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* gnu: gst-kaldi-nnet2-online: Update to 0-2.cb227ef.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/machine-learning.scm (gst-kaldi-nnet2-online): Update to 0-2.cb227ef.
* gnu: kaldi: Update to 0-2.d4791c0.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/machine-learning.scm (kaldi): Update to 0-2.d4791c0.
* gnu: r-hdf5array: Update to 1.14.4.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.4.
* gnu: r-seurat: Update to 3.1.5.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.5. [propagated-inputs]: Remove r-metap.
* gnu: r-topicmodels: Update to 0.2-11.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-topicmodels): Update to 0.2-11.
* gnu: r-stopwords: Update to 2.0.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/cran.scm (r-stopwords): Update to 2.0. [propagated-inputs]: Add r-desc and r-usethis.
* gnu: r-fda: Update to 5.1.4.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-fda): Update to 5.1.4.
* gnu: r-abtest: Update to 0.2.1.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/cran.scm (r-abtest): Update to 0.2.1. [propagated-inputs]: Add r-qgam; remove r-vgam.
* gnu: Add r-qgam.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-qgam): New variable.
* gnu: r-systemfonts: Update to 0.2.0.Ricardo Wurmus2020-04-28
| | | | | | * gnu/packages/cran.scm (r-systemfonts): Update to 0.2.0. [inputs]: Remove freetype. [native-inputs]: Add r-knitr.
* gnu: r-dalex: Update to 1.2.0.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/cran.scm (r-dalex): Update to 1.2.0. [propagated-inputs]: Add r-ibreakdown and r-ingredients.
* gnu: r-rex: Update to 1.2.0.Ricardo Wurmus2020-04-28
| | | | | | * gnu/packages/cran.scm (r-rex): Update to 1.2.0. [propagated-inputs]: Remove r-magrittr. [native-inputs]: Add r-knitr.
* gnu: r-optparse: Update to 1.6.6.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/cran.scm (r-optparse): Update to 1.6.6. [native-inputs]: Add r-knitr.
* gnu: r-sf: Update to 0.9-2.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-sf): Update to 0.9-2.
* gnu: r-future-apply: Update to 1.5.0.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-future-apply): Update to 1.5.0.
* gnu: r-etm: Update to 1.1.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-etm): Update to 1.1.
* gnu: r-future: Update to 1.17.0.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-future): Update to 1.17.0.
* gnu: r-protviz: Update to 0.6.4.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-protviz): Update to 0.6.4.
* gnu: r-rgl: Update to 0.100.54.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-rgl): Update to 0.100.54.
* gnu: r-ggeffects: Update to 0.14.3.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-ggeffects): Update to 0.14.3.
* gnu: r-bayestestr: Update to 0.6.0.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-bayestestr): Update to 0.6.0.
* gnu: r-emmeans: Update to 1.4.6.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/cran.scm (r-emmeans): Update to 1.4.6. [native-inputs]: Add r-knitr.
* gnu: r-raster: Update to 3.1-5.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-raster): Update to 3.1-5.
* gnu: r-insight: Update to 0.8.3.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-insight): Update to 0.8.3.
* gnu: r-tinytex: Update to 0.22.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-tinytex): Update to 0.22.
* gnu: r-tsp: Update to 1.1-10.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-tsp): Update to 1.1-10.
* gnu: r-broom: Update to 0.5.6.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/cran.scm (r-broom): Update to 0.5.6. [native-inputs]: Add r-knitr.
* gnu: r-distillery: Update to 1.0-7.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-distillery): Update to 1.0-7.
* gnu: r-ff: Update to 2.2-14.2.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-ff): Update to 2.2-14.2.
* gnu: r-powerlaw: Update to 0.70.6.Ricardo Wurmus2020-04-28
| | | | | | * gnu/packages/cran.scm (r-powerlaw): Update to 0.70.6. [propagated-inputs]: Remove r-vgam; add r-pracma. [native-inputs]: Add r-knitr.
