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* gnu: r-gdtools: Update to 0.1.4.•••* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4. Ricardo Wurmus2017-04-06
* gnu: r-stringr: Update to 1.2.0.•••* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0. Ricardo Wurmus2017-04-06
* gnu: r-stringi: Update to 1.1.3.•••* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3. Ricardo Wurmus2017-04-06
* gnu: r-rcpp: Update to 0.12.10.•••* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10. Ricardo Wurmus2017-04-06
* gnu: r-digest: Update to 0.6.12.•••* gnu/packages/statistics.scm (r-digest): Update to 0.6.12. Ricardo Wurmus2017-04-06
* gnu: r-survival: Update to 2.41-3.•••* gnu/packages/statistics.scm (r-survival): Update to 2.41-3. Ricardo Wurmus2017-04-06
* gnu: r-mgcv: Update to 1.8-17.•••* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17. Ricardo Wurmus2017-04-06
* gnu: r-matrix: Update to 1.2-8.•••* gnu/packages/statistics.scm (r-matrix): Update to 1.2-8. Ricardo Wurmus2017-04-06
* gnu: r-lattice: Update to 0.20-35.•••* gnu/packages/statistics.scm (r-lattice): Update to 0.20-35. Ricardo Wurmus2017-04-06
* gnu: r-rprojroot: Update to 1.2.•••* gnu/packages/statistics.scm (r-rprojroot): Update to 1.2. Ricardo Wurmus2017-04-06
* gnu: r-htmltable: Update to 1.9.•••* gnu/packages/web.scm (r-htmltable): Update to 1.9. [propagated-inputs]: Add "r-checkmate" and "r-htmlwidgets". Ricardo Wurmus2017-04-06
* gnu: r-curl: Update to 2.4.•••* gnu/packages/web.scm (r-curl): Update to 2.4. Ricardo Wurmus2017-04-06
* gnu: r-genomeinfodb: Update to 1.10.3.•••* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.10.3. [propagated-inputs]: Add "r-rcurl". Ricardo Wurmus2017-04-06
* gnu: r-xvector: Update to 0.14.1.•••* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.14.1. Ricardo Wurmus2017-04-06
* gnu: r-bioccheck: Update to 1.10.1.•••* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.10.1. [propagated-inputs]: Remove "r-knitr" and "r-devtools". Ricardo Wurmus2017-04-06
* gnu: r-tidyr: Update to 0.6.1.•••* gnu/packages/statistics.scm (r-tidyr): Update to 0.6.1. [propagated-inputs]: Add "r-tibble". Ricardo Wurmus2017-04-06
* gnu: r-roxygen2: Update to 6.0.1.•••* gnu/packages/statistics.scm (r-roxygen2): Update to 6.0.1. [propagated-inputs]: Add "r-commonmark", "r-desc", "r-r6", and "r-xml2". Ricardo Wurmus2017-04-06
* gnu: Add r-commonmark.•••* gnu/packages/statistics.scm (r-commonmark): New variable. Ricardo Wurmus2017-04-06
* gnu: Add r-desc.•••* gnu/packages/statistics.scm (r-desc): New variable. Ricardo Wurmus2017-04-06
* gnu: r-readr: Update to 1.1.0.•••* gnu/packages/statistics.scm (r-readr): Update to 1.1.0. [propagated-inputs]: Remove "r-curl". Ricardo Wurmus2017-04-06
* gnu: r-tibble: Update to 1.3.0.•••* gnu/packages/statistics.scm (r-tibble): Update to 1.3.0. [propagated-inputs]: Remove "r-assertthat". Ricardo Wurmus2017-04-06
* gnu: r-jsonlite: Update to 1.3.•••* gnu/packages/web.scm (r-jsonlite): Update to 1.3. Ricardo Wurmus2017-04-06
* gnu: ldc-bootstrap: Delete failing test.•••* gnu/packages/ldc.scm (ldc-bootstrap)[arguments]: Delete failing test in build phase. Ricardo Wurmus2017-04-06
* gnu: guile-aspell: Switch to Guile 2.2.•••* gnu/packages/guile.scm (guile-aspell)[inputs]: Replace GUILE-2.0 with GUILE-2.2. Ludovic Courtès2017-04-06
* gnu: guile-aspell: Remove hard-coded "site/2.0" from $(guilesitedir).•••* gnu/packages/guile.scm (guile-aspell)[arguments]: Remove #:configure-flags. Add 'set-guilesitedir' phase. Ludovic Courtès2017-04-06
* gnu: guile-aspell: Update to 0.4.•••* gnu/packages/guile.scm (guile-aspell): Update to 0.4. [arguments] <#:phases>: Adjust 'set-libaspell-file-name' to new source tree layout. Ludovic Courtès2017-04-06
* system: Support the --root option in 'guix system'.•••Fixes <https://bugs.gnu.org/26271>. * guix/scripts/system.scm (perform-action): Add #:gc-root parameter and honor it. (show-help): Document the --root option. (%options): Add 'root'. (process-action): Pass 'root' option to perform-action as #:gc-root. * doc/guix.texi (Invoking guix system): Document '--root'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Chris Marusich2017-04-06
* build: Add and export procedure 'register-root*'.•••* guix/scripts/build.scm (register-root*): Add and export it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Chris Marusich2017-04-06
