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* gnu: Add fxtract.•••* gnu/packages/bioinformatics.scm (fxtract): New variable. Ben Woodcroft2016-01-12
* gnu: youtube-dl: Update to 2016.01.09.•••* gnu/packages/video.scm (youtube-dl): Update to 2016.01.09. Efraim Flashner2016-01-11
* gnu: gp2c: Update to 0.0.9pl5.•••* gnu/packages/algebra.scm (gp2c): Update to 0.0.9pl5. Andreas Enge2016-01-11
* gnu: texlive: Use modify-phases syntax.•••* gnu/packages/texlive.scm (texlive-bin, texlive-texmf): Use modify-phases syntax. Andreas Enge2016-01-11
* gnu: man-pages: Update to 4.04.•••* gnu/packages/man.scm (man-pages): Update to 4.04. [source]: Add alternate location. Efraim Flashner2016-01-11
* build: Fix out-of-tree building of documentation.•••* doc.am (.dot.png, .dot.pdf, .dot.eps): Put the generated files into $(srcdir). Taylan Ulrich Bayırlı/Kammer2016-01-10
* gnu: bedtools: Update to 2.25.0.•••* gnu/packages/bioinformatics.scm (bedtools): Update to 0.25.0. [source]: Remove patch merged upstream. [arguments]: Use 'modify-phases'. Remove 'patch-makefile-SHELL-definition' phase. * gnu/packages/patches/bedtools-32bit-compilation.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove it. Ben Woodcroft2016-01-11
* gnu: bedtools: Use modify-phases.•••* gnu/packages/bioinformatics.scm (bedtools)[arguments]: Use modify-phases. Ben Woodcroft2016-01-11
* gnu: r: Update to 3.2.3.•••* gnu/packages/statistics.scm (r): Update to 3.2.3. Andreas Enge2016-01-09
* gnu: icecat: Update to 38.5.2-gnu1.•••* gnu/packages/gnuzilla.scm (icecat): Update to 38.5.2-gnu1. Andreas Enge2016-01-09
* gnu: ruby-2.1: Update to 2.1.8.•••* gnu/packages/ruby.scm (ruby-2.1): Update to 2.1.8. Ben Woodcroft2016-01-09
* gnu: i2c-tools: Update source and home-page URLs.•••* gnu/packages/linux.scm (i2c-tools)[source]: Update URL. [home-page]: Update URL. Leo Famulari2016-01-08
* gnu: lm-sensors: Update source and home-page URLs.•••* gnu/packages/linux.scm (lm-sensors)[source]: Update URL. [home-page]: Update URL. Leo Famulari2016-01-08
* gnu: nss: Update to 3.21 [fixes CVE-2015-7575].•••* gnu/packages/gnuzilla.scm (nss): Update to 3.21. [arguments]: In configure phase, setenv CC=gcc. * gnu/packages/patches/nss-pkgconfig.patch: Adapt to NSS 3.21. Mark H Weaver2016-01-08
* build-system/python: 'pypi-uri' takes an optional file name extension.•••Suggested by swedebugia <swedebugia@riseup.net>. * guix/build-system/python.scm (pypi-uri): Add 'extension' parameter and use it. Ludovic Courtès2016-01-08
* gnu: Add missing (gnu packages gcc) import.•••* gnu/packages/bioinformatics.scm: Use (gnu packages gcc). This is required by 'r-impute' for 'gfortran'. Mathieu Lirzin2016-01-08
* gnu: xterm: Update to 322.•••* gnu/packages/xorg.scm (xterm): Update to 322. Mathieu Lirzin2016-01-08
* gnu: epiphany: Update to 3.18.2.•••* gnu/packages/gnome.scm (epiphany): Update to 3.18.2. 宋文武2016-01-08
* gnu: webkitgtk: Update to 2.10.4.•••* gnu/packages/webkit.scm (webkitgtk): Update to 2.10.4. 宋文武2016-01-08
* doc: Document network-manager-service.•••* doc/guix.texi (Networking Services): Document network-manager-service. 宋文武2016-01-08
* doc: Add elaborate package search example.•••* doc/guix.texi (Invoking guix package): Add elaborate --search example using recsel and sexes. Ludovic Courtès2016-01-08
* gnu: Add Pfff.•••* gnu/packages/textutils.scm (pfff): New variable. Pjotr Prins2016-01-07
