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* gnu: Add r-ibreakdown.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-ibreakdown): New variable.
* gnu: Add r-ingredients.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-ingredients): New variable.
* gnu: r-purrr: Update to 0.3.4.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/statistics.scm (r-purrr): Update to 0.3.4. [native-inputs]: Add r-knitr.
* gnu: r-plotrix: Update to 3.7-8.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/statistics.scm (r-plotrix): Update to 3.7-8.
* gnu: r-withr: Update to 2.2.0.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/statistics.scm (r-withr): Update to 2.2.0. [native-inputs]: Add r-knitr.
* gnu: r-xml2: Update to 1.3.2.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/statistics.scm (r-xml2): Update to 1.3.2.
* gnu: r-dbplyr: Update to 1.4.3.Ricardo Wurmus2020-04-28
| | | | | | * gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.3. [propagated-inputs]: Add r-lifecycle. [native-inputs]: Add r-knitr.
* gnu: r-tibble: Update to 3.0.1.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/statistics.scm (r-tibble): Update to 3.0.1.
* gnu: r-foreign: Update to 0.8-78.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/statistics.scm (r-foreign): Update to 0.8-78.
* gnu: r-with-tests, r-minimal: Update to 4.0.0.Ricardo Wurmus2020-04-28
| | | | | | | | * gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.0. (r-with-tests)[arguments]: Add phase "set-locales". [native-inputs]: Add texlive-ae, texlive-inconsolata, and texlive-latex-xkeyval to texlive-union. [inputs]: Replace pcre with pcre2.
* gnu: stellarium: Update to 0.20.1.Björn Höfling2020-04-28
| | | | * gnu/packages/astronomy.scm (stellarium): Update to 0.20.1.
* doc: Update url to singularity before link rot occurs.operator.name2020-04-27
| | | | | | * doc/guix.texi: Update url to singularity before link rot occurs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* guix: edit: Make nano the default editor.Raghav Gururajan2020-04-27
| | | | | | | | | * guix/scripts/edit.scm: Make nano the default editor. Nano is sensible default, as it is installed by base system. For development, user can set custom value for $EDITOR. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* import: crate: Gracefully handle non-existent crates.Ludovic Courtès2020-04-27
| | | | | | | | Fixes <https://bugs.gnu.org/40891>. Reported by Hartmut Goebel <h.goebel@crazy-compilers.com>. * guix/import/crate.scm (crate->guix-package): Wrap value of 'version-number' and 'version*' in (and crate ...).
* tests: Remove trailing commas in JSON tests.Ludovic Courtès2020-04-27
| | | | | | | | | | These commas are rejected by Guile-JSON 3.5.0. * tests/crate.scm (test-foo-dependencies) (test-root-dependencies, test-intermediate-1-dependencies) (test-intermediate-2-dependencies): Remove trailing commas. * tests/gem.scm (test-bar-json): Likewise. * tests/pypi.scm (test-json): Likewise.
* gnu: Update minimap2 to 2.17.base-for-series-3701Roel Janssen2020-04-27
| | | | * gnu/packages/bioinformatics.scm (minimap2): Update to 2.17.
* gnu: Add sbcl-stumpwm-swm-gaps.Oleg Pykhalov2020-04-27
| | | | * gnu/packages/wm.scm (sbcl-stumpwm-swm-gaps): New variable.
* gnu: tarsplitter: Fix typo in description (spilt/split).Vincent Legoll2020-04-27
| | | | * gnu/packages/compression.scm (tarsplitter)[description]: Fix typo.
* doc: guix: Fix grammar in "Debugging Build Failures"TomZ2020-04-27
| | | | | | * doc/guix.texi (Debugging Build Failures): Fix grammar. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
* gnu: Add wf-recorder.Alex McGrath2020-04-27
| | | | | | * gnu/packages/video.scm (wf-recorder): New variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
* gnu: ktsuss: Use setuid "su" and "sudo" commands.Raghav Gururajan2020-04-27
| | | | | | | This has ktsudo actually gain root access. * gnu/packages/admin.scm (ktsuss)[arguments]: Instead of <sudo>/bin/{su,sudo} file names, use the setuid' verrsions.
* gnu: herbstluftwm: Update to 0.8.1Boris A. Dekshteyn2020-04-27
| | | | | | * gnu/packages/wm.scm: herbstluftwm: Update to 0.8.1 Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
* gnu: fldigi: Update to 4.1.12.Guillaume Le Vaillant2020-04-27
| | | | * gnu/packages/radio.scm (fldigi): Update to 4.1.12.
* file-systems: mount the PID cgroup filesystem.Jakub Kądziołka2020-04-27
| | | | | | | * gnu/system/file-systems.scm (%control-groups): Add "pids". * gnu/services/docker.scm (docker-shepherd-service): Resolve a TODO. This has allowed me to make a specific configuration of nsjail work.
* gnu: Add python-scikit-rebate.Roel Janssen2020-04-27
| | | | * gnu/packages/machine-learning.scm (python-scikit-rebate): New variable.
* gnu: Add python-deeptools.Roel Janssen2020-04-27
| | | | * gnu/packages/bioinformatics.scm (python-deeptools): New variable.