* environment: Deal with single-entry search paths.•••This is a followup to fcd75bdbfa99d14363b905afbf914eec20e69df8. * guix/scripts/environment.scm (create-environment): Check whether SEPARATOR is #f. Ludovic Courtès2017-04-05
* doc: Add "Documentation" section.•••* doc/guix.texi (Documentation): New node. Ludovic Courtès2017-04-05
* profiles: Generate database file for man pages.•••The mandb database file (index.db) is used by the "apropos" (whatis) or "man -k" commands. This change introduces a profile hook to generate such database file. * guix/profiles.scm (manual-database): New procedure. (%default-profile-hooks): Add it. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Maxim Cournoyer2017-04-05
* build-system/python: 'package-with-explicit-python' uses 'package-mapping'.•••* guix/build-system/python.scm (package-with-explicit-python) [package-variant, cut?]: New procedures. [transform]: Remove 'mlambdaq' form and input tuple handling. Use 'package-mapping'. Ludovic Courtès2017-04-05
* packages: Add 'package-mapping' and base 'package-input-rewriting' on it.•••* guix/packages.scm (package-mapping): New procedure. (package-input-rewriting): Rewrite in terms of 'package-mapping'. * tests/packages.scm ("package-mapping"): New test. * doc/guix.texi (Defining Packages): Document it. Ludovic Courtès2017-04-05
* Revert "gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'."•••This reverts commit 01fe019166fe8a925b3bf3b489792b52b1b6ca7a, which was unneeded because IlmBase is already listed as 'Requires' in 'OpenEXR.pc'. Ludovic Courtès2017-04-05
* Revert "gnu: bc: Update to 1.07."•••This reverts commit dfee7daedb760f1b1d7506829ca31633f4173356. It causes the linux-libre@4.9 build to hang (command-line usage works fine). Tobias Geerinckx-Rice2017-04-05
* gnu: Move audacity to audio.scm.•••* gnu/packages/audacity.scm: Remove file and move audacity... * gnu/packages/audio.scm: ...here. * gnu/local.mk: Remove reference to removed file. Kei Kebreau2017-04-05
* import cran: Distinguish Bioconductor data packages.•••* guix/import/cran.scm (bioconductor-package?): Exclude Bioconductor data packages. (bioconductor-data-package?): New procedure. Ricardo Wurmus2017-04-05
* gnu: sra-tools: Fix glibc naming conflict.•••* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Add build phase "patch-away-glibc-conflict" to fix a definition conflict with glibc 2.25. Ricardo Wurmus2017-04-05
* gnu: sra-tools: Use "modify-phases" syntax.•••* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use "modify-phases" syntax. Ricardo Wurmus2017-04-05
* gnu: diamond: Update to 0.8.37.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.37. Ben Woodcroft2017-04-05
* download: Update the GnuPG mirror list.•••* guix/download.scm (%mirrors) <gnupg>: Use HTTP for TU Wien mirror. Leo Famulari2017-04-05
* gnu: kdevelop: Update to 5.1.0.•••* gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.1.0. Thomas Danckaert2017-04-05
* gnu: bc: Update to 1.07.•••* gnu/packages/algebra.scm (bc): Update to 1.07. [native-inputs]: Add ed and texinfo. [arguments]: Use default ‘configure’ phase. Tobias Geerinckx-Rice2017-04-05
* gnu: bc: Actually use readline.•••* gnu/packages/algebra.scm (bc)[arguments]: Add ‘--with-readline’ to #:configure-flags. Tobias Geerinckx-Rice2017-04-05
* gnu: algebra: Re-order imports.•••* gnu/packages/algebra.scm: Order imports alphabetically. Tobias Geerinckx-Rice2017-04-05
* gnu: openexr: Add IlmBase include sub-directory to 'OpenEXR.pc'.•••* gnu/packages/graphics.scm (openexr)[arguments]: Add 'set-ilmbase-directory-in-pc-file' phase. Ludovic Courtès2017-04-05
* services: cuirass: Wait for networking.•••* gnu/services/cuirass.scm (cuirass-shepherd-service): Add 'networking' to 'requirements'. Ludovic Courtès2017-04-05
* build: Export register-root procedure.•••* guix/scripts/build.scm: Export register-root procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Chris Marusich2017-04-05
* gnu: icecat: Use bundled ICU to avoid crashes.•••* gnu/packages/gnuzilla.scm (icecat)[arguments] <#:configure-flags>: Temporarily comment out "--with-system-icu". Clément Lassieur2017-04-04
* gnu: icecat: Re-enable parallel build.•••* gnu/packages/gnuzilla.scm (icecat)[arguments]: Re-enable parallel build. Clément Lassieur2017-04-04
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