* gnu: r-shinyfiles: Update to 0.8.0.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-shinyfiles): Update to 0.8.0.
* gnu: Add r-ibreakdown.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-ibreakdown): New variable.
* gnu: Add r-ingredients.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/cran.scm (r-ingredients): New variable.
* gnu: r-purrr: Update to 0.3.4.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/statistics.scm (r-purrr): Update to 0.3.4. [native-inputs]: Add r-knitr.
* gnu: r-plotrix: Update to 3.7-8.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/statistics.scm (r-plotrix): Update to 3.7-8.
* gnu: r-withr: Update to 2.2.0.Ricardo Wurmus2020-04-28
| | | | | * gnu/packages/statistics.scm (r-withr): Update to 2.2.0. [native-inputs]: Add r-knitr.
* gnu: r-xml2: Update to 1.3.2.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/statistics.scm (r-xml2): Update to 1.3.2.
* gnu: r-dbplyr: Update to 1.4.3.Ricardo Wurmus2020-04-28
| | | | | | * gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.3. [propagated-inputs]: Add r-lifecycle. [native-inputs]: Add r-knitr.
* gnu: r-tibble: Update to 3.0.1.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/statistics.scm (r-tibble): Update to 3.0.1.
* gnu: r-foreign: Update to 0.8-78.Ricardo Wurmus2020-04-28
| | | | * gnu/packages/statistics.scm (r-foreign): Update to 0.8-78.
* gnu: r-with-tests, r-minimal: Update to 4.0.0.Ricardo Wurmus2020-04-28
| | | | | | | | * gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.0. (r-with-tests)[arguments]: Add phase "set-locales". [native-inputs]: Add texlive-ae, texlive-inconsolata, and texlive-latex-xkeyval to texlive-union. [inputs]: Replace pcre with pcre2.
* gnu: stellarium: Update to 0.20.1.Björn Höfling2020-04-28
| | | | * gnu/packages/astronomy.scm (stellarium): Update to 0.20.1.
* doc: Update url to singularity before link rot occurs.operator.name2020-04-27
| | | | | | * doc/guix.texi: Update url to singularity before link rot occurs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* guix: edit: Make nano the default editor.Raghav Gururajan2020-04-27
| | | | | | | | | * guix/scripts/edit.scm: Make nano the default editor. Nano is sensible default, as it is installed by base system. For development, user can set custom value for $EDITOR. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* import: crate: Gracefully handle non-existent crates.Ludovic Courtès2020-04-27
| | | | | | | | Fixes <https://bugs.gnu.org/40891>. Reported by Hartmut Goebel <h.goebel@crazy-compilers.com>. * guix/import/crate.scm (crate->guix-package): Wrap value of 'version-number' and 'version*' in (and crate ...).
* tests: Remove trailing commas in JSON tests.Ludovic Courtès2020-04-27
| | | | | | | | | | These commas are rejected by Guile-JSON 3.5.0. * tests/crate.scm (test-foo-dependencies) (test-root-dependencies, test-intermediate-1-dependencies) (test-intermediate-2-dependencies): Remove trailing commas. * tests/gem.scm (test-bar-json): Likewise. * tests/pypi.scm (test-json): Likewise.
* gnu: Update minimap2 to 2.17.base-for-series-3701Roel Janssen2020-04-27
| | | | * gnu/packages/bioinformatics.scm (minimap2): Update to 2.17.
* gnu: Add sbcl-stumpwm-swm-gaps.Oleg Pykhalov2020-04-27
| | | | * gnu/packages/wm.scm (sbcl-stumpwm-swm-gaps): New variable.
* gnu: tarsplitter: Fix typo in description (spilt/split).Vincent Legoll2020-04-27
| | | | * gnu/packages/compression.scm (tarsplitter)[description]: Fix typo.
* doc: guix: Fix grammar in "Debugging Build Failures"TomZ2020-04-27
| | | | | | * doc/guix.texi (Debugging Build Failures): Fix grammar. Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
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