* gnu: Add python-deeptoolsintervals.Roel Janssen2020-04-27
| | | | * gnu/packages/bioinformatics.scm (python-deeptoolsintervals): New variable.
* gnu: Add python-bitarray.Roel Janssen2020-04-27
| | | | * gnu/packages/python-xyz.scm (python-bitarray): New variable.
* gnu: Add r-cummerbund.Roel Janssen2020-04-27
| | | | * gnu/packages/bioconductor.scm (r-cummerbund): New variable.
* gnu: Add r-inum.Roel Janssen2020-04-27
| | | | * gnu/packages/cran.scm (r-inum): New variable.
* gnu: Add r-ggpmisc.Roel Janssen2020-04-27
| | | | * gnu/packages/cran.scm (r-ggpmisc): New variable.
* gnu: Add r-coverageview.Roel Janssen2020-04-27
| | | | * gnu/packages/bioconductor.scm (r-coverageview): New variable.
* gnu: Add peek.Ricardo Wurmus2020-04-27
| | | | * gnu/packages/video.scm (peek): New variable.
* gnu: emacs-org-reveal: Fix syntax error in description.Ricardo Wurmus2020-04-27
| | | | | * gnu/packages/emacs-xyz.scm (emacs-org-reveal)[description]: Fix Texinfo syntax error.
* gnu: Add texlive-inconsolata.Ricardo Wurmus2020-04-27
| | | | * gnu/packages/tex.scm (texlive-inconsolata): New variable.
* gnu: Add r-bsgenome-hsapiens-ucsc-hg38.Roel Janssen2020-04-27
| | | | * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): New variable.
* gnu: Add r-karyoploter.Roel Janssen2020-04-27
| | | | * gnu/packages/bioconductor.scm (r-karyoploter): New variable.
* gnu: Add r-bezier.Roel Janssen2020-04-27
| | | | * gnu/packages/cran.scm (r-bezier): New variable.
* gnu: Add r-ideoviz.Roel Janssen2020-04-27
| | | | * gnu/packages/bioconductor.scm (r-ideoviz): New variable.
* gnu: Add r-ecp.Roel Janssen2020-04-27
| | | | * gnu/packages/cran.scm (r-ecp): New variable.
* gnu: Add r-reordercluster.Roel Janssen2020-04-27
| | | | * gnu/packages/cran.scm (r-reordercluster): New variable.
* gnu: liblinphone: Move documentation and tester to separate outputs.base-for-series-3693Maxim Cournoyer2020-04-27
| | | | | | | * gnu/packages/linphone.scm (liblinphone)[outputs]: Add a "doc" and "tester" outputs. [phases]: Add a separate-outputs phase. Move the glib-or-gtk-compile-schemas and glib-or-gtk-wrap phases after it.
* gnu: liblinphone: Fix the input type of some dependencies.Maxim Cournoyer2020-04-27
| | | | | | | | | | Libraries being linked to such as libxml2, libiconv and zlib should appear as 'inputs' rather than 'native-inputs'. * gnu/packages/linphone.scm (liblinphone)[native-inputs]: Move libiconv, libxml2 and zlib to... [inputs]: ...here. Move eudev, python-pystache and python-six to native-inputs.
* gnu: liblinphone: Remove hicolor-icon-theme and murrine inputs.Maxim Cournoyer2020-04-27
| | | | | | | | Icon themes and theme engines are best left for the users to select and install themselves. * gnu/packages/linphone.scm (liblinphone)[inputs]: Remove hicolor-icon-theme. [propagated-inputs]: Remove murrine.
* gnu: Add loadable module to wireguard-linux-compat.Brice Waegeneire2020-04-26
| | | | | | | | | | | | * gnu/packages/vpn.scm (wireguard-linux-compat)[build-system]: Replace 'gnu-build-system' by 'linux-module-build-system'. [outputs]: Add 'kernel-patch'. [arguments]: Adjust the build system. Add phases 'change-directory' and 'reset-cwd'. Rename phases 'build' to 'build-patch' and 'install' to 'install-patch'. [description]: Mention the loadable module. Signed-off-by: Leo Famulari <leo@famulari.name>
* channels: Use a declarative profile.Ludovic Courtès2020-04-26
| | | | | * guix/channels.scm (package-cache-file): Use 'profile' instead of 'profile-derivation'.
* services: system: Initial entries are non-monadic.Ludovic Courtès2020-04-26
| | | | | | | * gnu/system.scm (operating-system-directory-base-entries): Return a regular, non-monadic value. * gnu/services.scm (system-derivation): Adjust accordingly. * gnu/system/linux-container.scm (container-essential-services): Likewise.
* pack: Use a declarative profile.Ludovic Courtès2020-04-26
| | | | | * guix/scripts/pack.scm (guix-pack): Use a declarative profile instead of 'profile-derivation'.
* services: profile: Use a declarative profile.Ludovic Courtès2020-04-26
| | | | | * gnu/services.scm (packages->profile-entry): Use 'profile' instead of 'profile-derivation'.
* system: 'operating-system-directory-base-entries' uses 'profile'.Ludovic Courtès2020-04-26
| | | | | * gnu/system.scm (operating-system-directory-base-entries): Use a declarative profile instead of 'profile-derivation'.
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