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* gnu: r-rlang: Update to 0.4.3.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/statistics.scm (r-rlang): Update to 0.4.3.
* gnu: r-knitr: Update to 1.27.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/statistics.scm (r-knitr): Update to 1.27.
* gnu: r-foreign: Update to 0.8-75.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/statistics.scm (r-foreign): Update to 0.8-75.
* gnu: r-shinycssloaders: Update to 0.3.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-shinycssloaders): Update to 0.3.
* gnu: r-idpmisc: Update to 1.1.20.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-idpmisc): Update to 1.1.20.
* gnu: r-rngwell: Update to 0.10-6.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-rngwell): Update to 0.10-6.
* gnu: r-bio3d: Update to 2.4-1.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-bio3d): Update to 2.4-1.
* gnu: r-parameters: Update to 0.4.1.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-parameters): Update to 0.4.1.
* gnu: r-leiden: Update to 0.3.2.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-leiden): Update to 0.3.2.
* gnu: r-rhpcblasctl: Update to 0.20-17.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-17.
* gnu: r-threejs: Update to 0.3.3.Ricardo Wurmus2020-01-27
| | | | | | * gnu/packages/cran.scm (r-threejs): Update to 0.3.3. [native-inputs]: Use jquery 1.12.4 and threejs version r111. [arguments]: Adjust.
* gnu: r-farver: Update to 2.0.3.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-farver): Update to 2.0.3.
* gnu: r-adegenet: Update to 2.1.2.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-adegenet): Update to 2.1.2.
* gnu: r-cobs: Update to 1.3-4.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-cobs): Update to 1.3-4.
* gnu: r-dorng: Update to 1.8.2.Ricardo Wurmus2020-01-27
| | | | | * gnu/packages/cran.scm (r-dorng): Update to 1.8.2. [propagated-inputs]: Remove r-pkgmaker.
* gnu: r-future: Update to 1.16.0.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-future): Update to 1.16.0.
* gnu: r-rmpfr: Update to 0.8-1.Ricardo Wurmus2020-01-27
| | | | | | * gnu/packages/cran.scm (r-rmpfr): Update to 0.8-1. [inputs]: Add gmp. [native-inputs]: Add pkg-config.
* gnu: r-gmp: Update to 0.5-13.6.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-gmp): Update to 0.5-13.6.
* gnu: r-afex: Update to 0.26-0.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-afex): Update to 0.26-0.
* gnu: r-gh: Update to 1.1.0.Ricardo Wurmus2020-01-27
| | | | | * gnu/packages/cran.scm (r-gh): Update to 1.1.0. [propagated-inputs]: Add r-cli.
* gnu: r-sjplot: Update to 2.8.2.Ricardo Wurmus2020-01-27
| | | | | | * gnu/packages/cran.scm (r-sjplot): Update to 2.8.2. [propagated-inputs]: Remove r-ggrepel, r-glmmtmb, r-lme4, r-magrittr, r-modelr, and r-psych.
* gnu: r-effectsize: Update to 0.1.1.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-effectsize): Update to 0.1.1.
* gnu: r-performance: Update to 0.4.3.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-performance): Update to 0.4.3.
* gnu: r-bayestestr: Update to 0.5.1.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-bayestestr): Update to 0.5.1.
* gnu: r-sjstats: Update to 0.17.8.Ricardo Wurmus2020-01-27
| | | | | * gnu/packages/cran.scm (r-sjstats): Update to 0.17.8. [propagated-inputs]: Add r-effectsize.
* gnu: r-survey: Update to 3.37.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-survey): Update to 3.37.
* gnu: r-magick: Update to 2.3.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-magick): Update to 2.3.
* gnu: r-sjlabelled: Update to 1.1.2.Ricardo Wurmus2020-01-27
| | | | | * gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.2. [propagated-inputs]: Remove r-magrittr, r-purrr, r-rlang, and r-tidyselect.
* gnu: r-factominer: Update to 2.1.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-factominer): Update to 2.1.
* gnu: r-leaps: Update to 3.1.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-leaps): Update to 3.1.
