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* gnu: Add python-sphinx-copybutton.Ricardo Wurmus2019-09-13
| | | | * gnu/packages/sphinx.scm (python-sphinx-copybutton): New variable.
* gnu: python-matplotlib: Update to 3.1.1.Ricardo Wurmus2019-09-13
| | | | | | | | | | | * gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.1.1. [native-inputs]: Remove python-nose; add python-pytest and unzip; add jquery-ui. [arguments]: Add build phases "fix-and-disable-failing-tests" and "install-jquery-ui", and move the "check" phase after the "install" phase; use the default backend in setup.cfg. (python2-matplotlib): Keep at version 2.2.3. (python-matplotlib-documentation)[arguments]: Remove "check" phase.
* gnu: Add r-assertr.Wiktor Żelazny2019-09-13
| | | | | | * gnu/packages/cran.scm (r-assertr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: emacs-interactive-align: Update to 0.4.2.Brian Leung2019-09-12
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-interactive-align): Update to 0.4.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-doom-themes.Tim Gesthuizen2019-09-12
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-doom-themes): New variable. Co-authored-by: Brett Gilio <brettg@posteo.net> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* linux-container: "run-container" scripts shows the container's PID.Ludovic Courtès2019-09-12
| | | | | | | * gnu/build/linux-container.scm (call-with-container): Add #:process-spawned-hook and honor it. * gnu/system/linux-container.scm (container-script)[script]: Define 'explain' and pass it as #:process-spawned-hook'.
* services: Fix /usr/bin/env special file target.Ludovic Courtès2019-09-12
| | | | | | This is a followup to a9162155975a131afa1e6a44262afbb7af91f7fd. * gnu/services/base.scm (%base-services): Fix "/usr/bin/env" target.
* linux-container: Exclude more services when sharing networking with the host.Ludovic Courtès2019-09-12
| | | | | * gnu/system/linux-container.scm (containerized-operating-system)[useless-services]: Add more services to the list when SHARED-NETWORK? is true.
* file-systems: Add /var/run/nscd to '%network-file-mappings'.Ludovic Courtès2019-09-12
| | | | | | | | | | | | | | | | | | This allows containers created by "guix environment -CN" or by "guix system container -N" to talk to the host nscd. * gnu/system/file-systems.scm (%network-file-mappings): Add "/var/run/nscd". * gnu/build/shepherd.scm (default-mounts)[nscd-socket]: Remove. * gnu/system/linux-container.scm (container-script)[nscd-run-directory] [nscd-mapping, nscd-os, nscd-specs]: Remove. [script]: Filter out from SPECS bind-mounts where the device does not exist. * guix/scripts/environment.scm (launch-environment/container) [optional-mapping->fs]: New procedure. [mappings]: Remove %NETWORK-FILE-MAPPINGS. [file-systems]: Add %NETWORK-FILE-MAPPINGS here, filtered through 'optional-mapping->fs'.
* build: cargo-build-system: Strip store hash from vendor-dir.Efraim Flashner2019-09-12
| | | | | * guix/build/cargo-build-system.scm (configure): When copying the sources into the vendor-dir strip off the hash before the package name.
* gnu: gmsh: Fetch source from Git.Paul Garlick2019-09-12
| | | | * gnu/packages/maths.scm (gmsh)[source]: Switch to GIT-FETCH.
* gnu: python-pytest-virtualenv: Enable tests.Maxim Cournoyer2019-09-13
| | | | | | | * gnu/packages/python-check.scm (python-pytest-virtualenv) [phases]{patch-virtualenv-executable}: New phase. [propagated-inputs]: Move python-virtualenv from here... [inputs]: ...to here.
* gnu: python-pathpy: Add a missing propagated input.Maxim Cournoyer2019-09-13
| | | | | | | This fixes the build of 'python-pytest-shutil', amongst others. * gnu/packages/python-xyz.scm (python-pathpy)[propagated-inputs]: Add python-importlib-metadata.
* gnu: gfbgraph: Don't use NAME in source URI.Tobias Geerinckx-Rice2019-09-12
| | | | * gnu/packages/gnome.scm (gfbgraph)[source]: Hard-code NAME.
