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* gnu: emacs-writeroom: Update to 3.9.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-writeroom): Update to 3.9.
* gnu: emacs-rainbow-delimiters: Update to 2.1.4.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-rainbow-delimiters): Update to 2.1.4.
* gnu: diffoscope: Add support for zstd compression.Vagrant Cascadian2019-12-15
| | | | | * gnu/packages/diffoscope (diffoscope)[native-inputs]: Add zstd. [arguments]: Add add-known-tools phase with support for zstd.
* gnu: emacs-find-file-in-project: Update to 5.7.7.Brett Gilio2019-12-15
| | | | | * gnu/packages/emacs-xyz.scm (emacs-find-file-in-project): Update to 5.7.7. [arguments]: Modify tests to use ert.
* gnu: emacs-elfeed: Update to 3.3.0.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-elfeed): Update to 3.3.0.
* gnu: emacs-org-trello: Update to 0.8.1.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-org-trello): Update to 0.8.1.
* gnu: emacs-jedi: Update to 0.2.8.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-jedi): Update to 0.2.8.
* gnu: emacs-ob-ipython: Update to 20180224.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-ob-ipython): Update to 20180224.
* gnu: emacs-rich-minority: Update to 1.0.3.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-rich-minority): Update to 1.0.3.
* gnu: emacs-paren-face: Update to 1.0.4.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-paren-face): Update to 1.0.4.
* gnu: emacs-undercover: Update to 0.6.1.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-undercover): Update to 0.6.1.
* gnu: emacs-fill-column-indicator: Update to 1.90.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-fill-column-indicator): Update to 1.90.
* gnu: emacs-direnv: Update to 2.0.0.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-direnv): Update to 2.0.0.
* gnu: emacs-async: Update to 1.9.4.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-async): Update to 1.9.4.
* gnu: emacs-doom-modeline: Update to 2.8.2.Brett Gilio2019-12-15
| | | | * gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 2.8.2.
* gnu: diffoscope: Update to 133.Vagrant Cascadian2019-12-15
| | | | * gnu/packages/diffoscope (diffoscope): Update to 133.
* gnu: abcl: Update to 1.6.0.Carlo Zancanaro2019-12-15
| | | | | | * gnu/packages/java.scm (abcl): Update to 1.6.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: texinfo: Add missing include.Mathieu Othacehe2019-12-15
| | | | | * gnu/packages/texinfo.scm (info-reader): Fix missing include, introduced by f5d670606354728a453b8cc962c4f85516007d13.
* gnu: Add theorafile.Pierre Neidhardt2019-12-15
| | | | * gnu/packages/video.scm (theorafile): New variable.
* gnu: info-reader: Fix cross-compilation.Mathieu Othacehe2019-12-15
| | | | | | * gnu/packages/texinfo.scm (info-reader)[arguments]: Add keep-only-info-reader phase to inherited texinfo package phases, so that fix-cross-configure phase is preserved.
* gnu: r-destiny: Update to 3.0.0.Ricardo Wurmus2019-12-15
| | | | | | | * gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0. [propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree, r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and r-tidyselect; remove r-igraph.
* gnu: r-siggenes: Update to 1.60.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-siggenes): Update to 1.60.0.
* gnu: r-bumphunter: Update to 1.28.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.28.0.
* gnu: r-minfi: Update to 1.32.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
* gnu: r-methylumi: Update to 2.32.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-methylumi): Update to 2.32.0.
* gnu: r-lumi: Update to 2.38.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-lumi): Update to 2.38.0.
* gnu: r-linnorm: Update to 2.10.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-linnorm): Update to 2.10.0.
* gnu: r-ioniser: Update to 2.10.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-ioniser): Update to 2.10.0.
* gnu: r-triform: Update to 1.28.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-triform): Update to 1.28.0.
* gnu: r-varianttools: Update to 1.28.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.0.
* gnu: r-heatplus: Update to 2.32.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.0.
* gnu: r-gosemsim: Update to 2.12.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.0.
* gnu: r-anota: Update to 1.34.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-anota): Update to 1.34.0.
* gnu: r-sigpathway: Update to 1.54.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.54.0.
* gnu: r-fgsea: Update to 1.12.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-fgsea): Update to 1.12.0.
* gnu: r-dose: Update to 3.12.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-dose): Update to 3.12.0.
* gnu: r-enrichplot: Update to 1.6.0.Ricardo Wurmus2019-12-15
| | | | | * gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.0. [propagated-inputs]: Remove r-upsetr.
* gnu: r-clusterprofiler: Update to 3.14.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.0.
* gnu: r-mlinterfaces: Update to 1.66.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.0.
* gnu: r-annaffy: Update to 1.58.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-annaffy): Update to 1.58.0.
* gnu: r-a4core: Update to 1.34.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-a4core): Update to 1.34.0.
* gnu: r-a4classif: Update to 1.34.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-a4classif): Update to 1.34.0.
* gnu: r-a4preproc: Update to 1.34.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.34.0.
* gnu: r-a4reporting: Update to 1.34.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.34.0.
* gnu: r-a4base: Update to 1.34.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.0.
* gnu: r-a4: Update to 1.34.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-a4): Update to 1.34.0.
* gnu: r-abseqr: Update to 1.4.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-abseqr): Update to 1.4.0.
* gnu: r-bacon: Update to 1.14.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-bacon): Update to 1.14.0.
* gnu: r-rgadem: Update to 2.34.0.Ricardo Wurmus2019-12-15
| | | | * gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.0.
* gnu: r-motiv: Update to 1.42.0.Ricardo Wurmus2019-12-15
| | | | | * gnu/packages/bioconductor.scm (r-motiv): Update to 1.42.0. [propagated-inputs]: Add r-genomicranges.
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