* gnu: r-vctrs: Update to 0.2.2.Ricardo Wurmus2020-01-27
| | | | | * gnu/packages/cran.scm (r-vctrs): Update to 0.2.2. [propagated-inputs]: Remove r-backports and r-zeallot.
* gnu: r-tsp: Update to 1.1-8.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-tsp): Update to 1.1-8.
* gnu: r-xts: Update to 0.12-0.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-xts): Update to 0.12-0.
* gnu: r-broom: Update to 0.5.4.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-broom): Update to 0.5.4.
* gnu: r-lpsolve: Update to 5.6.15.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-lpsolve): Update to 5.6.15.
* gnu: r-prettyunits: Update to 1.1.1.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-prettyunits): Update to 1.1.1.
* gnu: r-rgooglemaps: Update to 1.4.5.2.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.2.
* gnu: r-callr: Update to 3.4.1.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/cran.scm (r-callr): Update to 3.4.1.
* gnu: r-diversitree: Update to 0.9-13.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/bioinformatics.scm (r-diversitree): Update to 0.9-13.
* gnu: r-metap: Update to 1.3.Ricardo Wurmus2020-01-27
| | | | * gnu/packages/bioconductor.scm (r-metap): Update to 1.3.
* gnu: python-testpath: Remove incorrect #:imported-modules.base-for-series-2730Ludovic Courtès2020-01-27
| | | | | | | | | | | | Fixes <https://bugs.gnu.org/39298>. Reported by Clément Lassieur <clement@lassieur.org> and Ricardo Wurmus <rekado@elephly.net>. This pacakge would import (srfi srfi-1) from the host Guile, leading to build failures when the host Guile is 3.0. * gnu/packages/check.scm (python-testpath)[arguments]: Remove incorrect #:imported-modules.
* gnu: emacs-org-make-toc: Update to 0.4.David Wilson2020-01-27
| | | | * gnu/packages/emacs-xyz.scm (emacs-org-make-toc): Update to 0.4
* gnu: public-inbox: Enable support for background HTTP/NNTP daemons.宋文武2020-01-27
| | | | * gnu/packages/mail.scm (public-inbox)[inputs]: Add perl-net-server.
* gnu: keepassxc: Update to 2.5.3.Efraim Flashner2020-01-27
| | | | * gnu/packages/password-utils.scm (keepassxc): Update to 2.5.3.
* gnu: s6: Install documentation.宋文武2020-01-27
| | | | * gnu/packages/skarnet.scm (s6)[arguments]: Add 'install-doc' phase.
* gnu: ocaml: Switch to ocaml 4.09 by default.Julien Lepiller2020-01-27
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bap and earley cannot be updated as they do not support 4.09 yet. Bap requires the janestreet packages, which cannot be upgraded as no version supports 4.09 and 4.07 at the same time. Moreover, newer versions of the janestreet packages have a different dependency graph, which will require a whole new set of packages. We cannot simply use package-with-ocaml4.07 on them. * gnu/packages/ocaml.scm (ocaml-sqlite3, ocaml-ppx-tools, ocaml-gen) (ocaml-sedlex, ocaml-pcre, ocaml-expect, ocaml-ezjsonm, ocaml-uri) (ocaml-piqilib, ocaml-piqi, ocaml-charinfo-width, ocaml-zed) (ocaml-lambda-term, ocaml-utop, ocaml-ppx-inline-test, ocaml-earley) (ocaml-merlin, ocaml-gsl, ocaml-gsl-1, ocaml-sexplib0, ocaml-parsexp) (ocaml-sexplib, ocaml-base, ocaml-stdio, ocaml-ppxlib, ocaml-ppx-compare) (ocaml-fieldslib, ocaml-variantslib, ocaml-ppx-fields-conv) (ocaml-ppx-sexp-conv, ocaml-ppx-variants-conv, ocaml-ppx-custom-printf) (ocaml-bin-prot, ocaml-ppx-hash, ocaml-ppx-enumerate, ocaml-ppx-bench) (ocaml-ppx-here, ocaml-ppx-typerep, ocaml-ppx-sexp-value) (ocaml-ppx-sexp-message, ocaml-ppx-pipebang, ocaml-ppx-optional) (ocaml-ppx-optcomp, ocaml-ppx-fail, ocaml-ppx-let, ocaml-ppx-assert) (ocaml-ppx-expect, ocaml-ppx-js-style, ocaml-ppx-typerep-conv) (ocaml-ppx-base, ocaml-ppx-bin-prot, ocaml-ppx-jane) (ocaml-splittable-random, ocaml-configurator, ocaml-spawn, ocaml-core) (ocaml-core-kernel, ocaml-odoc, ocaml-fftw3, ocaml-lacaml): Rename to ... (ocaml4.07-sqlite3, ocaml4.07-ppx-tools, ocaml4.07-gen, ocaml4.07-sedlex) (ocaml4.07-pcre, ocaml4.07-expect, ocaml4.07-ezjsonm, ocaml4.07-uri) (ocaml4.07-piqilib, ocaml4.07-piqi, ocaml4.07-charinfo-width) (ocaml4.07-zed, ocaml4.07-lambda-term, ocaml4.07-utop) (ocaml4.07-ppx-inline-test, ocaml4.07-earley, ocaml4.07-merlin) (ocaml4.07-gsl, ocaml4.07-gsl-1, ocaml4.07-sexplib0, ocaml4.07-parsexp) (ocaml4.07-sexplib, ocaml4.07-base, ocaml4.07-stdio, ocaml4.07-ppxlib) (ocaml4.07-ppx-compare, ocaml4.07-fieldslib, ocaml4.07-variantslib) (ocaml4.07-ppx-fields-conv, ocaml4.07-ppx-sexp-conv) (ocaml4.07-ppx-variants-conv, ocaml4.07-ppx-custom-printf) (ocaml4.07-bin-prot, ocaml4.07-ppx-hash, ocaml4.07-ppx-enumerate) (ocaml4.07-ppx-bench, ocaml4.07-ppx-here, ocaml4.07-ppx-typerep) (ocaml4.07-ppx-sexp-value, ocaml4.07-ppx-sexp-message) (ocaml4.07-ppx-pipebang, ocaml4.07-ppx-optional, ocaml4.07-ppx-optcomp) (ocaml4.07-ppx-fail, ocaml4.07-ppx-let, ocaml4.07-ppx-assert) (ocaml4.07-ppx-expect, ocaml4.07-ppx-js-style) (ocaml4.07-ppx-typerep-conv, ocaml4.07-ppx-base, ocaml4.07-ppx-bin-prot) (ocaml4.07-ppx-jane, ocaml4.07-splittable-random) (ocaml4.07-configurator, ocaml4.07-spawn, ocaml4.07-core) (ocaml4.07-core-kernel, ocaml4.07-odoc, ocaml4.07-fftw3) (ocaml4.07-lacaml): ... to this and use ocaml 4.07. (bap, unison): Use ocaml-4.07. * gnu/packages/bioinformatics.scm (pplacer): Use ocaml-4.07.
* guix: ocaml: Also replace dune when relevant in package-with-explicit-ocaml.Julien Lepiller2020-01-27
| | | | | * guix/build-system/ocaml.scm (package-with-explicit-ocaml): Take a dune argument and add it to transformed packages when relevant.
* gnu: Add ocaml4.07-dune.Julien Lepiller2020-01-27
| | | | * gnu/packages/ocaml.scm (ocaml4.07-dune): New variable.
* gnu: Add ocaml4.07-lablgtk.Julien Lepiller2020-01-27
| | | | | * gnu/packages/ocaml.scm (ocaml4.07-lablgtk): New variable. (lablgtk)[properties]: Add variant.
* gnu: ocambuild: Update to 0.14.0.Julien Lepiller2020-01-27
| | | | | * gnu/packages/ocaml.scm (ocamlbuild): Update to 0.14.0. [build-system]: Use ocaml-build-system.
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