* gnu: openconnect: Update to 8.05 [fixes CVE-2019-16239].Tobias Geerinckx-Rice2019-09-12
| | | | * gnu/packages/vpn.scm (openconnect): Update to 8.05.
* gnu: hypre: Update texlive-union.Ricardo Wurmus2019-09-12
| | | | | | * gnu/packages/maths.scm (hypre)[native-inputs]: Replace texlive-generic-xypic and texlive-fonts-xypic with texlive-xypic; add texlive-cm to the texlive-union.
* gnu: texlive-xypic: Install all files.Ricardo Wurmus2019-09-12
| | | | | | | | Reported by numerobis on the #guix IRC channel. * gnu/packages/tex.scm (texlive-xypic)[source]: Install "tex/generic/xypic" files. [arguments]: Remove #:tex-directory.
* gnu: python-language-server: Update to 0.28.3-1.c3cab77.Brian Leung2019-09-12
| | | | | | * gnu/packages/python-xyz.scm (python-language-server): Update to 0.28.3-1.c3cab77. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
* gnu: r-bsgenome-celegans-ucsc-ce6: Permit substitution.Ricardo Wurmus2019-09-11
| | | | | * gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6)[arguments]: Remove field.
* gnu: r-bsgenome-celegans-ucsc-ce6: Use bioconductor-uri.Ricardo Wurmus2019-09-11
| | | | | * gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6)[source]: Use BIOCONDUCTOR-URI.
* gnu: python-ipython-documentation: Make reproducible.Ricardo Wurmus2019-09-11
| | | | | | | | Fixes <https://bugs.gnu.org/37373/>. * gnu/packages/python-xyz.scm (python-ipython)[arguments]: Add phase "make-docs-reproducible" to remove timestamps from documentation generated in dependent python-ipython-documentation package.
* gnu: recode: Don't use NAME in source URI.Tobias Geerinckx-Rice2019-09-11
| | | | * gnu/packages/textutils.scm (recode)[source]: Hard-code NAME.
* gnu: recode: Update to 3.7.5.Tobias Geerinckx-Rice2019-09-11
| | | | | * gnu/packages/textutils.scm (recode): Update to 3.7.5. [native-inputs]: Use python@3 and python-cython@3.
* gnu: glslang: Use GIT-FILE-NAME.Tobias Geerinckx-Rice2019-09-11
| | | | * gnu/packages/vulkan.scm (glslang)[source]: Use GIT-FILE-NAME.
* gnu: nghttp2: Don't use NAME in source URI.Tobias Geerinckx-Rice2019-09-11
| | | | * gnu/packages/web.scm (nghttp2)[source]: Hard-code NAME.
* gnu: neofetch: Update to 6.1.0.Tobias Geerinckx-Rice2019-09-11
| | | | * gnu/packages/admin.scm (neofetch): Update to 6.1.0.
* gnu: youtube-dl: Update to 2019.09.12.Rutger Helling2019-09-11
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2019.09.12.
* gnu: openssl: Update to 1.1.1d [fix CVE-2019-{1547,1549,1552,1563}].Tobias Geerinckx-Rice2019-09-11
| | | | * gnu/packages/tls.scm (openssl-next): Update to 1.1.1d.
* doc: Actually suggest ‘fc-cache -r’.Tobias Geerinckx-Rice2019-09-11
| | | | | | A follow-up commit to 0cd3e99d64081e958919845ddd01ae8d2fb2d692. * doc/guix.texi (Application Setup): Fix my own typo.
* doc: Run fc-cache verbosely and delete existing caches.Joshua Branson2019-09-11
| | | | | | | * doc/guix.texi (Application Setup): Suggest ‘fc-cache -rv’ instead of ‘fc-cache -f’. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
* services: libvirtd: Use '/run/current-system/profile/bin' as PATH.宋文武2019-09-11
| | | | | | | This is a followup to ef640db2f509f51ebfe3a6a66ba837ef3103bbb7. * gnu/services/virtualization.scm (libvirt-shepherd-service): Set '#:environment-variables' for 'make-forkexec-constructor'.
