser)[native-inputs]: Add python-coverage. [arguments]: Replace 'check phase and invoke "nosetests". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: gpodder: Run tests.Pierre Langlois2020-04-17
| | | | | | | | * gnu/packages/gpodder.scm (gpodder)[native-inputs]: Add python-coverage and python-minimock. [arguments]: Replace the 'check phase and invoke "make unittest". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: gpodder: Update to 3.10.15.Pierre Langlois2020-04-17
| | | | | | * gnu/packages/gpodder.scm (gpodder): Update to 3.10.15. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* maint: Build binary tarball without '-K'.Ludovic Courtès2020-04-17
| | | | | | This is a followup to 8b292ffd3cd969286ee9cbdb70fde8cf384b9b8b. * Makefile.am (guix-binary.%.tar.xz): Remove '-K' to allow for offloading.
* doc: Replace incorrect uses of @var with @code.Ludovic Courtès2020-04-17
| | | | | | | | | | | | @var is for meta-syntactic variables but it is used in some places for mere variables, which is incorrect and leads to inconsistent layout in PDF and HTML. * doc/guix.texi (package Reference, The Store Monad) (G-Expressions, operating-system Reference) (File Systems, Base Services, Log Rotation) (Networking Services, Invoking guix deploy): Replace incorrect uses of @var with @code.
* gnu: dovecot: Add libunwind input for arm.Pierre Langlois2020-04-17
| | | | | | * gnu/packages/mail.scm (dovecot)[inputs]: Add libunwind when targetting arm. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: khard: Move propagated-inputs to inputs.Efraim Flashner2020-04-17
| | | | | | | | | As a package one would install we can rely on wrapping the package and not propagating inputs to make it work correctly. * gnu/packages/mail.scm (khard)[propagated-inputs]: Move all python packages ... [inputs]: ... to here.
* gnu: khal: Move propagated inputs to inputs.Efraim Flashner2020-04-17
| | | | | | | | | As a package one would install we can rely on wrapping the package and not propagating inputs to make it work correctly. * gnu/packages/calendar.scm (khal)[propagated-inputs]: Move all python packages... [inputs]: ... to here.
* gnu: khal: Fix build with python-urwid-2.1.0.Efraim Flashner2020-04-17
| | | | | * gnu/packages/calendar.scm (khal)[source]: Download upstream patch to fix compatibility with newer python-urwid.
* gnu: diffoscope.scm: Add missing import.Christopher Baines2020-04-17
| | | | | | This follows on from 2d9886f7e8838d6aeb0cfb20a2a49fc7d8fb233c. * gnu/packages/diffoscope.scm: Import (gnu packages maths).
* gnu: diffoscope: Update to 141.Vagrant Cascadian2020-04-16
| | | | | | * gnu/packages/diffoscope (diffoscope): Update to 141. [arguments]: Add phase add-known-tools. [native-inputs]: Add hdf5.
* gnu: disorderfs: Update to 0.5.9.Vagrant Cascadian2020-04-16
| | | | * gnu/packages/file-systems (disorderfs): Update to 0.5.9.
* gnu: python-jedi: Fix test failure on some file systems.base-for-series-3577Marius Bakke2020-04-17
| | | | | | | | | Reported by sirgazil on #guix. * gnu/packages/patches/python-jedi-sort-project-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-xyz.scm (python-jedi)[source](patches): Add it. [arguments]: Run tests more verbosely while at it.
* gnu: xournalpp: Remove outdated comments.Nicolas Goaziou2020-04-16
| | | | | * gnu/packages/pdf.scm (xournalpp): Remove outdated comments. This is a followup to 9cb2f28c5a737576ec28099d69aa35ff687e7778.
* doc: Document building and installing from JSON files.Ricardo Wurmus2020-04-16
| | | | | | | | * doc/guix.texi (Invoking guix package): Augment pargraphs for "--install-from-file". (Invoking guix build): Document building from JSON files. * doc/package-hello.json: New file. * doc/local.mk (EXTRA_DIST): Add it.
* import/print: Don't factorize URI if there's no version match.Ricardo Wurmus2020-04-16
| | | | | * guix/import/print.scm (package->code): If FACTORIZE-URI returns just the unmodified string use that as the URI.
* import/utils: alist->package: Include arguments.Ricardo Wurmus2020-04-16
| | | | | * guix/import/utils.scm (alist->package): Process arguments field in input data and include it in the generated package.
* import/json: json->code: Handle files with more than one definition.Ricardo Wurmus2020-04-16
| | | | | | * guix/import/json.scm (json->code): Convert JSON arrays to lists of package definitions. (json->scheme-file): Write all expressions to the target file.
* import/utils: alist->package: Ignore known inputs.Ricardo Wurmus2020-04-16
| | | | | | | * guix/import/utils.scm (alist->package): Accept optional list of known inputs, which are excluded from the specification lookup. * guix/import/print.scm (package->code)[package-lists->code]: Handle inputs which are just symbols.
* import/print: package->code: Wrap S-expression in definition.Ricardo Wurmus2020-04-16
| | | | | * guix/import/print.scm (package->code): Return a definition, not just a package expression.
* import/json: Use json->code.Ricardo Wurmus2020-04-16
| | | | | * guix/import/json.scm (json->code): Export procedure. * guix/scripts/import/json.scm (guix-import-json): Use json->code.
* scripts/package: Handle JSON files.Ricardo Wurmus2020-04-16
| | | | | * guix/scripts/package.scm (%options): Support loading from JSON files when "install-from-file" is used.
* scripts/build: options->things-to-build: Handle .json files.Ricardo Wurmus2020-04-16
| | | | | * guix/scripts/build.scm (options->things-to-build): Handle files that end on .json.
* import/json: Add json->scheme-file.Ricardo Wurmus2020-04-16
| | | | * guix/import/json.scm (json->code, json->scheme-file): New procedures.
* import/print: package->code: Wrap build system value in module reference.Ricardo Wurmus2020-04-16
| | | | | * guix/import/print.scm (package->code): Return build system value with corresponding module.
* import/print: Return license with prefix.Ricardo Wurmus2020-04-16
| | | | * guix/import/print.scm (license->code): Prepend license: prefix.
* gnu: wireshark: Update to 3.2.3.Nicolas Goaziou2020-04-16
| | | | * gnu/packages/networking.scm (wireshark): Update to 3.2.3.
* gnu: python-hy: Update to 0.18.0.Efraim Flashner2020-04-16
| | | | | | | | * gnu/packages/python-xyz.scm (python-hy): Update to 0.18.0. [arguments]: Make all phases return #t. [propagated-inputs]: Remove python-clint, python-fastentrypoints. Add python-colorama. (python2-hy): Remove variable.
* gnu: python-icalendar: Update to 4.0.5.Efraim Flashner2020-04-16
| | | | * gnu/packages/python-xyz.scm (python-icalendar): Update to 4.0.5.
* gnu: toot: Update to 0.26.0.Efraim Flashner2020-04-16
| | | | * gnu/packages/mastodon.scm (toot): Update to 0.26.0.
* gnu: python-urwid: Update to 2.1.0.Efraim Flashner2020-04-16
| | | | * gnu/packages/python-xyz.scm (python-urwid): Update to 2.1.0.
* gnu: python-vobject: Update to 0.9.6.1.Efraim Flashner2020-04-16
| | | | * gnu/packages/python-xyz.scm (python-vobject): Update to 0.9.6.1.
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