| Commit message (Collapse) | Author | Age |
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* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene)[source]:
Use bioconductor-uri.
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* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene)[source]:
Use bioconductor-uri.
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* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg19-knowngene)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
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* gnu/packages/bioconductor.scm (r-genelendatabase)[source]: Use
bioconductor-uri.
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* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
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* gnu/packages/bioconductor.scm (r-org-mm-eg-db)[source]: Use
bioconductor-uri.
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* gnu/packages/bioconductor.scm (r-org-hs-eg-db)[source]: Use
bioconductor-uri.
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* gnu/packages/bioconductor.scm (r-org-dr-eg-db)[source]: Use
bioconductor-uri.
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* gnu/packages/bioconductor.scm (r-org-dm-eg-db)[source]: Use
bioconductor-uri.
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* gnu/packages/bioconductor.scm (r-org-ce-eg-db)[source]: Use
bioconductor-uri.
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* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
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* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked)[source]:
Use bioconductor-uri.
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* gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
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* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked)[source]:
Use bioconductor-uri.
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* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
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* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked)[source]:
Use bioconductor-uri.
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* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3)[source]:
Use bioconductor-uri.
[arguments]: Enable substitution.
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* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6)[source]:
Use bioconductor-uri.
[arguments]: Permit substitution.
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* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10)[source]: Use
bioconductor-uri.
[arguments]: Permit substitution.
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* gnu/packages/emacs-xyz.scm (emacs-olivetti): Update to 1.8.1.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/emacs-xyz.scm (emacs-irony-mode): Update to 1.4.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/emacs-xyz.scm (emacs-elisp-demos): Update to 2019.12.01.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 2.8.0.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from
here...
* gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here.
* gnu/packages/benchmark.scm, gnu/packages/databases.scm,
gnu/packages/graph.scm, gnu/packages/parallel.scm,
gnu/packages/serialization.scm: Import (gnu packages python-science).
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* gnu/packages/patches/handbrake-opt-in-nvenc.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/video.scm (handbrake)[source]: Upgrade to 1.3.0. Remove
patch.
[native-inputs]: Remove cmake and curl.
[inputs]: Add dav1d and numactl.
[arguments]: Add "--disable-nvenc" to configure flags in place of patch.
Adjust "bootstrap" phase in response to upstream changes.
Add "patch-SHELL" and "relax-reqs" phases.
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Users with strict umasks (e.g. 0077) would end up with an unreadable
/gnu (mode 0700) and no way to run guix.
Reported by A. <@aaap:matrix.org> on #guix.
* etc/guix-install.sh (main): Set umask before installing anything.
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* gnu/packages/c.scm (tcc): Add native search paths.
(tcc-wrapper): Remove variable.
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* gnu/packages/check.scm (cmocka): Update to 1.1.5.
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* gnu/packages/gtk.scm (girara): Update to 0.3.3.
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* gnu/packages/cdrom.scm (libcdio): Update to 2.1.0.
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* gnu/packages/cdrom.scm (libcdio-paranoia): Update to 10.2+2.0.0.
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* gnu/packages/cdrom.scm (libburn): Update to 1.5.2.
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* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.3.
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* gnu/packages/statistics.scm (r-roxygen2): Update to 7.0.2.
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* gnu/packages/statistics.scm (r-testthat): Update to 2.3.1.
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* gnu/packages/cran.scm (r-rspectra): Update to 0.16-0.
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* gnu/packages/cran.scm (r-sjplot): Update to 2.8.1.
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* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.1.
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* gnu/packages/cran.scm (r-maptools): Update to 0.9-9.
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* gnu/packages/cran.scm (r-network): Update to 1.16.0.
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* gnu/packages/cran.scm (r-dendextend): Update to 1.13.2.
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* gnu/packages/cran.scm (r-curl): Update to 4.3.
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This reverts commit 7b40d59114e1462d6d8140f325a66b12e91db667.
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* gnu/packages/image.scm (jp2a): Downgrade to 1.0.6.
[source]: Download from Debian's sources.
[inputs]: Add ncurses.
[native-inputs]: Remove autoconf, automake, pkg-config.
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* gnu/packages/mastodon.scm (toot)[propagated-inputs]: Move all ...
[inputs]: ... here.
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* gnu/packages/mastodon.scm (toot)[propagated-inputs]: Add python-urwid.
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* gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.7.
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* gnu/packages/xdisorg.scm (xlockmore): Update to 5.59.
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* gnu/packages/xfce.scm (exo): Update to 0.12.10.
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* gnu/packages/linux.scm (sysstat): Update to 12.2.0.
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