* gnu: foo2zjs: Update to 20190909.Tobias Geerinckx-Rice2019-09-11
| | | | * gnu/packages/cups.scm (foo2zjs): Update to 20190909.
* gnu: workrave: Correct the types of inputs used.Maxim Cournoyer2019-09-11
| | | | | | * gnu/packages/gnome.scm (workrave)[propagated-inputs]: Move them all to... [inputs]: ...here. [native-inputs]: Move libxscrnsaver to the 'inputs' field.
* gnu: workrave: Update to version 1.10.34.Maxim Cournoyer2019-09-11
| | | | | | | * gnu/packages/gnome.scm (workrave): Update version and hash strings. [inputs]: Remove python-cheetah. [native-inputs]: Add boost, python-3 and python-jinja2; remove the "bin" output of glib.
* gnu: emacs-debbugs: Update to 0.19.Ludovic Courtès2019-09-11
| | | | * gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.19.
* gnu: emacs-smart-mode-line: Update to 2.13.Ludovic Courtès2019-09-11
| | | | * gnu/packages/emacs-xyz.scm (emacs-smart-mode-line): Update to 2.13.
* gnu: guile-json: Use "mirror://savannah" URL.Ludovic Courtès2019-09-11
| | | | | * gnu/packages/guile.scm (guile-json, guile-json-3): Change URL to mirror://savannah.
* gnu: guile-json: Update to 3.2.0.Ludovic Courtès2019-09-11
| | | | * gnu/packages/guile.scm (guile-json-3): Update to 3.2.0.
* gnu: guile-gcrypt: Update to 0.2.0.Ludovic Courtès2019-09-11
| | | | * gnu/packages/gnupg.scm (guile-gcrypt): Update to 0.2.0.
* gnu: libvirt: Don't wrap with PATH.宋文武2019-09-11
| | | | | | | | | | | This reverts commit 903e051a71467bc96a054c9b4ed89348fdae8977 to fix <https://bugs.gnu.org/31365>. The full path of the 'ip' command is already embedded, and we want to search 'qemu' in PATH. * gnu/packages/virtualization.scm (libvirt): Remove 'wrap-libvirtd phase. Add configure flags to run qemu as 'nobody:kvm'. * gnu/services/virtualization.scm (libvirt-service-type): Add 'qemu' to the system profile.
* gnu: emacs-elpy: Update to 1.31.0.Maxim Cournoyer2019-09-11
| | | | * gnu/packages/emacs-xyz.scm (emacs-elpy): Update to 1.31.0.
* gnu: python-jedi: Update to 0.15.1 and re-enable tests.Maxim Cournoyer2019-09-11
| | | | | * gnu/packages/python-xyz.scm (python-jedi): Update to 0.15.1; re-enable tests.
* gnu: python-parso: Run the test suite.Maxim Cournoyer2019-09-11
| | | | * gnu/packages/python-xyz.scm (python-parso)[phases]: Replace the check phase.
* gnu: python-parso: Update to 0.5.1.Maxim Cournoyer2019-09-11
| | | | * gnu/packages/python-xyz.scm (python-parso): Update to 0.5.1.
* gnu: Add openscad.Steve Sprang2019-09-11
| | | | | | * gnu/packages/engineering.scm (openscad): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
* gnu: nftables: Update to 0.9.2.Rutger Helling2019-09-11
| | | | * gnu/packages/linux.scm (nftables): Update to 0.9.2.
* gnu: libnftnl: Update to 1.1.4.Rutger Helling2019-09-11
| | | | * gnu/packages/linux.scm (libnftnl): Update to 1.1.4.
* gnu: libsoup: Don't use NAME in source URI.Tobias Geerinckx-Rice2019-09-11
| | | | * gnu/packages/gnome.scm (libsoup)[source]: Hard-code NAME.
* gnu: tracker: Don't use NAME in source URI.Tobias Geerinckx-Rice2019-09-11
| | | | * gnu/packages/gnome.scm (tracker)[source]: Hard-code NAME.
* gnu: gvfs: Don't use NAME in source URI.Tobias Geerinckx-Rice2019-09-11
| | | | * gnu/packages/gnome.scm (gvfs)[source]: Hard-code NAME.
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