* gnu: mpv: Remove 'samba' input.•••This is a heavy-weight and uncommon feature. See <http://lists.gnu.org/archive/html/guix-devel/2015-12/msg00701.html>. * gnu/packages/video.scm (mpv)[inputs]: Remove 'samba'. Alex Kost2016-01-07
* emacs: Display supported systems in "Package Info".•••* emacs/guix-main.scm (%package-param-alist): Add 'systems'. * emacs/guix-ui-package.el (guix-package-info-insert-systems): New procedure. (guix-package-info-format): Add it. (guix-output-info-format): Likewise. (guix-package-info-titles): Add "Supported systems" title. Alex Kost2016-01-07
* gnu: Add genomation.•••* gnu/packages/bioinformatics.scm (r-genomation): New variable. Ricardo Wurmus2016-01-07
* gnu: Add seqPattern.•••* gnu/packages/bioinformatics.scm (r-seqpattern): New variable. Ricardo Wurmus2016-01-07
* gnu: Add impute.•••* gnu/packages/bioinformatics.scm (r-impute): New variable. Ricardo Wurmus2016-01-07
* gnu: Add BSgenome.•••* gnu/packages/bioinformatics.scm (r-bsgenome): New variable. Ricardo Wurmus2016-01-07
* gnu: Add plotly.•••* gnu/packages/statistics.scm (r-plotly): New variable. Ricardo Wurmus2016-01-07
* gnu: Add viridis.•••* gnu/packages/statistics.scm (r-viridis): New variable. Ricardo Wurmus2016-01-07
* gnu: Add topGO.•••* gnu/packages/bioinformatics.scm (r-topgo): New variable. Ricardo Wurmus2016-01-07
* gnu: Add matrixStats.•••* gnu/packages/statistics.scm (r-matrixstats): New variable. Ricardo Wurmus2016-01-07
* gnu: Add R.rsp.•••* gnu/packages/statistics.scm (r-r-rsp): New variable. Ricardo Wurmus2016-01-07
* gnu: Add R.cache.•••* gnu/packages/statistics.scm (r-r-cache): New variable. Ricardo Wurmus2016-01-07
* gnu: Add R.utils.•••* gnu/packages/statistics.scm (r-r-utils): New variable. Ricardo Wurmus2016-01-07
* gnu: Add R.oo.•••* gnu/packages/statistics.scm (r-r-oo): New variable. Ricardo Wurmus2016-01-07
* gnu: Add R.methodsS3.•••* gnu/packages/statistics.scm (r-r-methodss3): New variable. Ricardo Wurmus2016-01-07
* gnu: Add base64enc.•••* gnu/packages/statistics.scm (r-base64enc): New variable. Ricardo Wurmus2016-01-07
* gnu: Add DT.•••* gnu/packages/statistics.scm (r-dt): New variable. Ricardo Wurmus2016-01-07
* gnu: Add SparseM.•••* gnu/packages/statistics.scm (r-sparsem): New variable. Ricardo Wurmus2016-01-07
* gnu: Add GO.db.•••* gnu/packages/bioinformatics.scm (r-go-db): New variable. Ricardo Wurmus2016-01-07
* gnu: Add GenomicFeatures.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable. Ricardo Wurmus2016-01-07
* gnu: Add rtracklayer.•••* gnu/packages/bioinformatics.scm (r-rtracklayer): New variable. Ricardo Wurmus2016-01-07
* gnu: Add GenomicAlignments.•••* gnu/packages/bioinformatics.scm (r-genomicalignments): New variable. Ricardo Wurmus2016-01-07
* gnu: Add SummarizedExperiment.•••* gnu/packages/bioinformatics.scm (r-summarizedexperiment): New variable. Ricardo Wurmus2016-01-07
* gnu: Add Rsamtools.•••* gnu/packages/bioinformatics.scm (r-rsamtools): New variable. Ricardo Wurmus2016-01-07
* gnu: Add Biostrings.•••* gnu/packages/bioinformatics.scm (r-biostrings): New variable. Ricardo Wurmus2016-01-07
* gnu: Add BiocParallel.•••* gnu/packages/bioinformatics.scm (r-biocparallel): New variable. Ricardo Wurmus2016-01-07
* gnu: Add biomaRt.•••* gnu/packages/bioinformatics.scm (r-biomart): New variable. Ricardo Wurmus2016-01-07
* gnu: Add AnnotationDbi.•••* gnu/packages/bioinformatics.scm (r-annotationdbi): New variable. Ricardo Wurmus2016-01-07
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